Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS00810 and HER17_RS00815 are separated by 17 nucleotides HER17_RS00815 and HER17_RS00820 are separated by 233 nucleotides HER17_RS00820 and HER17_RS00825 are separated by 255 nucleotides
HER17_RS00810: HER17_RS00810 - DUF805 domain-containing protein, at 189,881 to 190,303
_RS00810
HER17_RS00815: HER17_RS00815 - ferredoxin--NADP(+) reductase, at 190,321 to 191,067
_RS00815
HER17_RS00820: HER17_RS00820 - class II fructose-bisphosphatase, at 191,301 to 192,311
_RS00820
HER17_RS00825: HER17_RS00825 - glycerol kinase GlpK, at 192,567 to 194,078
_RS00825
Position (kb) 191
192
193 Strain fitness (log2 ratio) -2
-1
0
1
2 at 190.301 kb on + strand at 190.302 kb on - strand at 190.310 kb on + strand at 190.310 kb on + strand at 190.310 kb on + strand at 190.310 kb on + strand at 190.310 kb on + strand at 190.310 kb on + strand at 190.311 kb on - strand at 190.311 kb on - strand at 190.322 kb on + strand at 190.323 kb on - strand at 190.323 kb on - strand at 190.323 kb on - strand at 190.344 kb on + strand at 190.344 kb on + strand at 190.345 kb on - strand at 190.345 kb on - strand at 190.345 kb on - strand at 190.345 kb on - strand at 190.415 kb on - strand, within HER17_RS00815 at 190.503 kb on + strand, within HER17_RS00815 at 190.504 kb on - strand, within HER17_RS00815 at 190.616 kb on + strand, within HER17_RS00815 at 190.616 kb on + strand, within HER17_RS00815 at 190.660 kb on - strand, within HER17_RS00815 at 190.684 kb on - strand, within HER17_RS00815 at 190.684 kb on - strand, within HER17_RS00815 at 190.684 kb on - strand, within HER17_RS00815 at 190.706 kb on + strand, within HER17_RS00815 at 190.706 kb on + strand, within HER17_RS00815 at 190.707 kb on - strand, within HER17_RS00815 at 190.801 kb on + strand, within HER17_RS00815 at 190.802 kb on - strand, within HER17_RS00815 at 190.802 kb on - strand, within HER17_RS00815 at 190.848 kb on + strand, within HER17_RS00815 at 190.871 kb on + strand, within HER17_RS00815 at 190.871 kb on + strand, within HER17_RS00815 at 190.872 kb on - strand, within HER17_RS00815 at 190.872 kb on - strand, within HER17_RS00815 at 190.907 kb on + strand, within HER17_RS00815 at 190.908 kb on - strand, within HER17_RS00815 at 190.914 kb on - strand, within HER17_RS00815 at 190.914 kb on - strand, within HER17_RS00815 at 191.007 kb on + strand at 191.007 kb on + strand at 191.008 kb on - strand at 191.067 kb on + strand at 191.068 kb on - strand at 191.096 kb on - strand at 191.151 kb on + strand at 191.199 kb on - strand at 191.207 kb on + strand at 191.207 kb on + strand at 191.208 kb on - strand at 191.211 kb on + strand at 191.212 kb on - strand at 191.212 kb on - strand at 191.212 kb on - strand at 191.231 kb on + strand at 191.232 kb on - strand at 191.232 kb on - strand at 191.232 kb on - strand at 191.244 kb on + strand at 191.245 kb on - strand at 191.258 kb on + strand at 191.303 kb on - strand at 191.303 kb on - strand at 191.324 kb on + strand at 191.324 kb on + strand at 191.334 kb on - strand at 191.344 kb on + strand at 191.345 kb on - strand at 191.345 kb on - strand at 191.357 kb on + strand at 191.358 kb on - strand at 191.409 kb on - strand, within HER17_RS00820 at 191.423 kb on + strand, within HER17_RS00820 at 191.424 kb on - strand, within HER17_RS00820 at 191.481 kb on - strand, within HER17_RS00820 at 191.695 kb on + strand, within HER17_RS00820 at 191.829 kb on + strand, within HER17_RS00820 at 191.831 kb on + strand, within HER17_RS00820 at 191.831 kb on + strand, within HER17_RS00820 at 191.831 kb on + strand, within HER17_RS00820 at 191.831 kb on + strand, within HER17_RS00820 at 191.832 kb on - strand, within HER17_RS00820 at 191.832 kb on - strand, within HER17_RS00820 at 191.832 kb on - strand, within HER17_RS00820 at 191.832 kb on - strand, within HER17_RS00820 at 191.859 kb on - strand, within HER17_RS00820 at 191.859 kb on - strand, within HER17_RS00820 at 191.879 kb on + strand, within HER17_RS00820 at 191.879 kb on + strand, within HER17_RS00820 at 191.879 kb on + strand, within HER17_RS00820 at 191.879 kb on + strand, within HER17_RS00820 at 191.879 kb on + strand, within HER17_RS00820 at 191.880 kb on - strand, within HER17_RS00820 at 191.880 kb on - strand, within HER17_RS00820 at 191.880 kb on - strand, within HER17_RS00820 at 191.880 kb on - strand, within HER17_RS00820 at 191.880 kb on - strand, within HER17_RS00820 at 191.883 kb on + strand, within HER17_RS00820 at 191.883 kb on + strand, within HER17_RS00820 at 191.883 kb on + strand, within HER17_RS00820 at 191.883 kb on + strand, within HER17_RS00820 at 191.884 kb on - strand, within HER17_RS00820 at 191.884 kb on - strand, within HER17_RS00820 at 191.884 kb on - strand, within HER17_RS00820 at 191.956 kb on + strand, within HER17_RS00820 at 191.956 kb on + strand, within HER17_RS00820 at 191.956 kb on + strand, within HER17_RS00820 at 191.956 kb on + strand, within HER17_RS00820 at 191.957 kb on - strand, within HER17_RS00820 at 191.957 kb on - strand, within HER17_RS00820 at 191.957 kb on - strand, within HER17_RS00820 at 191.957 kb on - strand, within HER17_RS00820 at 191.957 kb on - strand, within HER17_RS00820 at 191.957 kb on - strand, within HER17_RS00820 at 191.957 kb on - strand, within HER17_RS00820 at 191.957 kb on - strand, within HER17_RS00820 at 191.957 kb on - strand, within HER17_RS00820 at 192.072 kb on + strand, within HER17_RS00820 at 192.073 kb on - strand, within HER17_RS00820 at 192.119 kb on + strand, within HER17_RS00820 at 192.120 kb on - strand, within HER17_RS00820 at 192.167 kb on + strand, within HER17_RS00820 at 192.201 kb on + strand, within HER17_RS00820 at 192.202 kb on - strand, within HER17_RS00820 at 192.202 kb on - strand, within HER17_RS00820 at 192.248 kb on + strand at 192.249 kb on - strand at 192.250 kb on + strand at 192.297 kb on + strand at 192.311 kb on + strand at 192.311 kb on + strand at 192.311 kb on + strand at 192.311 kb on + strand at 192.312 kb on - strand at 192.312 kb on - strand at 192.315 kb on + strand at 192.315 kb on + strand at 192.315 kb on + strand at 192.315 kb on + strand at 192.316 kb on - strand at 192.316 kb on - strand at 192.316 kb on - strand at 192.316 kb on - strand at 192.323 kb on + strand at 192.323 kb on + strand at 192.324 kb on - strand at 192.324 kb on - strand at 192.357 kb on - strand at 192.364 kb on + strand at 192.364 kb on + strand at 192.364 kb on + strand at 192.364 kb on + strand at 192.364 kb on + strand at 192.364 kb on + strand at 192.364 kb on + strand at 192.364 kb on + strand at 192.365 kb on - strand at 192.365 kb on - strand at 192.365 kb on - strand at 192.365 kb on - strand at 192.365 kb on - strand at 192.435 kb on - strand at 192.446 kb on + strand at 192.460 kb on + strand at 192.460 kb on + strand at 192.460 kb on + strand at 192.460 kb on + strand at 192.460 kb on + strand at 192.551 kb on + strand at 192.551 kb on + strand at 192.552 kb on - strand at 192.552 kb on - strand at 192.900 kb on + strand, within HER17_RS00825 at 192.901 kb on - strand, within HER17_RS00825 at 192.901 kb on - strand, within HER17_RS00825 at 192.901 kb on - strand, within HER17_RS00825 at 192.901 kb on - strand, within HER17_RS00825 at 193.174 kb on + strand, within HER17_RS00825 at 193.178 kb on + strand, within HER17_RS00825 at 193.178 kb on + strand, within HER17_RS00825 at 193.178 kb on + strand, within HER17_RS00825 at 193.178 kb on + strand, within HER17_RS00825 at 193.279 kb on + strand, within HER17_RS00825
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 190,301 + +0.2 190,302 - +0.8 190,310 + +1.0 190,310 + +0.0 190,310 + -0.1 190,310 + +0.2 190,310 + -0.2 190,310 + +0.1 190,311 - +1.3 190,311 - -0.3 190,322 + -0.2 190,323 - -0.2 190,323 - -0.8 190,323 - -0.2 190,344 + +0.1 190,344 + +0.7 190,345 - -0.3 190,345 - -0.8 190,345 - -0.1 190,345 - +0.7 190,415 - HER17_RS00815 0.13 +1.2 190,503 + HER17_RS00815 0.24 +0.1 190,504 - HER17_RS00815 0.24 +1.9 190,616 + HER17_RS00815 0.39 -0.2 190,616 + HER17_RS00815 0.39 +0.7 190,660 - HER17_RS00815 0.45 -0.0 190,684 - HER17_RS00815 0.49 +0.1 190,684 - HER17_RS00815 0.49 -1.2 190,684 - HER17_RS00815 0.49 -0.1 190,706 + HER17_RS00815 0.52 -0.6 190,706 + HER17_RS00815 0.52 -1.0 190,707 - HER17_RS00815 0.52 +0.6 190,801 + HER17_RS00815 0.64 +0.7 190,802 - HER17_RS00815 0.64 +0.9 190,802 - HER17_RS00815 0.64 +0.3 190,848 + HER17_RS00815 0.71 -0.6 190,871 + HER17_RS00815 0.74 +0.2 190,871 + HER17_RS00815 0.74 -0.6 190,872 - HER17_RS00815 0.74 +0.1 190,872 - HER17_RS00815 0.74 +1.0 190,907 + HER17_RS00815 0.78 +0.0 190,908 - HER17_RS00815 0.79 -0.7 190,914 - HER17_RS00815 0.79 +0.6 190,914 - HER17_RS00815 0.79 +0.3 191,007 + -0.0 191,007 + +0.6 191,008 - +0.6 191,067 + +0.7 191,068 - -0.0 191,096 - +0.1 191,151 + +0.8 191,199 - +0.3 191,207 + +0.0 191,207 + -0.7 191,208 - +0.4 191,211 + -0.4 191,212 - -1.5 191,212 - -0.8 191,212 - -0.7 191,231 + +0.8 191,232 - +0.5 191,232 - +0.1 191,232 - +0.2 191,244 + -0.5 191,245 - +0.1 191,258 + -0.7 191,303 - -0.3 191,303 - +0.3 191,324 + -0.4 191,324 + -0.2 191,334 - -0.6 191,344 + -0.1 191,345 - -0.3 191,345 - -0.2 191,357 + +0.3 191,358 - -0.7 191,409 - HER17_RS00820 0.11 +1.6 191,423 + HER17_RS00820 0.12 +0.6 191,424 - HER17_RS00820 0.12 -0.3 191,481 - HER17_RS00820 0.18 +0.7 191,695 + HER17_RS00820 0.39 +0.4 191,829 + HER17_RS00820 0.52 -0.3 191,831 + HER17_RS00820 0.52 -0.0 191,831 + HER17_RS00820 0.52 +0.6 191,831 + HER17_RS00820 0.52 +0.2 191,831 + HER17_RS00820 0.52 +0.4 191,832 - HER17_RS00820 0.53 -0.4 191,832 - HER17_RS00820 0.53 -0.4 191,832 - HER17_RS00820 0.53 -0.4 191,832 - HER17_RS00820 0.53 +0.5 191,859 - HER17_RS00820 0.55 +0.1 191,859 - HER17_RS00820 0.55 -0.1 191,879 + HER17_RS00820 0.57 +0.3 191,879 + HER17_RS00820 0.57 -0.3 191,879 + HER17_RS00820 0.57 +1.1 191,879 + HER17_RS00820 0.57 -0.4 191,879 + HER17_RS00820 0.57 +1.0 191,880 - HER17_RS00820 0.57 +0.0 191,880 - HER17_RS00820 0.57 +0.5 191,880 - HER17_RS00820 0.57 -0.1 191,880 - HER17_RS00820 0.57 -0.9 191,880 - HER17_RS00820 0.57 -0.8 191,883 + HER17_RS00820 0.58 +0.2 191,883 + HER17_RS00820 0.58 +0.5 191,883 + HER17_RS00820 0.58 -0.4 191,883 + HER17_RS00820 0.58 -0.1 191,884 - HER17_RS00820 0.58 -0.2 191,884 - HER17_RS00820 0.58 +0.3 191,884 - HER17_RS00820 0.58 +0.3 191,956 + HER17_RS00820 0.65 -0.5 191,956 + HER17_RS00820 0.65 +1.8 191,956 + HER17_RS00820 0.65 -0.4 191,956 + HER17_RS00820 0.65 -0.2 191,957 - HER17_RS00820 0.65 -0.3 191,957 - HER17_RS00820 0.65 -0.5 191,957 - HER17_RS00820 0.65 -0.9 191,957 - HER17_RS00820 0.65 -0.3 191,957 - HER17_RS00820 0.65 -0.8 191,957 - HER17_RS00820 0.65 +0.7 191,957 - HER17_RS00820 0.65 -0.2 191,957 - HER17_RS00820 0.65 +0.7 191,957 - HER17_RS00820 0.65 -0.1 192,072 + HER17_RS00820 0.76 -0.0 192,073 - HER17_RS00820 0.76 +0.3 192,119 + HER17_RS00820 0.81 -1.8 192,120 - HER17_RS00820 0.81 +1.4 192,167 + HER17_RS00820 0.86 +0.7 192,201 + HER17_RS00820 0.89 -0.0 192,202 - HER17_RS00820 0.89 -0.5 192,202 - HER17_RS00820 0.89 +1.1 192,248 + +0.7 192,249 - +0.8 192,250 + +0.2 192,297 + +1.3 192,311 + +0.8 192,311 + -0.2 192,311 + -0.8 192,311 + -1.5 192,312 - -0.4 192,312 - +0.0 192,315 + +0.0 192,315 + -0.6 192,315 + +0.4 192,315 + -0.1 192,316 - -0.4 192,316 - -0.0 192,316 - +0.0 192,316 - -0.5 192,323 + -0.1 192,323 + -0.3 192,324 - -0.3 192,324 - -0.8 192,357 - -1.0 192,364 + +0.1 192,364 + -0.5 192,364 + +0.4 192,364 + +0.0 192,364 + +0.3 192,364 + -0.3 192,364 + +0.2 192,364 + +0.3 192,365 - +0.4 192,365 - +0.6 192,365 - -0.1 192,365 - -0.5 192,365 - -0.0 192,435 - +0.7 192,446 + +0.4 192,460 + -0.6 192,460 + +0.1 192,460 + -0.6 192,460 + +1.5 192,460 + +0.6 192,551 + +0.8 192,551 + -1.1 192,552 - -1.1 192,552 - +0.8 192,900 + HER17_RS00825 0.22 -0.4 192,901 - HER17_RS00825 0.22 -0.1 192,901 - HER17_RS00825 0.22 -0.1 192,901 - HER17_RS00825 0.22 +0.6 192,901 - HER17_RS00825 0.22 -0.6 193,174 + HER17_RS00825 0.40 +0.2 193,178 + HER17_RS00825 0.40 +1.6 193,178 + HER17_RS00825 0.40 -0.9 193,178 + HER17_RS00825 0.40 -0.7 193,178 + HER17_RS00825 0.40 -1.3 193,279 + HER17_RS00825 0.47 -0.2
Or see this region's nucleotide sequence