Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS01245 and HER17_RS01250 are separated by 9 nucleotides HER17_RS01250 and HER17_RS01255 are separated by 77 nucleotides HER17_RS01255 and HER17_RS01260 are separated by 58 nucleotides HER17_RS01260 and HER17_RS01265 are separated by 114 nucleotides
HER17_RS01245: HER17_RS01245 - amino acid ABC transporter permease, at 286,174 to 286,845
_RS01245
HER17_RS01250: HER17_RS01250 - amino acid ABC transporter ATP-binding protein, at 286,855 to 287,616
_RS01250
HER17_RS01255: HER17_RS01255 - M20 peptidase aminoacylase family protein, at 287,694 to 288,851
_RS01255
HER17_RS01260: HER17_RS01260 - amino acid ABC transporter ATP-binding protein, at 288,910 to 289,638
_RS01260
HER17_RS01265: HER17_RS01265 - amino acid ABC transporter permease, at 289,753 to 290,862
_RS01265
Position (kb) 287
288
289 Strain fitness (log2 ratio) -2
-1
0
1 at 286.769 kb on - strand, within HER17_RS01245 at 286.789 kb on + strand at 286.836 kb on - strand at 286.865 kb on + strand at 286.972 kb on - strand, within HER17_RS01250 at 286.995 kb on + strand, within HER17_RS01250 at 286.995 kb on + strand, within HER17_RS01250 at 287.080 kb on + strand, within HER17_RS01250 at 287.080 kb on + strand, within HER17_RS01250 at 287.108 kb on + strand, within HER17_RS01250 at 287.119 kb on + strand, within HER17_RS01250 at 287.120 kb on - strand, within HER17_RS01250 at 287.120 kb on - strand, within HER17_RS01250 at 287.121 kb on + strand, within HER17_RS01250 at 287.121 kb on + strand, within HER17_RS01250 at 287.122 kb on - strand, within HER17_RS01250 at 287.130 kb on + strand, within HER17_RS01250 at 287.301 kb on + strand, within HER17_RS01250 at 287.301 kb on + strand, within HER17_RS01250 at 287.301 kb on + strand, within HER17_RS01250 at 287.302 kb on - strand, within HER17_RS01250 at 287.379 kb on - strand, within HER17_RS01250 at 287.535 kb on + strand, within HER17_RS01250 at 287.535 kb on + strand, within HER17_RS01250 at 287.535 kb on + strand, within HER17_RS01250 at 287.536 kb on - strand, within HER17_RS01250 at 287.605 kb on + strand at 287.605 kb on + strand at 287.610 kb on + strand at 287.611 kb on - strand at 287.611 kb on - strand at 287.614 kb on + strand at 287.615 kb on - strand at 287.621 kb on + strand at 287.621 kb on + strand at 287.621 kb on + strand at 287.621 kb on + strand at 287.622 kb on - strand at 287.622 kb on - strand at 287.622 kb on - strand at 287.622 kb on - strand at 287.622 kb on - strand at 287.625 kb on + strand at 287.625 kb on + strand at 287.625 kb on + strand at 287.625 kb on + strand at 287.625 kb on + strand at 287.625 kb on + strand at 287.625 kb on + strand at 287.626 kb on - strand at 287.626 kb on - strand at 287.626 kb on - strand at 287.626 kb on - strand at 287.626 kb on - strand at 287.626 kb on - strand at 287.626 kb on - strand at 287.626 kb on - strand at 287.626 kb on - strand at 287.629 kb on + strand at 287.629 kb on + strand at 287.629 kb on + strand at 287.630 kb on - strand at 287.630 kb on - strand at 287.630 kb on - strand at 287.630 kb on - strand at 287.689 kb on + strand at 287.689 kb on + strand at 287.689 kb on + strand at 287.689 kb on + strand at 287.690 kb on - strand at 287.733 kb on - strand at 287.733 kb on - strand at 287.957 kb on - strand, within HER17_RS01255 at 287.964 kb on - strand, within HER17_RS01255 at 288.130 kb on + strand, within HER17_RS01255 at 288.130 kb on + strand, within HER17_RS01255 at 288.340 kb on + strand, within HER17_RS01255 at 288.340 kb on + strand, within HER17_RS01255 at 288.340 kb on + strand, within HER17_RS01255 at 288.341 kb on - strand, within HER17_RS01255 at 288.341 kb on - strand, within HER17_RS01255 at 288.403 kb on + strand, within HER17_RS01255 at 288.403 kb on + strand, within HER17_RS01255 at 288.403 kb on + strand, within HER17_RS01255 at 288.403 kb on + strand, within HER17_RS01255 at 288.403 kb on + strand, within HER17_RS01255 at 288.403 kb on + strand, within HER17_RS01255 at 288.403 kb on + strand, within HER17_RS01255 at 288.407 kb on + strand, within HER17_RS01255 at 288.407 kb on + strand, within HER17_RS01255 at 288.407 kb on + strand, within HER17_RS01255 at 288.408 kb on - strand, within HER17_RS01255 at 288.408 kb on - strand, within HER17_RS01255 at 288.408 kb on - strand, within HER17_RS01255 at 288.444 kb on + strand, within HER17_RS01255 at 288.444 kb on + strand, within HER17_RS01255 at 288.445 kb on - strand, within HER17_RS01255 at 288.445 kb on - strand, within HER17_RS01255 at 288.491 kb on - strand, within HER17_RS01255 at 288.491 kb on - strand, within HER17_RS01255 at 288.491 kb on - strand, within HER17_RS01255 at 288.518 kb on - strand, within HER17_RS01255 at 288.690 kb on + strand, within HER17_RS01255 at 288.691 kb on - strand, within HER17_RS01255 at 288.691 kb on - strand, within HER17_RS01255 at 288.691 kb on - strand, within HER17_RS01255 at 288.691 kb on - strand, within HER17_RS01255 at 288.691 kb on - strand, within HER17_RS01255 at 288.691 kb on - strand, within HER17_RS01255 at 288.711 kb on - strand, within HER17_RS01255 at 288.801 kb on + strand at 288.807 kb on + strand at 288.807 kb on + strand at 288.808 kb on - strand at 288.829 kb on + strand at 288.830 kb on - strand at 289.123 kb on - strand, within HER17_RS01260 at 289.246 kb on - strand, within HER17_RS01260 at 289.281 kb on - strand, within HER17_RS01260 at 289.448 kb on - strand, within HER17_RS01260 at 289.467 kb on + strand, within HER17_RS01260 at 289.585 kb on - strand at 289.607 kb on + strand at 289.607 kb on + strand at 289.653 kb on + strand at 289.683 kb on + strand at 289.763 kb on + strand at 289.764 kb on - strand at 289.844 kb on + strand at 289.844 kb on + strand at 289.844 kb on + strand at 289.844 kb on + strand at 289.844 kb on + strand at 289.845 kb on - strand at 289.845 kb on - strand at 289.845 kb on - strand at 289.845 kb on - strand at 289.848 kb on + strand at 289.848 kb on + strand at 289.848 kb on + strand at 289.848 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 286,769 - HER17_RS01245 0.89 -1.1 286,789 + -0.6 286,836 - -0.4 286,865 + +0.6 286,972 - HER17_RS01250 0.15 -0.0 286,995 + HER17_RS01250 0.18 -0.2 286,995 + HER17_RS01250 0.18 +0.2 287,080 + HER17_RS01250 0.30 +0.3 287,080 + HER17_RS01250 0.30 +0.4 287,108 + HER17_RS01250 0.33 +0.5 287,119 + HER17_RS01250 0.35 +0.2 287,120 - HER17_RS01250 0.35 -0.9 287,120 - HER17_RS01250 0.35 -0.2 287,121 + HER17_RS01250 0.35 -1.1 287,121 + HER17_RS01250 0.35 +0.1 287,122 - HER17_RS01250 0.35 +0.1 287,130 + HER17_RS01250 0.36 -0.1 287,301 + HER17_RS01250 0.59 -0.8 287,301 + HER17_RS01250 0.59 -0.5 287,301 + HER17_RS01250 0.59 -0.3 287,302 - HER17_RS01250 0.59 -0.2 287,379 - HER17_RS01250 0.69 +1.1 287,535 + HER17_RS01250 0.89 -0.1 287,535 + HER17_RS01250 0.89 +0.5 287,535 + HER17_RS01250 0.89 +0.2 287,536 - HER17_RS01250 0.89 +0.3 287,605 + -0.0 287,605 + -0.6 287,610 + +0.4 287,611 - +0.5 287,611 - +0.5 287,614 + -0.5 287,615 - -0.5 287,621 + -0.3 287,621 + +0.3 287,621 + +0.1 287,621 + -0.2 287,622 - -0.1 287,622 - -0.6 287,622 - -0.3 287,622 - -0.5 287,622 - -0.1 287,625 + -1.1 287,625 + +0.7 287,625 + -0.1 287,625 + +0.4 287,625 + +0.1 287,625 + +0.7 287,625 + -0.3 287,626 - +0.4 287,626 - +0.5 287,626 - +0.4 287,626 - -0.4 287,626 - -0.1 287,626 - +0.7 287,626 - +0.2 287,626 - +0.6 287,626 - +0.3 287,629 + +0.5 287,629 + -0.3 287,629 + -0.3 287,630 - -0.5 287,630 - -0.2 287,630 - -0.3 287,630 - -0.5 287,689 + +0.2 287,689 + +0.2 287,689 + +0.4 287,689 + -0.3 287,690 - -1.4 287,733 - +0.3 287,733 - +0.6 287,957 - HER17_RS01255 0.23 +1.1 287,964 - HER17_RS01255 0.23 -0.4 288,130 + HER17_RS01255 0.38 -0.3 288,130 + HER17_RS01255 0.38 +1.0 288,340 + HER17_RS01255 0.56 +0.5 288,340 + HER17_RS01255 0.56 +0.8 288,340 + HER17_RS01255 0.56 +1.3 288,341 - HER17_RS01255 0.56 -0.3 288,341 - HER17_RS01255 0.56 +0.6 288,403 + HER17_RS01255 0.61 -0.2 288,403 + HER17_RS01255 0.61 -0.1 288,403 + HER17_RS01255 0.61 -0.1 288,403 + HER17_RS01255 0.61 +0.0 288,403 + HER17_RS01255 0.61 -0.0 288,403 + HER17_RS01255 0.61 +0.6 288,403 + HER17_RS01255 0.61 -0.4 288,407 + HER17_RS01255 0.62 +0.6 288,407 + HER17_RS01255 0.62 +0.9 288,407 + HER17_RS01255 0.62 +0.3 288,408 - HER17_RS01255 0.62 -0.2 288,408 - HER17_RS01255 0.62 +0.4 288,408 - HER17_RS01255 0.62 -0.1 288,444 + HER17_RS01255 0.65 +0.2 288,444 + HER17_RS01255 0.65 +0.2 288,445 - HER17_RS01255 0.65 -0.6 288,445 - HER17_RS01255 0.65 +0.9 288,491 - HER17_RS01255 0.69 -0.1 288,491 - HER17_RS01255 0.69 -0.2 288,491 - HER17_RS01255 0.69 -0.0 288,518 - HER17_RS01255 0.71 -1.4 288,690 + HER17_RS01255 0.86 -0.4 288,691 - HER17_RS01255 0.86 -0.3 288,691 - HER17_RS01255 0.86 +0.0 288,691 - HER17_RS01255 0.86 +0.4 288,691 - HER17_RS01255 0.86 +0.4 288,691 - HER17_RS01255 0.86 +0.2 288,691 - HER17_RS01255 0.86 -0.5 288,711 - HER17_RS01255 0.88 +0.1 288,801 + +0.5 288,807 + -0.6 288,807 + +0.1 288,808 - -0.3 288,829 + -0.8 288,830 - +0.6 289,123 - HER17_RS01260 0.29 +0.0 289,246 - HER17_RS01260 0.46 -0.3 289,281 - HER17_RS01260 0.51 -0.2 289,448 - HER17_RS01260 0.74 -0.8 289,467 + HER17_RS01260 0.76 -2.5 289,585 - -1.0 289,607 + -0.1 289,607 + +0.0 289,653 + +0.8 289,683 + +0.7 289,763 + +0.9 289,764 - +0.2 289,844 + -0.6 289,844 + -0.4 289,844 + +0.1 289,844 + -0.9 289,844 + +0.3 289,845 - -0.3 289,845 - +0.7 289,845 - -1.0 289,845 - +0.2 289,848 + -0.4 289,848 + +0.5 289,848 + -0.5 289,848 + -0.2
Or see this region's nucleotide sequence