Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS00050 and HER17_RS00055 overlap by 11 nucleotides HER17_RS00055 and HER17_RS00060 are separated by 36 nucleotides HER17_RS00060 and HER17_RS00065 are separated by 155 nucleotides
HER17_RS00050: HER17_RS00050 - PTS sugar transporter subunit IIC, at 11,788 to 13,101
_RS00050
HER17_RS00055: HER17_RS00055 - PTS lactose/cellobiose transporter subunit IIA, at 13,091 to 13,432
_RS00055
HER17_RS00060: HER17_RS00060 - 6-phospho-beta-glucosidase, at 13,469 to 14,911
_RS00060
HER17_RS00065: HER17_RS00065 - sugar-phosphatase, at 15,067 to 15,882
_RS00065
Position (kb) 13
14
15 Strain fitness (log2 ratio) -2
-1
0
1 at 12.479 kb on + strand, within HER17_RS00050 at 12.479 kb on + strand, within HER17_RS00050 at 12.601 kb on - strand, within HER17_RS00050 at 12.657 kb on + strand, within HER17_RS00050 at 12.822 kb on + strand, within HER17_RS00050 at 12.831 kb on + strand, within HER17_RS00050 at 12.832 kb on - strand, within HER17_RS00050 at 12.865 kb on + strand, within HER17_RS00050 at 12.865 kb on + strand, within HER17_RS00050 at 12.865 kb on + strand, within HER17_RS00050 at 12.865 kb on + strand, within HER17_RS00050 at 12.865 kb on + strand, within HER17_RS00050 at 12.865 kb on + strand, within HER17_RS00050 at 12.865 kb on + strand, within HER17_RS00050 at 12.865 kb on + strand, within HER17_RS00050 at 12.865 kb on + strand, within HER17_RS00050 at 12.865 kb on + strand, within HER17_RS00050 at 12.866 kb on - strand, within HER17_RS00050 at 12.866 kb on - strand, within HER17_RS00050 at 12.866 kb on - strand, within HER17_RS00050 at 12.866 kb on - strand, within HER17_RS00050 at 12.868 kb on - strand, within HER17_RS00050 at 13.010 kb on + strand at 13.015 kb on + strand at 13.015 kb on + strand at 13.015 kb on + strand at 13.015 kb on + strand at 13.015 kb on + strand at 13.015 kb on + strand at 13.015 kb on + strand at 13.016 kb on - strand at 13.016 kb on - strand at 13.016 kb on - strand at 13.016 kb on - strand at 13.019 kb on - strand at 13.029 kb on + strand at 13.030 kb on - strand at 13.037 kb on - strand at 13.069 kb on - strand at 13.126 kb on - strand, within HER17_RS00055 at 13.126 kb on - strand, within HER17_RS00055 at 13.138 kb on + strand, within HER17_RS00055 at 13.138 kb on + strand, within HER17_RS00055 at 13.138 kb on + strand, within HER17_RS00055 at 13.139 kb on - strand, within HER17_RS00055 at 13.142 kb on + strand, within HER17_RS00055 at 13.359 kb on + strand, within HER17_RS00055 at 13.359 kb on + strand, within HER17_RS00055 at 13.360 kb on - strand, within HER17_RS00055 at 13.423 kb on + strand at 13.424 kb on - strand at 13.441 kb on - strand at 13.465 kb on + strand at 13.465 kb on + strand at 13.465 kb on + strand at 13.465 kb on + strand at 13.466 kb on - strand at 13.626 kb on + strand, within HER17_RS00060 at 13.681 kb on + strand, within HER17_RS00060 at 13.682 kb on - strand, within HER17_RS00060 at 13.690 kb on + strand, within HER17_RS00060 at 13.691 kb on - strand, within HER17_RS00060 at 13.802 kb on + strand, within HER17_RS00060 at 13.802 kb on + strand, within HER17_RS00060 at 13.802 kb on + strand, within HER17_RS00060 at 13.802 kb on + strand, within HER17_RS00060 at 13.803 kb on - strand, within HER17_RS00060 at 13.803 kb on - strand, within HER17_RS00060 at 13.803 kb on - strand, within HER17_RS00060 at 13.832 kb on + strand, within HER17_RS00060 at 13.832 kb on + strand, within HER17_RS00060 at 13.833 kb on - strand, within HER17_RS00060 at 13.852 kb on + strand, within HER17_RS00060 at 13.853 kb on - strand, within HER17_RS00060 at 13.916 kb on - strand, within HER17_RS00060 at 13.982 kb on + strand, within HER17_RS00060 at 13.983 kb on - strand, within HER17_RS00060 at 14.018 kb on - strand, within HER17_RS00060 at 14.018 kb on - strand, within HER17_RS00060 at 14.043 kb on - strand, within HER17_RS00060 at 14.205 kb on - strand, within HER17_RS00060 at 14.306 kb on + strand, within HER17_RS00060 at 14.306 kb on + strand, within HER17_RS00060 at 14.306 kb on + strand, within HER17_RS00060 at 14.306 kb on + strand, within HER17_RS00060 at 14.306 kb on + strand, within HER17_RS00060 at 14.348 kb on - strand, within HER17_RS00060 at 14.394 kb on - strand, within HER17_RS00060 at 14.404 kb on + strand, within HER17_RS00060 at 14.404 kb on + strand, within HER17_RS00060 at 14.404 kb on + strand, within HER17_RS00060 at 14.405 kb on - strand, within HER17_RS00060 at 14.405 kb on - strand, within HER17_RS00060 at 14.408 kb on + strand, within HER17_RS00060 at 14.411 kb on + strand, within HER17_RS00060 at 14.411 kb on + strand, within HER17_RS00060 at 14.411 kb on + strand, within HER17_RS00060 at 14.412 kb on - strand, within HER17_RS00060 at 14.412 kb on - strand, within HER17_RS00060 at 14.551 kb on + strand, within HER17_RS00060 at 14.552 kb on - strand, within HER17_RS00060 at 14.552 kb on - strand, within HER17_RS00060 at 14.552 kb on - strand, within HER17_RS00060 at 14.567 kb on + strand, within HER17_RS00060 at 14.567 kb on + strand, within HER17_RS00060 at 14.567 kb on + strand, within HER17_RS00060 at 14.567 kb on + strand, within HER17_RS00060 at 14.644 kb on + strand, within HER17_RS00060 at 14.645 kb on - strand, within HER17_RS00060 at 14.648 kb on - strand, within HER17_RS00060 at 14.648 kb on - strand, within HER17_RS00060 at 14.648 kb on - strand, within HER17_RS00060 at 14.735 kb on + strand, within HER17_RS00060 at 14.736 kb on - strand, within HER17_RS00060 at 14.736 kb on - strand, within HER17_RS00060 at 14.736 kb on - strand, within HER17_RS00060 at 14.783 kb on + strand at 14.783 kb on + strand at 14.783 kb on + strand at 14.875 kb on + strand at 14.875 kb on + strand at 14.875 kb on + strand at 14.876 kb on - strand at 14.876 kb on - strand at 14.876 kb on - strand at 14.907 kb on + strand at 14.907 kb on + strand at 14.907 kb on + strand at 14.908 kb on - strand at 14.908 kb on - strand at 14.908 kb on - strand at 14.909 kb on + strand at 14.979 kb on + strand at 14.980 kb on - strand at 14.980 kb on - strand at 14.980 kb on - strand at 14.980 kb on - strand at 14.980 kb on - strand at 14.999 kb on - strand at 15.031 kb on + strand at 15.067 kb on - strand at 15.067 kb on - strand at 15.067 kb on - strand at 15.067 kb on - strand at 15.087 kb on + strand at 15.088 kb on - strand at 15.093 kb on + strand at 15.093 kb on + strand at 15.177 kb on - strand, within HER17_RS00065 at 15.189 kb on - strand, within HER17_RS00065 at 15.205 kb on + strand, within HER17_RS00065 at 15.205 kb on + strand, within HER17_RS00065 at 15.205 kb on + strand, within HER17_RS00065 at 15.205 kb on + strand, within HER17_RS00065 at 15.205 kb on + strand, within HER17_RS00065 at 15.205 kb on + strand, within HER17_RS00065 at 15.206 kb on - strand, within HER17_RS00065 at 15.206 kb on - strand, within HER17_RS00065 at 15.206 kb on - strand, within HER17_RS00065 at 15.259 kb on + strand, within HER17_RS00065 at 15.260 kb on - strand, within HER17_RS00065 at 15.343 kb on + strand, within HER17_RS00065 at 15.343 kb on + strand, within HER17_RS00065 at 15.344 kb on - strand, within HER17_RS00065 at 15.344 kb on - strand, within HER17_RS00065 at 15.370 kb on - strand, within HER17_RS00065 at 15.412 kb on + strand, within HER17_RS00065 at 15.439 kb on + strand, within HER17_RS00065 at 15.439 kb on + strand, within HER17_RS00065 at 15.439 kb on + strand, within HER17_RS00065 at 15.440 kb on - strand, within HER17_RS00065 at 15.481 kb on + strand, within HER17_RS00065 at 15.481 kb on + strand, within HER17_RS00065 at 15.481 kb on + strand, within HER17_RS00065 at 15.482 kb on - strand, within HER17_RS00065 at 15.575 kb on + strand, within HER17_RS00065 at 15.598 kb on + strand, within HER17_RS00065 at 15.599 kb on - strand, within HER17_RS00065 at 15.599 kb on - strand, within HER17_RS00065 at 15.599 kb on - strand, within HER17_RS00065 at 15.599 kb on - strand, within HER17_RS00065 at 15.600 kb on + strand, within HER17_RS00065 at 15.600 kb on + strand, within HER17_RS00065 at 15.600 kb on + strand, within HER17_RS00065 at 15.601 kb on - strand, within HER17_RS00065 at 15.601 kb on - strand, within HER17_RS00065 at 15.601 kb on - strand, within HER17_RS00065 at 15.601 kb on - strand, within HER17_RS00065 at 15.601 kb on - strand, within HER17_RS00065 at 15.623 kb on - strand, within HER17_RS00065 at 15.626 kb on - strand, within HER17_RS00065 at 15.892 kb on + strand at 15.892 kb on + strand at 15.893 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 12,479 + HER17_RS00050 0.53 +0.5 12,479 + HER17_RS00050 0.53 -0.2 12,601 - HER17_RS00050 0.62 +0.3 12,657 + HER17_RS00050 0.66 +0.3 12,822 + HER17_RS00050 0.79 -0.2 12,831 + HER17_RS00050 0.79 +0.3 12,832 - HER17_RS00050 0.79 -2.0 12,865 + HER17_RS00050 0.82 -1.6 12,865 + HER17_RS00050 0.82 -0.7 12,865 + HER17_RS00050 0.82 -0.8 12,865 + HER17_RS00050 0.82 +0.8 12,865 + HER17_RS00050 0.82 +0.1 12,865 + HER17_RS00050 0.82 +0.3 12,865 + HER17_RS00050 0.82 -0.1 12,865 + HER17_RS00050 0.82 -0.2 12,865 + HER17_RS00050 0.82 -0.2 12,865 + HER17_RS00050 0.82 +0.2 12,866 - HER17_RS00050 0.82 -0.6 12,866 - HER17_RS00050 0.82 -0.3 12,866 - HER17_RS00050 0.82 -0.7 12,866 - HER17_RS00050 0.82 -1.0 12,868 - HER17_RS00050 0.82 -0.4 13,010 + -0.5 13,015 + +0.6 13,015 + +0.2 13,015 + -0.9 13,015 + +1.0 13,015 + +0.5 13,015 + -0.6 13,015 + -0.0 13,016 - -0.3 13,016 - +0.6 13,016 - -0.0 13,016 - +0.1 13,019 - +0.0 13,029 + +0.4 13,030 - -1.1 13,037 - +0.3 13,069 - -0.5 13,126 - HER17_RS00055 0.10 +0.1 13,126 - HER17_RS00055 0.10 +0.3 13,138 + HER17_RS00055 0.14 +0.1 13,138 + HER17_RS00055 0.14 +0.5 13,138 + HER17_RS00055 0.14 -0.7 13,139 - HER17_RS00055 0.14 +0.2 13,142 + HER17_RS00055 0.15 -1.3 13,359 + HER17_RS00055 0.78 -1.2 13,359 + HER17_RS00055 0.78 -0.8 13,360 - HER17_RS00055 0.79 -0.3 13,423 + +0.2 13,424 - +0.5 13,441 - -0.7 13,465 + -0.9 13,465 + +0.5 13,465 + -0.5 13,465 + +0.4 13,466 - -0.3 13,626 + HER17_RS00060 0.11 +0.2 13,681 + HER17_RS00060 0.15 -0.3 13,682 - HER17_RS00060 0.15 -0.9 13,690 + HER17_RS00060 0.15 -0.5 13,691 - HER17_RS00060 0.15 -0.7 13,802 + HER17_RS00060 0.23 +0.7 13,802 + HER17_RS00060 0.23 -0.2 13,802 + HER17_RS00060 0.23 -0.7 13,802 + HER17_RS00060 0.23 -0.1 13,803 - HER17_RS00060 0.23 -0.2 13,803 - HER17_RS00060 0.23 -1.6 13,803 - HER17_RS00060 0.23 +0.2 13,832 + HER17_RS00060 0.25 -0.2 13,832 + HER17_RS00060 0.25 -0.6 13,833 - HER17_RS00060 0.25 +1.2 13,852 + HER17_RS00060 0.27 -0.0 13,853 - HER17_RS00060 0.27 -0.1 13,916 - HER17_RS00060 0.31 +1.6 13,982 + HER17_RS00060 0.36 -0.7 13,983 - HER17_RS00060 0.36 +0.5 14,018 - HER17_RS00060 0.38 -0.0 14,018 - HER17_RS00060 0.38 -0.3 14,043 - HER17_RS00060 0.40 +0.2 14,205 - HER17_RS00060 0.51 -0.3 14,306 + HER17_RS00060 0.58 -0.2 14,306 + HER17_RS00060 0.58 +0.1 14,306 + HER17_RS00060 0.58 -0.6 14,306 + HER17_RS00060 0.58 -0.0 14,306 + HER17_RS00060 0.58 -1.0 14,348 - HER17_RS00060 0.61 -1.0 14,394 - HER17_RS00060 0.64 +0.1 14,404 + HER17_RS00060 0.65 -0.2 14,404 + HER17_RS00060 0.65 +0.2 14,404 + HER17_RS00060 0.65 -0.2 14,405 - HER17_RS00060 0.65 +0.1 14,405 - HER17_RS00060 0.65 +0.1 14,408 + HER17_RS00060 0.65 -0.5 14,411 + HER17_RS00060 0.65 -0.1 14,411 + HER17_RS00060 0.65 -0.6 14,411 + HER17_RS00060 0.65 -0.8 14,412 - HER17_RS00060 0.65 -0.1 14,412 - HER17_RS00060 0.65 +0.1 14,551 + HER17_RS00060 0.75 -0.4 14,552 - HER17_RS00060 0.75 +0.0 14,552 - HER17_RS00060 0.75 -0.4 14,552 - HER17_RS00060 0.75 -0.8 14,567 + HER17_RS00060 0.76 -0.1 14,567 + HER17_RS00060 0.76 +0.4 14,567 + HER17_RS00060 0.76 -0.2 14,567 + HER17_RS00060 0.76 -0.9 14,644 + HER17_RS00060 0.81 -0.2 14,645 - HER17_RS00060 0.81 -0.9 14,648 - HER17_RS00060 0.82 +0.2 14,648 - HER17_RS00060 0.82 +0.2 14,648 - HER17_RS00060 0.82 +0.1 14,735 + HER17_RS00060 0.88 -0.7 14,736 - HER17_RS00060 0.88 +0.7 14,736 - HER17_RS00060 0.88 +0.3 14,736 - HER17_RS00060 0.88 +0.1 14,783 + -1.6 14,783 + +0.2 14,783 + +1.5 14,875 + +0.8 14,875 + +0.0 14,875 + -0.2 14,876 - +0.1 14,876 - +0.1 14,876 - -2.0 14,907 + -0.3 14,907 + -0.1 14,907 + -0.6 14,908 - -0.2 14,908 - +0.1 14,908 - +1.0 14,909 + +0.2 14,979 + +0.1 14,980 - -0.1 14,980 - +0.6 14,980 - +0.5 14,980 - +0.5 14,980 - -0.6 14,999 - +0.1 15,031 + -0.3 15,067 - -0.7 15,067 - +1.4 15,067 - -0.4 15,067 - +0.1 15,087 + -0.2 15,088 - +0.4 15,093 + -0.4 15,093 + -0.6 15,177 - HER17_RS00065 0.13 +0.6 15,189 - HER17_RS00065 0.15 -0.7 15,205 + HER17_RS00065 0.17 -0.2 15,205 + HER17_RS00065 0.17 -0.1 15,205 + HER17_RS00065 0.17 +0.8 15,205 + HER17_RS00065 0.17 -0.5 15,205 + HER17_RS00065 0.17 +0.3 15,205 + HER17_RS00065 0.17 -1.2 15,206 - HER17_RS00065 0.17 -0.2 15,206 - HER17_RS00065 0.17 -0.5 15,206 - HER17_RS00065 0.17 -1.1 15,259 + HER17_RS00065 0.24 -0.3 15,260 - HER17_RS00065 0.24 -1.4 15,343 + HER17_RS00065 0.34 -0.4 15,343 + HER17_RS00065 0.34 -0.1 15,344 - HER17_RS00065 0.34 +0.3 15,344 - HER17_RS00065 0.34 +0.4 15,370 - HER17_RS00065 0.37 -0.7 15,412 + HER17_RS00065 0.42 +0.4 15,439 + HER17_RS00065 0.46 -0.2 15,439 + HER17_RS00065 0.46 -0.4 15,439 + HER17_RS00065 0.46 -0.6 15,440 - HER17_RS00065 0.46 -0.7 15,481 + HER17_RS00065 0.51 +0.5 15,481 + HER17_RS00065 0.51 +0.0 15,481 + HER17_RS00065 0.51 +0.1 15,482 - HER17_RS00065 0.51 +0.3 15,575 + HER17_RS00065 0.62 +0.2 15,598 + HER17_RS00065 0.65 -0.3 15,599 - HER17_RS00065 0.65 +0.0 15,599 - HER17_RS00065 0.65 -0.7 15,599 - HER17_RS00065 0.65 +0.3 15,599 - HER17_RS00065 0.65 -0.8 15,600 + HER17_RS00065 0.65 -0.3 15,600 + HER17_RS00065 0.65 -0.0 15,600 + HER17_RS00065 0.65 -0.6 15,601 - HER17_RS00065 0.65 -0.9 15,601 - HER17_RS00065 0.65 -0.2 15,601 - HER17_RS00065 0.65 -0.8 15,601 - HER17_RS00065 0.65 -0.4 15,601 - HER17_RS00065 0.65 -1.1 15,623 - HER17_RS00065 0.68 -0.1 15,626 - HER17_RS00065 0.69 -0.4 15,892 + -0.6 15,892 + +0.2 15,893 - -0.9
Or see this region's nucleotide sequence