Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS00820 and HER17_RS00825 are separated by 255 nucleotides HER17_RS00825 and HER17_RS00830 are separated by 53 nucleotides
HER17_RS00820: HER17_RS00820 - class II fructose-bisphosphatase, at 191,301 to 192,311
_RS00820
HER17_RS00825: HER17_RS00825 - glycerol kinase GlpK, at 192,567 to 194,078
_RS00825
HER17_RS00830: HER17_RS00830 - aquaporin family protein, at 194,132 to 194,971
_RS00830
Position (kb) 192
193
194
195 Strain fitness (log2 ratio) -2
-1
0
1
2 at 191.695 kb on + strand, within HER17_RS00820 at 191.829 kb on + strand, within HER17_RS00820 at 191.831 kb on + strand, within HER17_RS00820 at 191.831 kb on + strand, within HER17_RS00820 at 191.831 kb on + strand, within HER17_RS00820 at 191.831 kb on + strand, within HER17_RS00820 at 191.832 kb on - strand, within HER17_RS00820 at 191.832 kb on - strand, within HER17_RS00820 at 191.832 kb on - strand, within HER17_RS00820 at 191.832 kb on - strand, within HER17_RS00820 at 191.859 kb on - strand, within HER17_RS00820 at 191.859 kb on - strand, within HER17_RS00820 at 191.879 kb on + strand, within HER17_RS00820 at 191.879 kb on + strand, within HER17_RS00820 at 191.879 kb on + strand, within HER17_RS00820 at 191.879 kb on + strand, within HER17_RS00820 at 191.879 kb on + strand, within HER17_RS00820 at 191.880 kb on - strand, within HER17_RS00820 at 191.880 kb on - strand, within HER17_RS00820 at 191.880 kb on - strand, within HER17_RS00820 at 191.880 kb on - strand, within HER17_RS00820 at 191.880 kb on - strand, within HER17_RS00820 at 191.883 kb on + strand, within HER17_RS00820 at 191.883 kb on + strand, within HER17_RS00820 at 191.883 kb on + strand, within HER17_RS00820 at 191.883 kb on + strand, within HER17_RS00820 at 191.884 kb on - strand, within HER17_RS00820 at 191.884 kb on - strand, within HER17_RS00820 at 191.884 kb on - strand, within HER17_RS00820 at 191.956 kb on + strand, within HER17_RS00820 at 191.956 kb on + strand, within HER17_RS00820 at 191.956 kb on + strand, within HER17_RS00820 at 191.956 kb on + strand, within HER17_RS00820 at 191.957 kb on - strand, within HER17_RS00820 at 191.957 kb on - strand, within HER17_RS00820 at 191.957 kb on - strand, within HER17_RS00820 at 191.957 kb on - strand, within HER17_RS00820 at 191.957 kb on - strand, within HER17_RS00820 at 191.957 kb on - strand, within HER17_RS00820 at 191.957 kb on - strand, within HER17_RS00820 at 191.957 kb on - strand, within HER17_RS00820 at 191.957 kb on - strand, within HER17_RS00820 at 192.072 kb on + strand, within HER17_RS00820 at 192.073 kb on - strand, within HER17_RS00820 at 192.119 kb on + strand, within HER17_RS00820 at 192.120 kb on - strand, within HER17_RS00820 at 192.167 kb on + strand, within HER17_RS00820 at 192.201 kb on + strand, within HER17_RS00820 at 192.202 kb on - strand, within HER17_RS00820 at 192.202 kb on - strand, within HER17_RS00820 at 192.248 kb on + strand at 192.249 kb on - strand at 192.250 kb on + strand at 192.297 kb on + strand at 192.311 kb on + strand at 192.311 kb on + strand at 192.311 kb on + strand at 192.311 kb on + strand at 192.312 kb on - strand at 192.312 kb on - strand at 192.315 kb on + strand at 192.315 kb on + strand at 192.315 kb on + strand at 192.315 kb on + strand at 192.316 kb on - strand at 192.316 kb on - strand at 192.316 kb on - strand at 192.316 kb on - strand at 192.323 kb on + strand at 192.323 kb on + strand at 192.324 kb on - strand at 192.324 kb on - strand at 192.357 kb on - strand at 192.364 kb on + strand at 192.364 kb on + strand at 192.364 kb on + strand at 192.364 kb on + strand at 192.364 kb on + strand at 192.364 kb on + strand at 192.364 kb on + strand at 192.364 kb on + strand at 192.365 kb on - strand at 192.365 kb on - strand at 192.365 kb on - strand at 192.365 kb on - strand at 192.365 kb on - strand at 192.435 kb on - strand at 192.446 kb on + strand at 192.460 kb on + strand at 192.460 kb on + strand at 192.460 kb on + strand at 192.460 kb on + strand at 192.460 kb on + strand at 192.551 kb on + strand at 192.551 kb on + strand at 192.552 kb on - strand at 192.552 kb on - strand at 192.900 kb on + strand, within HER17_RS00825 at 192.901 kb on - strand, within HER17_RS00825 at 192.901 kb on - strand, within HER17_RS00825 at 192.901 kb on - strand, within HER17_RS00825 at 192.901 kb on - strand, within HER17_RS00825 at 193.174 kb on + strand, within HER17_RS00825 at 193.178 kb on + strand, within HER17_RS00825 at 193.178 kb on + strand, within HER17_RS00825 at 193.178 kb on + strand, within HER17_RS00825 at 193.178 kb on + strand, within HER17_RS00825 at 193.279 kb on + strand, within HER17_RS00825 at 193.358 kb on + strand, within HER17_RS00825 at 193.359 kb on - strand, within HER17_RS00825 at 193.365 kb on - strand, within HER17_RS00825 at 193.402 kb on + strand, within HER17_RS00825 at 193.583 kb on + strand, within HER17_RS00825 at 193.669 kb on + strand, within HER17_RS00825 at 193.670 kb on - strand, within HER17_RS00825 at 193.670 kb on - strand, within HER17_RS00825 at 193.705 kb on + strand, within HER17_RS00825 at 193.706 kb on - strand, within HER17_RS00825 at 193.706 kb on - strand, within HER17_RS00825 at 193.778 kb on + strand, within HER17_RS00825 at 193.778 kb on + strand, within HER17_RS00825 at 193.780 kb on + strand, within HER17_RS00825 at 193.780 kb on + strand, within HER17_RS00825 at 193.780 kb on + strand, within HER17_RS00825 at 193.780 kb on + strand, within HER17_RS00825 at 193.781 kb on - strand, within HER17_RS00825 at 193.810 kb on - strand, within HER17_RS00825 at 193.812 kb on + strand, within HER17_RS00825 at 193.812 kb on + strand, within HER17_RS00825 at 193.812 kb on + strand, within HER17_RS00825 at 193.813 kb on - strand, within HER17_RS00825 at 193.813 kb on - strand, within HER17_RS00825 at 193.813 kb on - strand, within HER17_RS00825 at 193.813 kb on - strand, within HER17_RS00825 at 193.813 kb on - strand, within HER17_RS00825 at 193.813 kb on - strand, within HER17_RS00825 at 193.839 kb on - strand, within HER17_RS00825 at 193.957 kb on + strand at 194.013 kb on + strand at 194.059 kb on + strand at 194.060 kb on - strand at 194.078 kb on + strand at 194.079 kb on - strand at 194.110 kb on + strand at 194.111 kb on - strand at 194.155 kb on + strand at 194.156 kb on - strand at 194.271 kb on + strand, within HER17_RS00830 at 194.271 kb on + strand, within HER17_RS00830 at 194.272 kb on - strand, within HER17_RS00830 at 194.272 kb on - strand, within HER17_RS00830 at 194.272 kb on - strand, within HER17_RS00830 at 194.456 kb on - strand, within HER17_RS00830 at 194.531 kb on - strand, within HER17_RS00830 at 194.605 kb on + strand, within HER17_RS00830 at 194.605 kb on + strand, within HER17_RS00830 at 194.605 kb on + strand, within HER17_RS00830 at 194.605 kb on + strand, within HER17_RS00830 at 194.606 kb on - strand, within HER17_RS00830 at 194.606 kb on - strand, within HER17_RS00830 at 194.606 kb on - strand, within HER17_RS00830 at 194.653 kb on - strand, within HER17_RS00830 at 194.700 kb on + strand, within HER17_RS00830 at 194.700 kb on + strand, within HER17_RS00830 at 194.701 kb on - strand, within HER17_RS00830 at 194.701 kb on - strand, within HER17_RS00830 at 194.701 kb on - strand, within HER17_RS00830 at 194.749 kb on + strand, within HER17_RS00830 at 194.749 kb on + strand, within HER17_RS00830 at 194.749 kb on + strand, within HER17_RS00830 at 194.797 kb on - strand, within HER17_RS00830 at 194.797 kb on - strand, within HER17_RS00830 at 194.834 kb on + strand, within HER17_RS00830 at 194.834 kb on + strand, within HER17_RS00830 at 194.834 kb on + strand, within HER17_RS00830 at 194.834 kb on + strand, within HER17_RS00830 at 194.834 kb on + strand, within HER17_RS00830 at 194.834 kb on + strand, within HER17_RS00830 at 194.835 kb on - strand, within HER17_RS00830 at 194.835 kb on - strand, within HER17_RS00830 at 194.835 kb on - strand, within HER17_RS00830 at 194.945 kb on + strand at 194.946 kb on - strand at 194.972 kb on - strand at 194.994 kb on + strand at 194.994 kb on + strand at 194.994 kb on + strand at 194.994 kb on + strand at 194.994 kb on + strand at 194.995 kb on - strand at 194.995 kb on - strand at 194.995 kb on - strand at 194.995 kb on - strand at 195.004 kb on + strand at 195.005 kb on - strand at 195.005 kb on - strand at 195.005 kb on - strand at 195.005 kb on - strand at 195.010 kb on + strand at 195.010 kb on + strand at 195.010 kb on + strand at 195.010 kb on + strand at 195.041 kb on - strand at 195.050 kb on + strand at 195.050 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 191,695 + HER17_RS00820 0.39 +0.4 191,829 + HER17_RS00820 0.52 -0.3 191,831 + HER17_RS00820 0.52 -0.0 191,831 + HER17_RS00820 0.52 +0.6 191,831 + HER17_RS00820 0.52 +0.2 191,831 + HER17_RS00820 0.52 +0.4 191,832 - HER17_RS00820 0.53 -0.4 191,832 - HER17_RS00820 0.53 -0.4 191,832 - HER17_RS00820 0.53 -0.4 191,832 - HER17_RS00820 0.53 +0.5 191,859 - HER17_RS00820 0.55 +0.1 191,859 - HER17_RS00820 0.55 -0.1 191,879 + HER17_RS00820 0.57 +0.3 191,879 + HER17_RS00820 0.57 -0.3 191,879 + HER17_RS00820 0.57 +1.1 191,879 + HER17_RS00820 0.57 -0.4 191,879 + HER17_RS00820 0.57 +1.0 191,880 - HER17_RS00820 0.57 +0.0 191,880 - HER17_RS00820 0.57 +0.5 191,880 - HER17_RS00820 0.57 -0.1 191,880 - HER17_RS00820 0.57 -0.9 191,880 - HER17_RS00820 0.57 -0.8 191,883 + HER17_RS00820 0.58 +0.2 191,883 + HER17_RS00820 0.58 +0.5 191,883 + HER17_RS00820 0.58 -0.4 191,883 + HER17_RS00820 0.58 -0.1 191,884 - HER17_RS00820 0.58 -0.2 191,884 - HER17_RS00820 0.58 +0.3 191,884 - HER17_RS00820 0.58 +0.3 191,956 + HER17_RS00820 0.65 -0.5 191,956 + HER17_RS00820 0.65 +1.8 191,956 + HER17_RS00820 0.65 -0.4 191,956 + HER17_RS00820 0.65 -0.2 191,957 - HER17_RS00820 0.65 -0.3 191,957 - HER17_RS00820 0.65 -0.5 191,957 - HER17_RS00820 0.65 -0.9 191,957 - HER17_RS00820 0.65 -0.3 191,957 - HER17_RS00820 0.65 -0.8 191,957 - HER17_RS00820 0.65 +0.7 191,957 - HER17_RS00820 0.65 -0.2 191,957 - HER17_RS00820 0.65 +0.7 191,957 - HER17_RS00820 0.65 -0.1 192,072 + HER17_RS00820 0.76 -0.0 192,073 - HER17_RS00820 0.76 +0.3 192,119 + HER17_RS00820 0.81 -1.8 192,120 - HER17_RS00820 0.81 +1.4 192,167 + HER17_RS00820 0.86 +0.7 192,201 + HER17_RS00820 0.89 -0.0 192,202 - HER17_RS00820 0.89 -0.5 192,202 - HER17_RS00820 0.89 +1.1 192,248 + +0.7 192,249 - +0.8 192,250 + +0.2 192,297 + +1.3 192,311 + +0.8 192,311 + -0.2 192,311 + -0.8 192,311 + -1.5 192,312 - -0.4 192,312 - +0.0 192,315 + +0.0 192,315 + -0.6 192,315 + +0.4 192,315 + -0.1 192,316 - -0.4 192,316 - -0.0 192,316 - +0.0 192,316 - -0.5 192,323 + -0.1 192,323 + -0.3 192,324 - -0.3 192,324 - -0.8 192,357 - -1.0 192,364 + +0.1 192,364 + -0.5 192,364 + +0.4 192,364 + +0.0 192,364 + +0.3 192,364 + -0.3 192,364 + +0.2 192,364 + +0.3 192,365 - +0.4 192,365 - +0.6 192,365 - -0.1 192,365 - -0.5 192,365 - -0.0 192,435 - +0.7 192,446 + +0.4 192,460 + -0.6 192,460 + +0.1 192,460 + -0.6 192,460 + +1.5 192,460 + +0.6 192,551 + +0.8 192,551 + -1.1 192,552 - -1.1 192,552 - +0.8 192,900 + HER17_RS00825 0.22 -0.4 192,901 - HER17_RS00825 0.22 -0.1 192,901 - HER17_RS00825 0.22 -0.1 192,901 - HER17_RS00825 0.22 +0.6 192,901 - HER17_RS00825 0.22 -0.6 193,174 + HER17_RS00825 0.40 +0.2 193,178 + HER17_RS00825 0.40 +1.6 193,178 + HER17_RS00825 0.40 -0.9 193,178 + HER17_RS00825 0.40 -0.7 193,178 + HER17_RS00825 0.40 -1.3 193,279 + HER17_RS00825 0.47 -0.2 193,358 + HER17_RS00825 0.52 -0.3 193,359 - HER17_RS00825 0.52 -0.2 193,365 - HER17_RS00825 0.53 +0.5 193,402 + HER17_RS00825 0.55 -0.2 193,583 + HER17_RS00825 0.67 +0.3 193,669 + HER17_RS00825 0.73 +0.8 193,670 - HER17_RS00825 0.73 +0.1 193,670 - HER17_RS00825 0.73 -0.3 193,705 + HER17_RS00825 0.75 -1.2 193,706 - HER17_RS00825 0.75 +0.6 193,706 - HER17_RS00825 0.75 +0.6 193,778 + HER17_RS00825 0.80 -0.2 193,778 + HER17_RS00825 0.80 +1.0 193,780 + HER17_RS00825 0.80 +0.3 193,780 + HER17_RS00825 0.80 +1.2 193,780 + HER17_RS00825 0.80 +1.4 193,780 + HER17_RS00825 0.80 -0.0 193,781 - HER17_RS00825 0.80 +0.7 193,810 - HER17_RS00825 0.82 +0.1 193,812 + HER17_RS00825 0.82 +0.6 193,812 + HER17_RS00825 0.82 -0.5 193,812 + HER17_RS00825 0.82 +0.1 193,813 - HER17_RS00825 0.82 -0.3 193,813 - HER17_RS00825 0.82 +1.3 193,813 - HER17_RS00825 0.82 +0.0 193,813 - HER17_RS00825 0.82 -0.5 193,813 - HER17_RS00825 0.82 -0.3 193,813 - HER17_RS00825 0.82 +0.1 193,839 - HER17_RS00825 0.84 -1.1 193,957 + -1.2 194,013 + -0.6 194,059 + +0.5 194,060 - +0.5 194,078 + -0.4 194,079 - +0.5 194,110 + +0.3 194,111 - -0.4 194,155 + -0.2 194,156 - +0.5 194,271 + HER17_RS00830 0.17 +0.2 194,271 + HER17_RS00830 0.17 +0.5 194,272 - HER17_RS00830 0.17 -0.7 194,272 - HER17_RS00830 0.17 +0.5 194,272 - HER17_RS00830 0.17 -0.2 194,456 - HER17_RS00830 0.39 -0.0 194,531 - HER17_RS00830 0.47 +1.1 194,605 + HER17_RS00830 0.56 +0.0 194,605 + HER17_RS00830 0.56 +0.1 194,605 + HER17_RS00830 0.56 +0.4 194,605 + HER17_RS00830 0.56 +0.6 194,606 - HER17_RS00830 0.56 +0.1 194,606 - HER17_RS00830 0.56 +0.6 194,606 - HER17_RS00830 0.56 -0.1 194,653 - HER17_RS00830 0.62 +0.2 194,700 + HER17_RS00830 0.68 -0.1 194,700 + HER17_RS00830 0.68 -0.3 194,701 - HER17_RS00830 0.68 -0.2 194,701 - HER17_RS00830 0.68 +0.4 194,701 - HER17_RS00830 0.68 -1.4 194,749 + HER17_RS00830 0.73 +2.1 194,749 + HER17_RS00830 0.73 +0.3 194,749 + HER17_RS00830 0.73 -1.0 194,797 - HER17_RS00830 0.79 -0.9 194,797 - HER17_RS00830 0.79 -0.2 194,834 + HER17_RS00830 0.84 -0.3 194,834 + HER17_RS00830 0.84 +0.2 194,834 + HER17_RS00830 0.84 +0.1 194,834 + HER17_RS00830 0.84 +0.3 194,834 + HER17_RS00830 0.84 -1.4 194,834 + HER17_RS00830 0.84 -1.0 194,835 - HER17_RS00830 0.84 +0.2 194,835 - HER17_RS00830 0.84 +0.6 194,835 - HER17_RS00830 0.84 +1.1 194,945 + -0.6 194,946 - +0.0 194,972 - +1.1 194,994 + +0.2 194,994 + -0.5 194,994 + -0.1 194,994 + +0.6 194,994 + +1.3 194,995 - -0.0 194,995 - +0.8 194,995 - -0.9 194,995 - +0.1 195,004 + -1.3 195,005 - -0.6 195,005 - +0.9 195,005 - +0.6 195,005 - -0.4 195,010 + +0.1 195,010 + +0.1 195,010 + +0.6 195,010 + +0.9 195,041 - +0.9 195,050 + -0.3 195,050 + +0.1
Or see this region's nucleotide sequence