Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS00125

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHER17_RS00120 and HER17_RS00125 are separated by 75 nucleotidesHER17_RS00125 and HER17_RS00130 are separated by 172 nucleotidesHER17_RS00130 and HER17_RS00135 overlap by 4 nucleotides HER17_RS00120: HER17_RS00120 - ABC transporter ATP-binding protein, at 25,217 to 27,022 _RS00120 HER17_RS00125: HER17_RS00125 - DUF1471 domain-containing protein, at 27,098 to 27,355 _RS00125 HER17_RS00130: HER17_RS00130 - aliphatic sulfonates ABC transporter ATP-binding protein, at 27,528 to 28,328 _RS00130 HER17_RS00135: HER17_RS00135 - aliphatic sulfonate ABC transporter permease SsuC, at 28,325 to 29,119 _RS00135 Position (kb) 27 28Strain fitness (log2 ratio) -3 -2 -1 0 1at 26.409 kb on - strand, within HER17_RS00120at 26.409 kb on - strand, within HER17_RS00120at 26.446 kb on + strand, within HER17_RS00120at 26.494 kb on + strand, within HER17_RS00120at 26.597 kb on - strand, within HER17_RS00120at 26.632 kb on + strand, within HER17_RS00120at 26.632 kb on + strand, within HER17_RS00120at 26.734 kb on + strand, within HER17_RS00120at 26.734 kb on + strand, within HER17_RS00120at 26.765 kb on - strand, within HER17_RS00120at 26.789 kb on + strand, within HER17_RS00120at 26.789 kb on + strand, within HER17_RS00120at 26.911 kb on + strandat 26.911 kb on + strandat 26.912 kb on - strandat 26.914 kb on + strandat 26.978 kb on + strandat 26.979 kb on - strandat 26.980 kb on + strandat 26.980 kb on + strandat 26.981 kb on - strandat 27.099 kb on + strandat 27.099 kb on + strandat 27.100 kb on - strandat 27.110 kb on - strandat 27.110 kb on - strandat 27.239 kb on + strand, within HER17_RS00125at 27.239 kb on + strand, within HER17_RS00125at 27.239 kb on + strand, within HER17_RS00125at 27.239 kb on + strand, within HER17_RS00125at 27.239 kb on + strand, within HER17_RS00125at 27.240 kb on - strand, within HER17_RS00125at 27.240 kb on - strand, within HER17_RS00125at 27.240 kb on - strand, within HER17_RS00125at 27.259 kb on + strand, within HER17_RS00125at 27.259 kb on + strand, within HER17_RS00125at 27.260 kb on - strand, within HER17_RS00125at 27.260 kb on - strand, within HER17_RS00125at 27.314 kb on - strand, within HER17_RS00125at 27.362 kb on + strandat 27.362 kb on + strandat 27.363 kb on - strandat 27.500 kb on + strandat 27.500 kb on + strandat 27.501 kb on - strandat 27.529 kb on + strandat 27.529 kb on + strandat 27.529 kb on + strandat 27.531 kb on + strandat 27.531 kb on + strandat 27.531 kb on + strandat 27.532 kb on - strandat 27.549 kb on + strandat 27.707 kb on + strand, within HER17_RS00130at 27.707 kb on + strand, within HER17_RS00130at 27.762 kb on + strand, within HER17_RS00130at 27.763 kb on - strand, within HER17_RS00130at 27.763 kb on - strand, within HER17_RS00130at 27.763 kb on - strand, within HER17_RS00130at 27.987 kb on + strand, within HER17_RS00130at 27.988 kb on - strand, within HER17_RS00130

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
26,409 - HER17_RS00120 0.66 +0.3
26,409 - HER17_RS00120 0.66 -0.1
26,446 + HER17_RS00120 0.68 -0.1
26,494 + HER17_RS00120 0.71 +0.3
26,597 - HER17_RS00120 0.76 -1.2
26,632 + HER17_RS00120 0.78 +0.2
26,632 + HER17_RS00120 0.78 +0.0
26,734 + HER17_RS00120 0.84 -0.2
26,734 + HER17_RS00120 0.84 +0.3
26,765 - HER17_RS00120 0.86 -0.5
26,789 + HER17_RS00120 0.87 -1.4
26,789 + HER17_RS00120 0.87 +0.6
26,911 + -0.4
26,911 + +1.1
26,912 - -0.2
26,914 + -0.1
26,978 + -0.4
26,979 - +1.4
26,980 + -0.5
26,980 + +0.1
26,981 - -1.0
27,099 + -0.3
27,099 + -1.0
27,100 - -0.2
27,110 - +0.7
27,110 - -0.3
27,239 + HER17_RS00125 0.55 +0.3
27,239 + HER17_RS00125 0.55 +0.1
27,239 + HER17_RS00125 0.55 +0.2
27,239 + HER17_RS00125 0.55 -0.7
27,239 + HER17_RS00125 0.55 -0.5
27,240 - HER17_RS00125 0.55 -0.1
27,240 - HER17_RS00125 0.55 -0.2
27,240 - HER17_RS00125 0.55 -0.3
27,259 + HER17_RS00125 0.62 -0.6
27,259 + HER17_RS00125 0.62 -0.4
27,260 - HER17_RS00125 0.63 -0.5
27,260 - HER17_RS00125 0.63 +1.2
27,314 - HER17_RS00125 0.84 +0.3
27,362 + -0.4
27,362 + +0.0
27,363 - -0.2
27,500 + -2.0
27,500 + +0.9
27,501 - -0.1
27,529 + -2.9
27,529 + -0.4
27,529 + -0.4
27,531 + +1.3
27,531 + +0.5
27,531 + -0.1
27,532 - -0.7
27,549 + +0.1
27,707 + HER17_RS00130 0.22 +0.6
27,707 + HER17_RS00130 0.22 -0.3
27,762 + HER17_RS00130 0.29 +0.1
27,763 - HER17_RS00130 0.29 -0.1
27,763 - HER17_RS00130 0.29 +0.1
27,763 - HER17_RS00130 0.29 +0.2
27,987 + HER17_RS00130 0.57 -0.3
27,988 - HER17_RS00130 0.57 -0.5

Or see this region's nucleotide sequence