Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS00655 and HER17_RS00660 are separated by 192 nucleotides HER17_RS00660 and HER17_RS00665 overlap by 4 nucleotides HER17_RS00665 and HER17_RS00670 are separated by 153 nucleotides
HER17_RS00655: HER17_RS00655 - hypothetical protein, at 149,460 to 151,634
_RS00655
HER17_RS00660: HER17_RS00660 - envelope stress sensor histidine kinase CpxA, at 151,827 to 153,197
_RS00660
HER17_RS00665: HER17_RS00665 - envelope stress response regulator transcription factor CpxR, at 153,194 to 153,892
_RS00665
HER17_RS00670: HER17_RS00670 - cell-envelope stress modulator CpxP, at 154,046 to 154,570
_RS00670
Position (kb) 151
152
153
154 Strain fitness (log2 ratio) -2
-1
0
1
2 at 150.833 kb on + strand, within HER17_RS00655 at 150.854 kb on - strand, within HER17_RS00655 at 150.905 kb on + strand, within HER17_RS00655 at 150.905 kb on + strand, within HER17_RS00655 at 150.905 kb on + strand, within HER17_RS00655 at 150.906 kb on - strand, within HER17_RS00655 at 150.906 kb on - strand, within HER17_RS00655 at 150.906 kb on - strand, within HER17_RS00655 at 150.906 kb on - strand, within HER17_RS00655 at 150.906 kb on - strand, within HER17_RS00655 at 150.907 kb on + strand, within HER17_RS00655 at 150.907 kb on + strand, within HER17_RS00655 at 150.907 kb on + strand, within HER17_RS00655 at 150.907 kb on + strand, within HER17_RS00655 at 150.907 kb on + strand, within HER17_RS00655 at 150.908 kb on - strand, within HER17_RS00655 at 150.908 kb on - strand, within HER17_RS00655 at 150.908 kb on - strand, within HER17_RS00655 at 150.908 kb on - strand, within HER17_RS00655 at 151.015 kb on + strand, within HER17_RS00655 at 151.015 kb on + strand, within HER17_RS00655 at 151.016 kb on - strand, within HER17_RS00655 at 151.016 kb on - strand, within HER17_RS00655 at 151.016 kb on - strand, within HER17_RS00655 at 151.050 kb on + strand, within HER17_RS00655 at 151.056 kb on + strand, within HER17_RS00655 at 151.056 kb on + strand, within HER17_RS00655 at 151.056 kb on + strand, within HER17_RS00655 at 151.056 kb on + strand, within HER17_RS00655 at 151.057 kb on - strand, within HER17_RS00655 at 151.057 kb on - strand, within HER17_RS00655 at 151.057 kb on - strand, within HER17_RS00655 at 151.057 kb on - strand, within HER17_RS00655 at 151.057 kb on - strand, within HER17_RS00655 at 151.057 kb on - strand, within HER17_RS00655 at 151.085 kb on + strand, within HER17_RS00655 at 151.086 kb on - strand, within HER17_RS00655 at 151.086 kb on - strand, within HER17_RS00655 at 151.086 kb on - strand, within HER17_RS00655 at 151.087 kb on + strand, within HER17_RS00655 at 151.088 kb on - strand, within HER17_RS00655 at 151.209 kb on - strand, within HER17_RS00655 at 151.247 kb on + strand, within HER17_RS00655 at 151.248 kb on - strand, within HER17_RS00655 at 151.485 kb on - strand at 151.513 kb on + strand at 151.514 kb on - strand at 151.641 kb on + strand at 151.641 kb on + strand at 151.642 kb on - strand at 151.696 kb on - strand at 151.724 kb on + strand at 151.726 kb on + strand at 151.726 kb on + strand at 151.727 kb on - strand at 151.727 kb on - strand at 151.740 kb on + strand at 151.741 kb on - strand at 151.786 kb on + strand at 151.788 kb on + strand at 151.788 kb on + strand at 151.913 kb on + strand at 151.913 kb on + strand at 152.107 kb on + strand, within HER17_RS00660 at 152.244 kb on + strand, within HER17_RS00660 at 152.384 kb on + strand, within HER17_RS00660 at 152.583 kb on + strand, within HER17_RS00660 at 152.584 kb on - strand, within HER17_RS00660 at 152.584 kb on - strand, within HER17_RS00660 at 152.776 kb on + strand, within HER17_RS00660 at 152.776 kb on + strand, within HER17_RS00660 at 153.021 kb on - strand, within HER17_RS00660 at 153.189 kb on - strand at 153.189 kb on - strand at 153.216 kb on + strand at 153.239 kb on - strand at 153.292 kb on + strand, within HER17_RS00665 at 153.292 kb on + strand, within HER17_RS00665 at 153.292 kb on + strand, within HER17_RS00665 at 153.292 kb on + strand, within HER17_RS00665 at 153.292 kb on + strand, within HER17_RS00665 at 153.292 kb on + strand, within HER17_RS00665 at 153.292 kb on + strand, within HER17_RS00665 at 153.292 kb on + strand, within HER17_RS00665 at 153.293 kb on - strand, within HER17_RS00665 at 153.293 kb on - strand, within HER17_RS00665 at 153.293 kb on - strand, within HER17_RS00665 at 153.293 kb on - strand, within HER17_RS00665 at 153.293 kb on - strand, within HER17_RS00665 at 153.336 kb on - strand, within HER17_RS00665 at 153.396 kb on + strand, within HER17_RS00665 at 153.476 kb on + strand, within HER17_RS00665 at 153.477 kb on - strand, within HER17_RS00665 at 153.477 kb on - strand, within HER17_RS00665 at 153.477 kb on - strand, within HER17_RS00665 at 153.477 kb on - strand, within HER17_RS00665 at 153.587 kb on - strand, within HER17_RS00665 at 153.604 kb on - strand, within HER17_RS00665 at 153.667 kb on + strand, within HER17_RS00665 at 153.667 kb on + strand, within HER17_RS00665 at 153.668 kb on - strand, within HER17_RS00665 at 153.695 kb on + strand, within HER17_RS00665 at 153.696 kb on - strand, within HER17_RS00665 at 153.696 kb on - strand, within HER17_RS00665 at 153.705 kb on - strand, within HER17_RS00665 at 153.709 kb on + strand, within HER17_RS00665 at 153.709 kb on + strand, within HER17_RS00665 at 153.709 kb on + strand, within HER17_RS00665 at 153.743 kb on + strand, within HER17_RS00665 at 153.743 kb on + strand, within HER17_RS00665 at 153.744 kb on - strand, within HER17_RS00665 at 153.744 kb on - strand, within HER17_RS00665 at 153.744 kb on - strand, within HER17_RS00665 at 153.746 kb on + strand, within HER17_RS00665 at 153.747 kb on - strand, within HER17_RS00665 at 153.747 kb on - strand, within HER17_RS00665 at 153.747 kb on - strand, within HER17_RS00665 at 153.750 kb on - strand, within HER17_RS00665 at 153.750 kb on - strand, within HER17_RS00665 at 153.750 kb on - strand, within HER17_RS00665 at 153.767 kb on - strand, within HER17_RS00665 at 153.767 kb on - strand, within HER17_RS00665 at 153.770 kb on + strand, within HER17_RS00665 at 153.770 kb on + strand, within HER17_RS00665 at 153.770 kb on + strand, within HER17_RS00665 at 153.770 kb on + strand, within HER17_RS00665 at 153.770 kb on + strand, within HER17_RS00665 at 153.771 kb on - strand, within HER17_RS00665 at 153.771 kb on - strand, within HER17_RS00665 at 153.771 kb on - strand, within HER17_RS00665 at 153.771 kb on - strand, within HER17_RS00665 at 153.771 kb on - strand, within HER17_RS00665 at 153.771 kb on - strand, within HER17_RS00665 at 153.771 kb on - strand, within HER17_RS00665 at 153.771 kb on - strand, within HER17_RS00665 at 153.773 kb on + strand, within HER17_RS00665 at 153.774 kb on - strand, within HER17_RS00665 at 153.774 kb on - strand, within HER17_RS00665 at 153.779 kb on + strand, within HER17_RS00665 at 153.799 kb on - strand, within HER17_RS00665 at 153.814 kb on + strand, within HER17_RS00665 at 153.815 kb on - strand, within HER17_RS00665 at 153.815 kb on - strand, within HER17_RS00665 at 153.815 kb on - strand, within HER17_RS00665 at 153.863 kb on - strand at 153.886 kb on + strand at 153.918 kb on + strand at 153.925 kb on + strand at 153.925 kb on + strand at 153.925 kb on + strand at 153.926 kb on - strand at 153.937 kb on - strand at 153.949 kb on + strand at 153.950 kb on - strand at 153.950 kb on - strand at 153.950 kb on - strand at 153.950 kb on - strand at 153.960 kb on - strand at 153.960 kb on - strand at 153.960 kb on - strand at 153.960 kb on - strand at 153.993 kb on + strand at 154.026 kb on - strand at 154.041 kb on + strand at 154.041 kb on + strand at 154.041 kb on + strand at 154.041 kb on + strand at 154.042 kb on - strand at 154.042 kb on - strand at 154.042 kb on - strand at 154.065 kb on + strand at 154.065 kb on + strand at 154.065 kb on + strand at 154.065 kb on + strand at 154.065 kb on + strand at 154.065 kb on + strand at 154.065 kb on + strand at 154.066 kb on - strand at 154.066 kb on - strand at 154.084 kb on + strand at 154.084 kb on + strand at 154.084 kb on + strand at 154.084 kb on + strand at 154.084 kb on + strand at 154.085 kb on - strand at 154.085 kb on - strand at 154.085 kb on - strand at 154.085 kb on - strand at 154.085 kb on - strand at 154.085 kb on - strand at 154.089 kb on + strand at 154.147 kb on + strand, within HER17_RS00670 at 154.189 kb on + strand, within HER17_RS00670 at 154.189 kb on + strand, within HER17_RS00670 at 154.189 kb on + strand, within HER17_RS00670 at 154.190 kb on - strand, within HER17_RS00670 at 154.190 kb on - strand, within HER17_RS00670 at 154.190 kb on - strand, within HER17_RS00670 at 154.190 kb on - strand, within HER17_RS00670 at 154.190 kb on - strand, within HER17_RS00670 at 154.190 kb on - strand, within HER17_RS00670 at 154.190 kb on - strand, within HER17_RS00670
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 150,833 + HER17_RS00655 0.63 +0.2 150,854 - HER17_RS00655 0.64 -0.2 150,905 + HER17_RS00655 0.66 +0.1 150,905 + HER17_RS00655 0.66 -0.5 150,905 + HER17_RS00655 0.66 +0.4 150,906 - HER17_RS00655 0.66 +0.8 150,906 - HER17_RS00655 0.66 -0.0 150,906 - HER17_RS00655 0.66 +0.1 150,906 - HER17_RS00655 0.66 -0.1 150,906 - HER17_RS00655 0.66 +0.7 150,907 + HER17_RS00655 0.67 -0.3 150,907 + HER17_RS00655 0.67 +0.1 150,907 + HER17_RS00655 0.67 +0.8 150,907 + HER17_RS00655 0.67 +0.2 150,907 + HER17_RS00655 0.67 -0.1 150,908 - HER17_RS00655 0.67 +1.0 150,908 - HER17_RS00655 0.67 +0.7 150,908 - HER17_RS00655 0.67 -0.2 150,908 - HER17_RS00655 0.67 -0.0 151,015 + HER17_RS00655 0.71 +0.6 151,015 + HER17_RS00655 0.71 +0.6 151,016 - HER17_RS00655 0.72 -0.3 151,016 - HER17_RS00655 0.72 -0.3 151,016 - HER17_RS00655 0.72 +0.2 151,050 + HER17_RS00655 0.73 +0.1 151,056 + HER17_RS00655 0.73 -0.0 151,056 + HER17_RS00655 0.73 -0.7 151,056 + HER17_RS00655 0.73 -0.3 151,056 + HER17_RS00655 0.73 +0.9 151,057 - HER17_RS00655 0.73 -1.6 151,057 - HER17_RS00655 0.73 +0.2 151,057 - HER17_RS00655 0.73 +0.6 151,057 - HER17_RS00655 0.73 -1.2 151,057 - HER17_RS00655 0.73 +0.7 151,057 - HER17_RS00655 0.73 +1.7 151,085 + HER17_RS00655 0.75 +0.3 151,086 - HER17_RS00655 0.75 -0.6 151,086 - HER17_RS00655 0.75 -0.2 151,086 - HER17_RS00655 0.75 -0.0 151,087 + HER17_RS00655 0.75 +0.4 151,088 - HER17_RS00655 0.75 -0.7 151,209 - HER17_RS00655 0.80 -0.4 151,247 + HER17_RS00655 0.82 +0.7 151,248 - HER17_RS00655 0.82 -0.7 151,485 - -2.6 151,513 + +0.0 151,514 - -0.3 151,641 + +0.0 151,641 + +1.5 151,642 - +1.2 151,696 - -0.1 151,724 + +0.2 151,726 + +0.3 151,726 + -0.2 151,727 - -0.3 151,727 - +0.1 151,740 + +0.0 151,741 - +0.4 151,786 + +0.3 151,788 + -1.1 151,788 + -0.0 151,913 + +0.8 151,913 + -0.4 152,107 + HER17_RS00660 0.20 +0.1 152,244 + HER17_RS00660 0.30 -0.4 152,384 + HER17_RS00660 0.41 -0.4 152,583 + HER17_RS00660 0.55 +1.3 152,584 - HER17_RS00660 0.55 -2.7 152,584 - HER17_RS00660 0.55 -1.3 152,776 + HER17_RS00660 0.69 +0.3 152,776 + HER17_RS00660 0.69 -0.6 153,021 - HER17_RS00660 0.87 -0.7 153,189 - +1.0 153,189 - +0.1 153,216 + -0.5 153,239 - -0.1 153,292 + HER17_RS00665 0.14 -0.5 153,292 + HER17_RS00665 0.14 -0.7 153,292 + HER17_RS00665 0.14 -0.2 153,292 + HER17_RS00665 0.14 -0.4 153,292 + HER17_RS00665 0.14 -1.1 153,292 + HER17_RS00665 0.14 +0.5 153,292 + HER17_RS00665 0.14 +0.9 153,292 + HER17_RS00665 0.14 -0.5 153,293 - HER17_RS00665 0.14 +0.1 153,293 - HER17_RS00665 0.14 +0.4 153,293 - HER17_RS00665 0.14 -0.2 153,293 - HER17_RS00665 0.14 -0.4 153,293 - HER17_RS00665 0.14 +0.6 153,336 - HER17_RS00665 0.20 -0.2 153,396 + HER17_RS00665 0.29 +0.5 153,476 + HER17_RS00665 0.40 +0.6 153,477 - HER17_RS00665 0.40 +0.8 153,477 - HER17_RS00665 0.40 -0.1 153,477 - HER17_RS00665 0.40 +0.0 153,477 - HER17_RS00665 0.40 -0.2 153,587 - HER17_RS00665 0.56 -0.8 153,604 - HER17_RS00665 0.59 -0.8 153,667 + HER17_RS00665 0.68 +1.1 153,667 + HER17_RS00665 0.68 +1.2 153,668 - HER17_RS00665 0.68 +0.7 153,695 + HER17_RS00665 0.72 -0.1 153,696 - HER17_RS00665 0.72 -0.3 153,696 - HER17_RS00665 0.72 -0.5 153,705 - HER17_RS00665 0.73 -0.4 153,709 + HER17_RS00665 0.74 +0.0 153,709 + HER17_RS00665 0.74 +1.4 153,709 + HER17_RS00665 0.74 +0.3 153,743 + HER17_RS00665 0.79 -0.9 153,743 + HER17_RS00665 0.79 +0.3 153,744 - HER17_RS00665 0.79 -0.7 153,744 - HER17_RS00665 0.79 +0.3 153,744 - HER17_RS00665 0.79 +0.5 153,746 + HER17_RS00665 0.79 -0.7 153,747 - HER17_RS00665 0.79 +0.5 153,747 - HER17_RS00665 0.79 +0.4 153,747 - HER17_RS00665 0.79 +0.1 153,750 - HER17_RS00665 0.80 +0.6 153,750 - HER17_RS00665 0.80 +0.4 153,750 - HER17_RS00665 0.80 +0.2 153,767 - HER17_RS00665 0.82 +0.1 153,767 - HER17_RS00665 0.82 -0.6 153,770 + HER17_RS00665 0.82 -0.1 153,770 + HER17_RS00665 0.82 -1.3 153,770 + HER17_RS00665 0.82 -0.6 153,770 + HER17_RS00665 0.82 -1.0 153,770 + HER17_RS00665 0.82 +0.6 153,771 - HER17_RS00665 0.83 -0.0 153,771 - HER17_RS00665 0.83 +0.4 153,771 - HER17_RS00665 0.83 +0.2 153,771 - HER17_RS00665 0.83 -0.2 153,771 - HER17_RS00665 0.83 -0.3 153,771 - HER17_RS00665 0.83 -0.6 153,771 - HER17_RS00665 0.83 +0.2 153,771 - HER17_RS00665 0.83 +0.1 153,773 + HER17_RS00665 0.83 +0.1 153,774 - HER17_RS00665 0.83 +0.3 153,774 - HER17_RS00665 0.83 -0.7 153,779 + HER17_RS00665 0.84 -0.7 153,799 - HER17_RS00665 0.87 +0.3 153,814 + HER17_RS00665 0.89 -0.2 153,815 - HER17_RS00665 0.89 -0.5 153,815 - HER17_RS00665 0.89 -0.4 153,815 - HER17_RS00665 0.89 -0.5 153,863 - -0.6 153,886 + -1.1 153,918 + +0.3 153,925 + -0.6 153,925 + +0.0 153,925 + +0.1 153,926 - +0.3 153,937 - +0.3 153,949 + +0.1 153,950 - -0.2 153,950 - +1.1 153,950 - +0.4 153,950 - +0.6 153,960 - +0.7 153,960 - -1.6 153,960 - -0.5 153,960 - -0.2 153,993 + +0.3 154,026 - -0.7 154,041 + -0.7 154,041 + +0.3 154,041 + +1.4 154,041 + -0.2 154,042 - +0.7 154,042 - +0.1 154,042 - -1.0 154,065 + +0.2 154,065 + +0.4 154,065 + +0.6 154,065 + +0.1 154,065 + +0.1 154,065 + +0.3 154,065 + +1.3 154,066 - +0.2 154,066 - +0.2 154,084 + +1.0 154,084 + +1.6 154,084 + -1.0 154,084 + -0.5 154,084 + -0.1 154,085 - -0.5 154,085 - -0.2 154,085 - +0.2 154,085 - -0.1 154,085 - +0.0 154,085 - -0.1 154,089 + +1.4 154,147 + HER17_RS00670 0.19 +0.3 154,189 + HER17_RS00670 0.27 +0.9 154,189 + HER17_RS00670 0.27 +1.1 154,189 + HER17_RS00670 0.27 +0.1 154,190 - HER17_RS00670 0.27 -0.0 154,190 - HER17_RS00670 0.27 -0.4 154,190 - HER17_RS00670 0.27 +1.0 154,190 - HER17_RS00670 0.27 +1.8 154,190 - HER17_RS00670 0.27 -1.2 154,190 - HER17_RS00670 0.27 +1.4 154,190 - HER17_RS00670 0.27 +0.5
Or see this region's nucleotide sequence