Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS00340

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS00335 and HER17_RS00340 overlap by 11 nucleotidesHER17_RS00340 and HER17_RS00345 are separated by 41 nucleotides HER17_RS00335: HER17_RS00335 - thiamine pyrophosphate-dependent enzyme, at 75,974 to 77,686 _RS00335 HER17_RS00340: HER17_RS00340 - hypothetical protein, at 77,676 to 78,653 _RS00340 HER17_RS00345: HER17_RS00345 - ketoacyl-ACP synthase III, at 78,695 to 79,675 _RS00345 Position (kb) 77 78 79Strain fitness (log2 ratio) -1 0 1 2at 76.786 kb on - strand, within HER17_RS00335at 76.819 kb on - strand, within HER17_RS00335at 76.819 kb on - strand, within HER17_RS00335at 76.841 kb on - strand, within HER17_RS00335at 77.066 kb on + strand, within HER17_RS00335at 77.067 kb on - strand, within HER17_RS00335at 77.093 kb on - strand, within HER17_RS00335at 77.122 kb on + strand, within HER17_RS00335at 77.123 kb on - strand, within HER17_RS00335at 77.128 kb on + strand, within HER17_RS00335at 77.166 kb on - strand, within HER17_RS00335at 77.273 kb on + strand, within HER17_RS00335at 77.273 kb on + strand, within HER17_RS00335at 77.274 kb on - strand, within HER17_RS00335at 77.329 kb on + strand, within HER17_RS00335at 77.330 kb on - strand, within HER17_RS00335at 77.356 kb on + strand, within HER17_RS00335at 77.357 kb on - strand, within HER17_RS00335at 77.365 kb on + strand, within HER17_RS00335at 77.365 kb on + strand, within HER17_RS00335at 77.365 kb on + strand, within HER17_RS00335at 77.365 kb on + strand, within HER17_RS00335at 77.365 kb on + strand, within HER17_RS00335at 77.366 kb on - strand, within HER17_RS00335at 77.366 kb on - strand, within HER17_RS00335at 77.366 kb on - strand, within HER17_RS00335at 77.368 kb on + strand, within HER17_RS00335at 77.368 kb on + strand, within HER17_RS00335at 77.369 kb on - strand, within HER17_RS00335at 77.369 kb on - strand, within HER17_RS00335at 77.369 kb on - strand, within HER17_RS00335at 77.419 kb on + strand, within HER17_RS00335at 77.423 kb on + strand, within HER17_RS00335at 77.423 kb on + strand, within HER17_RS00335at 77.423 kb on + strand, within HER17_RS00335at 77.423 kb on + strand, within HER17_RS00335at 77.423 kb on + strand, within HER17_RS00335at 77.424 kb on - strand, within HER17_RS00335at 77.428 kb on + strand, within HER17_RS00335at 77.428 kb on + strand, within HER17_RS00335at 77.428 kb on + strand, within HER17_RS00335at 77.428 kb on + strand, within HER17_RS00335at 77.428 kb on + strand, within HER17_RS00335at 77.428 kb on + strand, within HER17_RS00335at 77.429 kb on - strand, within HER17_RS00335at 77.429 kb on - strand, within HER17_RS00335at 77.429 kb on - strand, within HER17_RS00335at 77.429 kb on - strand, within HER17_RS00335at 77.429 kb on - strand, within HER17_RS00335at 77.429 kb on - strand, within HER17_RS00335at 77.429 kb on - strand, within HER17_RS00335at 77.628 kb on + strandat 77.687 kb on + strandat 77.687 kb on + strandat 77.687 kb on + strandat 77.688 kb on - strandat 77.688 kb on - strandat 77.688 kb on - strandat 77.732 kb on - strandat 77.758 kb on + strandat 77.758 kb on + strandat 77.764 kb on + strandat 77.852 kb on + strand, within HER17_RS00340at 77.879 kb on - strand, within HER17_RS00340at 77.879 kb on - strand, within HER17_RS00340at 77.937 kb on - strand, within HER17_RS00340at 77.941 kb on + strand, within HER17_RS00340at 77.941 kb on + strand, within HER17_RS00340at 77.941 kb on + strand, within HER17_RS00340at 78.075 kb on + strand, within HER17_RS00340at 78.075 kb on + strand, within HER17_RS00340at 78.075 kb on + strand, within HER17_RS00340at 78.076 kb on - strand, within HER17_RS00340at 78.102 kb on + strand, within HER17_RS00340at 78.223 kb on - strand, within HER17_RS00340at 78.224 kb on + strand, within HER17_RS00340at 78.262 kb on - strand, within HER17_RS00340at 78.296 kb on - strand, within HER17_RS00340at 78.299 kb on + strand, within HER17_RS00340at 78.323 kb on + strand, within HER17_RS00340at 78.341 kb on - strand, within HER17_RS00340at 78.341 kb on - strand, within HER17_RS00340at 78.341 kb on - strand, within HER17_RS00340at 78.386 kb on + strand, within HER17_RS00340at 78.390 kb on + strand, within HER17_RS00340at 78.390 kb on + strand, within HER17_RS00340at 78.474 kb on + strand, within HER17_RS00340at 78.475 kb on - strand, within HER17_RS00340at 78.652 kb on - strandat 78.654 kb on + strandat 78.726 kb on + strandat 78.727 kb on - strandat 78.738 kb on + strandat 78.738 kb on + strandat 78.804 kb on + strand, within HER17_RS00345at 78.805 kb on - strand, within HER17_RS00345at 78.807 kb on + strand, within HER17_RS00345at 78.905 kb on - strand, within HER17_RS00345at 79.029 kb on - strand, within HER17_RS00345at 79.034 kb on - strand, within HER17_RS00345at 79.060 kb on + strand, within HER17_RS00345at 79.060 kb on + strand, within HER17_RS00345at 79.078 kb on - strand, within HER17_RS00345at 79.137 kb on - strand, within HER17_RS00345at 79.137 kb on - strand, within HER17_RS00345at 79.150 kb on + strand, within HER17_RS00345at 79.150 kb on + strand, within HER17_RS00345at 79.151 kb on - strand, within HER17_RS00345at 79.151 kb on - strand, within HER17_RS00345at 79.151 kb on - strand, within HER17_RS00345at 79.155 kb on - strand, within HER17_RS00345at 79.155 kb on - strand, within HER17_RS00345at 79.170 kb on - strand, within HER17_RS00345at 79.198 kb on - strand, within HER17_RS00345at 79.203 kb on + strand, within HER17_RS00345at 79.210 kb on - strand, within HER17_RS00345at 79.309 kb on + strand, within HER17_RS00345at 79.310 kb on - strand, within HER17_RS00345at 79.310 kb on - strand, within HER17_RS00345at 79.369 kb on + strand, within HER17_RS00345at 79.370 kb on - strand, within HER17_RS00345at 79.392 kb on + strand, within HER17_RS00345at 79.424 kb on - strand, within HER17_RS00345at 79.435 kb on + strand, within HER17_RS00345at 79.435 kb on + strand, within HER17_RS00345at 79.436 kb on - strand, within HER17_RS00345at 79.486 kb on + strand, within HER17_RS00345at 79.555 kb on + strand, within HER17_RS00345at 79.556 kb on - strand, within HER17_RS00345at 79.573 kb on - strand, within HER17_RS00345at 79.590 kb on + strandat 79.599 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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76,786 - HER17_RS00335 0.47 -0.4
76,819 - HER17_RS00335 0.49 -0.1
76,819 - HER17_RS00335 0.49 -0.2
76,841 - HER17_RS00335 0.51 -0.9
77,066 + HER17_RS00335 0.64 +1.1
77,067 - HER17_RS00335 0.64 +0.1
77,093 - HER17_RS00335 0.65 -0.4
77,122 + HER17_RS00335 0.67 +0.0
77,123 - HER17_RS00335 0.67 +1.1
77,128 + HER17_RS00335 0.67 -0.3
77,166 - HER17_RS00335 0.70 -0.6
77,273 + HER17_RS00335 0.76 -0.4
77,273 + HER17_RS00335 0.76 -0.3
77,274 - HER17_RS00335 0.76 +0.3
77,329 + HER17_RS00335 0.79 +0.9
77,330 - HER17_RS00335 0.79 +0.2
77,356 + HER17_RS00335 0.81 -0.0
77,357 - HER17_RS00335 0.81 +0.1
77,365 + HER17_RS00335 0.81 +1.6
77,365 + HER17_RS00335 0.81 +0.7
77,365 + HER17_RS00335 0.81 +0.4
77,365 + HER17_RS00335 0.81 -0.5
77,365 + HER17_RS00335 0.81 +0.8
77,366 - HER17_RS00335 0.81 -0.0
77,366 - HER17_RS00335 0.81 -0.2
77,366 - HER17_RS00335 0.81 +0.2
77,368 + HER17_RS00335 0.81 +0.4
77,368 + HER17_RS00335 0.81 -0.2
77,369 - HER17_RS00335 0.81 -0.1
77,369 - HER17_RS00335 0.81 -1.0
77,369 - HER17_RS00335 0.81 -0.5
77,419 + HER17_RS00335 0.84 -0.5
77,423 + HER17_RS00335 0.85 +0.6
77,423 + HER17_RS00335 0.85 +0.1
77,423 + HER17_RS00335 0.85 -1.1
77,423 + HER17_RS00335 0.85 +1.4
77,423 + HER17_RS00335 0.85 -0.2
77,424 - HER17_RS00335 0.85 +0.3
77,428 + HER17_RS00335 0.85 +0.1
77,428 + HER17_RS00335 0.85 -0.6
77,428 + HER17_RS00335 0.85 -0.2
77,428 + HER17_RS00335 0.85 -0.4
77,428 + HER17_RS00335 0.85 -0.0
77,428 + HER17_RS00335 0.85 -0.5
77,429 - HER17_RS00335 0.85 +0.2
77,429 - HER17_RS00335 0.85 +0.3
77,429 - HER17_RS00335 0.85 -0.9
77,429 - HER17_RS00335 0.85 +0.8
77,429 - HER17_RS00335 0.85 -0.2
77,429 - HER17_RS00335 0.85 -0.3
77,429 - HER17_RS00335 0.85 +0.4
77,628 + -0.3
77,687 + +1.0
77,687 + -0.1
77,687 + +0.1
77,688 - +0.5
77,688 - +0.3
77,688 - +1.0
77,732 - +0.0
77,758 + +0.1
77,758 + +1.1
77,764 + -0.1
77,852 + HER17_RS00340 0.18 +0.2
77,879 - HER17_RS00340 0.21 -0.8
77,879 - HER17_RS00340 0.21 +0.1
77,937 - HER17_RS00340 0.27 +1.3
77,941 + HER17_RS00340 0.27 -0.0
77,941 + HER17_RS00340 0.27 +0.5
77,941 + HER17_RS00340 0.27 +0.2
78,075 + HER17_RS00340 0.41 +0.8
78,075 + HER17_RS00340 0.41 +0.2
78,075 + HER17_RS00340 0.41 -0.3
78,076 - HER17_RS00340 0.41 -0.2
78,102 + HER17_RS00340 0.44 -1.0
78,223 - HER17_RS00340 0.56 -0.2
78,224 + HER17_RS00340 0.56 +0.3
78,262 - HER17_RS00340 0.60 +0.5
78,296 - HER17_RS00340 0.63 -0.8
78,299 + HER17_RS00340 0.64 -0.1
78,323 + HER17_RS00340 0.66 +0.7
78,341 - HER17_RS00340 0.68 -0.7
78,341 - HER17_RS00340 0.68 -0.2
78,341 - HER17_RS00340 0.68 -0.0
78,386 + HER17_RS00340 0.73 -0.2
78,390 + HER17_RS00340 0.73 +0.7
78,390 + HER17_RS00340 0.73 +0.3
78,474 + HER17_RS00340 0.82 +1.0
78,475 - HER17_RS00340 0.82 -0.1
78,652 - +0.8
78,654 + +1.0
78,726 + -0.5
78,727 - -0.3
78,738 + +0.3
78,738 + +1.4
78,804 + HER17_RS00345 0.11 -0.8
78,805 - HER17_RS00345 0.11 -0.7
78,807 + HER17_RS00345 0.11 +0.5
78,905 - HER17_RS00345 0.21 -0.1
79,029 - HER17_RS00345 0.34 +0.9
79,034 - HER17_RS00345 0.35 +0.7
79,060 + HER17_RS00345 0.37 +0.2
79,060 + HER17_RS00345 0.37 -0.2
79,078 - HER17_RS00345 0.39 +0.8
79,137 - HER17_RS00345 0.45 +0.6
79,137 - HER17_RS00345 0.45 +0.1
79,150 + HER17_RS00345 0.46 +0.2
79,150 + HER17_RS00345 0.46 +0.5
79,151 - HER17_RS00345 0.46 +0.0
79,151 - HER17_RS00345 0.46 +0.6
79,151 - HER17_RS00345 0.46 -0.4
79,155 - HER17_RS00345 0.47 +0.4
79,155 - HER17_RS00345 0.47 +0.3
79,170 - HER17_RS00345 0.48 +0.8
79,198 - HER17_RS00345 0.51 -0.4
79,203 + HER17_RS00345 0.52 +0.0
79,210 - HER17_RS00345 0.52 -0.3
79,309 + HER17_RS00345 0.63 -0.2
79,310 - HER17_RS00345 0.63 -0.2
79,310 - HER17_RS00345 0.63 +2.0
79,369 + HER17_RS00345 0.69 +0.6
79,370 - HER17_RS00345 0.69 +0.2
79,392 + HER17_RS00345 0.71 -0.2
79,424 - HER17_RS00345 0.74 +0.4
79,435 + HER17_RS00345 0.75 -0.4
79,435 + HER17_RS00345 0.75 -0.0
79,436 - HER17_RS00345 0.76 -0.2
79,486 + HER17_RS00345 0.81 +0.1
79,555 + HER17_RS00345 0.88 -0.1
79,556 - HER17_RS00345 0.88 -0.2
79,573 - HER17_RS00345 0.90 +0.8
79,590 + -0.3
79,599 + +0.5

Or see this region's nucleotide sequence