Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS00240

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS00230 and HER17_RS00235 are separated by 13 nucleotidesHER17_RS00235 and HER17_RS00240 overlap by 4 nucleotidesHER17_RS00240 and HER17_RS00245 are separated by 87 nucleotidesHER17_RS00245 and HER17_RS00250 are separated by 227 nucleotides HER17_RS00230: HER17_RS00230 - dipeptide ABC transporter permease DppC, at 52,080 to 52,982 _RS00230 HER17_RS00235: HER17_RS00235 - dipeptide ABC transporter ATP-binding protein, at 52,996 to 53,976 _RS00235 HER17_RS00240: HER17_RS00240 - ABC transporter ATP-binding protein, at 53,973 to 54,983 _RS00240 HER17_RS00245: HER17_RS00245 - hypothetical protein, at 55,071 to 55,550 _RS00245 HER17_RS00250: HER17_RS00250 - hypothetical protein, at 55,778 to 56,116 _RS00250 Position (kb) 53 54 55Strain fitness (log2 ratio) -2 -1 0 1 2at 52.981 kb on - strandat 52.981 kb on - strandat 52.983 kb on + strandat 52.984 kb on - strandat 52.984 kb on - strandat 52.984 kb on - strandat 52.989 kb on + strandat 53.012 kb on + strandat 53.013 kb on - strandat 53.013 kb on - strandat 53.013 kb on - strandat 53.013 kb on - strandat 53.013 kb on - strandat 53.013 kb on - strandat 53.013 kb on - strandat 53.017 kb on - strandat 53.077 kb on + strandat 53.078 kb on - strandat 53.171 kb on - strand, within HER17_RS00235at 53.248 kb on - strand, within HER17_RS00235at 53.252 kb on + strand, within HER17_RS00235at 53.252 kb on + strand, within HER17_RS00235at 53.311 kb on + strand, within HER17_RS00235at 53.311 kb on + strand, within HER17_RS00235at 53.312 kb on - strand, within HER17_RS00235at 53.626 kb on - strand, within HER17_RS00235at 53.626 kb on - strand, within HER17_RS00235at 53.678 kb on - strand, within HER17_RS00235at 53.678 kb on - strand, within HER17_RS00235at 53.678 kb on - strand, within HER17_RS00235at 53.741 kb on - strand, within HER17_RS00235at 53.742 kb on + strand, within HER17_RS00235at 53.784 kb on + strand, within HER17_RS00235at 53.784 kb on + strand, within HER17_RS00235at 53.784 kb on + strand, within HER17_RS00235at 53.784 kb on + strand, within HER17_RS00235at 53.785 kb on - strand, within HER17_RS00235at 53.827 kb on + strand, within HER17_RS00235at 53.828 kb on - strand, within HER17_RS00235at 53.828 kb on - strand, within HER17_RS00235at 53.852 kb on + strand, within HER17_RS00235at 53.870 kb on - strand, within HER17_RS00235at 53.940 kb on + strandat 53.941 kb on - strandat 53.941 kb on - strandat 53.972 kb on + strandat 53.972 kb on + strandat 53.973 kb on - strandat 54.003 kb on + strandat 54.003 kb on + strandat 54.003 kb on + strandat 54.037 kb on - strandat 54.210 kb on + strand, within HER17_RS00240at 54.210 kb on + strand, within HER17_RS00240at 54.210 kb on + strand, within HER17_RS00240at 54.210 kb on + strand, within HER17_RS00240at 54.211 kb on - strand, within HER17_RS00240at 54.211 kb on - strand, within HER17_RS00240at 54.211 kb on - strand, within HER17_RS00240at 54.213 kb on + strand, within HER17_RS00240at 54.214 kb on - strand, within HER17_RS00240at 54.297 kb on + strand, within HER17_RS00240at 54.318 kb on - strand, within HER17_RS00240at 54.318 kb on - strand, within HER17_RS00240at 54.435 kb on + strand, within HER17_RS00240at 54.435 kb on + strand, within HER17_RS00240at 54.435 kb on + strand, within HER17_RS00240at 54.435 kb on + strand, within HER17_RS00240at 54.436 kb on - strand, within HER17_RS00240at 54.436 kb on - strand, within HER17_RS00240at 54.436 kb on - strand, within HER17_RS00240at 54.452 kb on + strand, within HER17_RS00240at 54.452 kb on + strand, within HER17_RS00240at 54.453 kb on - strand, within HER17_RS00240at 54.453 kb on - strand, within HER17_RS00240at 54.453 kb on - strand, within HER17_RS00240at 54.453 kb on - strand, within HER17_RS00240at 54.480 kb on - strand, within HER17_RS00240at 54.615 kb on + strand, within HER17_RS00240at 54.615 kb on + strand, within HER17_RS00240at 54.616 kb on - strand, within HER17_RS00240at 54.653 kb on + strand, within HER17_RS00240at 54.653 kb on + strand, within HER17_RS00240at 54.653 kb on + strand, within HER17_RS00240at 54.654 kb on - strand, within HER17_RS00240at 54.678 kb on + strand, within HER17_RS00240at 54.678 kb on + strand, within HER17_RS00240at 54.678 kb on + strand, within HER17_RS00240at 54.679 kb on - strand, within HER17_RS00240at 54.679 kb on - strand, within HER17_RS00240at 54.679 kb on - strand, within HER17_RS00240at 54.679 kb on - strand, within HER17_RS00240at 54.679 kb on - strand, within HER17_RS00240at 54.707 kb on + strand, within HER17_RS00240at 54.743 kb on + strand, within HER17_RS00240at 54.743 kb on + strand, within HER17_RS00240at 54.755 kb on - strand, within HER17_RS00240at 54.755 kb on - strand, within HER17_RS00240at 54.824 kb on + strand, within HER17_RS00240at 54.911 kb on + strandat 54.919 kb on - strandat 54.919 kb on - strandat 54.968 kb on + strandat 54.969 kb on - strandat 54.981 kb on + strandat 54.981 kb on + strandat 55.002 kb on - strandat 55.002 kb on - strandat 55.063 kb on + strandat 55.086 kb on - strandat 55.174 kb on - strand, within HER17_RS00245at 55.199 kb on + strand, within HER17_RS00245at 55.229 kb on + strand, within HER17_RS00245at 55.461 kb on + strand, within HER17_RS00245at 55.584 kb on - strandat 55.622 kb on + strandat 55.627 kb on + strandat 55.627 kb on + strandat 55.627 kb on + strandat 55.628 kb on - strandat 55.631 kb on + strandat 55.631 kb on + strandat 55.631 kb on + strandat 55.631 kb on + strandat 55.632 kb on - strandat 55.632 kb on - strandat 55.632 kb on - strandat 55.632 kb on - strandat 55.646 kb on - strandat 55.664 kb on - strandat 55.857 kb on + strand, within HER17_RS00250at 55.914 kb on + strand, within HER17_RS00250at 55.914 kb on + strand, within HER17_RS00250at 55.915 kb on - strand, within HER17_RS00250at 55.915 kb on - strand, within HER17_RS00250

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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52,981 - -0.5
52,981 - -1.4
52,983 + -0.6
52,984 - +0.6
52,984 - -0.5
52,984 - +0.2
52,989 + +0.1
53,012 + +0.7
53,013 - +0.5
53,013 - +1.1
53,013 - +0.1
53,013 - +0.9
53,013 - -0.2
53,013 - +0.8
53,013 - +0.6
53,017 - -0.5
53,077 + -0.8
53,078 - +0.2
53,171 - HER17_RS00235 0.18 +0.2
53,248 - HER17_RS00235 0.26 +0.6
53,252 + HER17_RS00235 0.26 +0.7
53,252 + HER17_RS00235 0.26 +0.8
53,311 + HER17_RS00235 0.32 -0.3
53,311 + HER17_RS00235 0.32 +0.2
53,312 - HER17_RS00235 0.32 +0.0
53,626 - HER17_RS00235 0.64 -0.2
53,626 - HER17_RS00235 0.64 -0.6
53,678 - HER17_RS00235 0.70 +0.1
53,678 - HER17_RS00235 0.70 +0.2
53,678 - HER17_RS00235 0.70 -0.7
53,741 - HER17_RS00235 0.76 +1.1
53,742 + HER17_RS00235 0.76 +0.7
53,784 + HER17_RS00235 0.80 +0.1
53,784 + HER17_RS00235 0.80 +0.3
53,784 + HER17_RS00235 0.80 +0.2
53,784 + HER17_RS00235 0.80 -0.4
53,785 - HER17_RS00235 0.80 +0.2
53,827 + HER17_RS00235 0.85 +0.8
53,828 - HER17_RS00235 0.85 +0.0
53,828 - HER17_RS00235 0.85 -0.6
53,852 + HER17_RS00235 0.87 +0.1
53,870 - HER17_RS00235 0.89 +0.2
53,940 + -0.6
53,941 - -0.3
53,941 - -0.2
53,972 + +0.0
53,972 + +0.3
53,973 - -0.1
54,003 + +0.4
54,003 + +0.7
54,003 + +1.5
54,037 - +0.1
54,210 + HER17_RS00240 0.23 -0.4
54,210 + HER17_RS00240 0.23 -0.6
54,210 + HER17_RS00240 0.23 +0.2
54,210 + HER17_RS00240 0.23 +0.8
54,211 - HER17_RS00240 0.24 +1.8
54,211 - HER17_RS00240 0.24 -0.7
54,211 - HER17_RS00240 0.24 -0.7
54,213 + HER17_RS00240 0.24 +0.9
54,214 - HER17_RS00240 0.24 -0.2
54,297 + HER17_RS00240 0.32 +0.8
54,318 - HER17_RS00240 0.34 +0.1
54,318 - HER17_RS00240 0.34 -0.2
54,435 + HER17_RS00240 0.46 +0.3
54,435 + HER17_RS00240 0.46 -1.1
54,435 + HER17_RS00240 0.46 +0.4
54,435 + HER17_RS00240 0.46 -0.5
54,436 - HER17_RS00240 0.46 +0.4
54,436 - HER17_RS00240 0.46 +0.8
54,436 - HER17_RS00240 0.46 -0.0
54,452 + HER17_RS00240 0.47 -0.6
54,452 + HER17_RS00240 0.47 +0.2
54,453 - HER17_RS00240 0.47 -0.8
54,453 - HER17_RS00240 0.47 -0.1
54,453 - HER17_RS00240 0.47 +1.2
54,453 - HER17_RS00240 0.47 -0.5
54,480 - HER17_RS00240 0.50 -0.1
54,615 + HER17_RS00240 0.64 +0.1
54,615 + HER17_RS00240 0.64 +0.4
54,616 - HER17_RS00240 0.64 -0.0
54,653 + HER17_RS00240 0.67 -0.0
54,653 + HER17_RS00240 0.67 -1.9
54,653 + HER17_RS00240 0.67 +0.8
54,654 - HER17_RS00240 0.67 -0.2
54,678 + HER17_RS00240 0.70 +0.6
54,678 + HER17_RS00240 0.70 +0.1
54,678 + HER17_RS00240 0.70 -0.3
54,679 - HER17_RS00240 0.70 +0.4
54,679 - HER17_RS00240 0.70 -0.3
54,679 - HER17_RS00240 0.70 +0.2
54,679 - HER17_RS00240 0.70 -0.8
54,679 - HER17_RS00240 0.70 +0.8
54,707 + HER17_RS00240 0.73 +0.2
54,743 + HER17_RS00240 0.76 -0.0
54,743 + HER17_RS00240 0.76 -0.5
54,755 - HER17_RS00240 0.77 -0.2
54,755 - HER17_RS00240 0.77 +0.0
54,824 + HER17_RS00240 0.84 -0.2
54,911 + -0.0
54,919 - +1.4
54,919 - +0.4
54,968 + +0.7
54,969 - -0.5
54,981 + +1.8
54,981 + -0.1
55,002 - +0.3
55,002 - -0.0
55,063 + -0.6
55,086 - -0.1
55,174 - HER17_RS00245 0.21 -0.9
55,199 + HER17_RS00245 0.27 -0.2
55,229 + HER17_RS00245 0.33 +0.2
55,461 + HER17_RS00245 0.81 +0.8
55,584 - +0.1
55,622 + +0.8
55,627 + -0.4
55,627 + +0.5
55,627 + +0.1
55,628 - +0.6
55,631 + -0.2
55,631 + -0.1
55,631 + -0.5
55,631 + +0.0
55,632 - +1.3
55,632 - -0.7
55,632 - +0.1
55,632 - -1.3
55,646 - +0.2
55,664 - -0.4
55,857 + HER17_RS00250 0.23 -0.1
55,914 + HER17_RS00250 0.40 -1.2
55,914 + HER17_RS00250 0.40 -0.3
55,915 - HER17_RS00250 0.40 +0.0
55,915 - HER17_RS00250 0.40 +0.7

Or see this region's nucleotide sequence