Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS20935 and HER17_RS20940 are separated by 278 nucleotides HER17_RS20940 and HER17_RS20945 are separated by 47 nucleotides HER17_RS20945 and HER17_RS20950 are separated by 113 nucleotides HER17_RS20950 and HER17_RS20955 are separated by 42 nucleotides HER17_RS20955 and HER17_RS20960 overlap by 76 nucleotides
HER17_RS20935: HER17_RS20935 - class I SAM-dependent methyltransferase, at 4,686,623 to 4,687,417
_RS20935
HER17_RS20940: HER17_RS20940 - hypothetical protein, at 4,687,696 to 4,688,253
_RS20940
HER17_RS20945: HER17_RS20945 - hypothetical protein, at 4,688,301 to 4,688,846
_RS20945
HER17_RS20950: HER17_RS20950 - hypothetical protein, at 4,688,960 to 4,689,346
_RS20950
HER17_RS20955: HER17_RS20955 - DUF596 domain-containing protein, at 4,689,389 to 4,689,838
_RS20955
HER17_RS20960: HER17_RS20960 - AI-2E family transporter, at 4,689,763 to 4,690,977
_RS20960
Position (kb) 4688
4689 Strain fitness (log2 ratio) -1
0
1
2 at 4687.344 kb on + strand at 4687.385 kb on - strand at 4687.400 kb on - strand at 4687.404 kb on + strand at 4687.404 kb on + strand at 4687.404 kb on + strand at 4687.404 kb on + strand at 4687.404 kb on + strand at 4687.405 kb on - strand at 4687.405 kb on - strand at 4687.408 kb on + strand at 4687.408 kb on + strand at 4687.409 kb on - strand at 4687.432 kb on + strand at 4687.432 kb on + strand at 4687.433 kb on - strand at 4687.433 kb on - strand at 4687.461 kb on + strand at 4687.487 kb on - strand at 4687.487 kb on - strand at 4687.497 kb on + strand at 4687.505 kb on - strand at 4687.505 kb on - strand at 4687.505 kb on - strand at 4687.516 kb on - strand at 4687.528 kb on + strand at 4687.528 kb on + strand at 4687.532 kb on - strand at 4687.588 kb on - strand at 4687.590 kb on + strand at 4687.591 kb on - strand at 4687.591 kb on - strand at 4687.591 kb on - strand at 4687.591 kb on - strand at 4687.734 kb on - strand at 4687.764 kb on + strand, within HER17_RS20940 at 4687.764 kb on + strand, within HER17_RS20940 at 4687.768 kb on + strand, within HER17_RS20940 at 4687.768 kb on + strand, within HER17_RS20940 at 4687.769 kb on - strand, within HER17_RS20940 at 4687.769 kb on - strand, within HER17_RS20940 at 4687.786 kb on + strand, within HER17_RS20940 at 4687.796 kb on - strand, within HER17_RS20940 at 4687.796 kb on - strand, within HER17_RS20940 at 4687.796 kb on - strand, within HER17_RS20940 at 4687.796 kb on - strand, within HER17_RS20940 at 4687.803 kb on + strand, within HER17_RS20940 at 4687.803 kb on + strand, within HER17_RS20940 at 4687.803 kb on + strand, within HER17_RS20940 at 4687.803 kb on + strand, within HER17_RS20940 at 4687.825 kb on + strand, within HER17_RS20940 at 4687.854 kb on - strand, within HER17_RS20940 at 4687.925 kb on - strand, within HER17_RS20940 at 4688.019 kb on + strand, within HER17_RS20940 at 4688.036 kb on + strand, within HER17_RS20940 at 4688.071 kb on + strand, within HER17_RS20940 at 4688.072 kb on - strand, within HER17_RS20940 at 4688.072 kb on - strand, within HER17_RS20940 at 4688.072 kb on - strand, within HER17_RS20940 at 4688.102 kb on - strand, within HER17_RS20940 at 4688.109 kb on + strand, within HER17_RS20940 at 4688.109 kb on + strand, within HER17_RS20940 at 4688.110 kb on - strand, within HER17_RS20940 at 4688.140 kb on - strand, within HER17_RS20940 at 4688.164 kb on + strand, within HER17_RS20940 at 4688.218 kb on + strand at 4688.218 kb on + strand at 4688.374 kb on + strand, within HER17_RS20945 at 4688.378 kb on - strand, within HER17_RS20945 at 4688.455 kb on + strand, within HER17_RS20945 at 4688.455 kb on + strand, within HER17_RS20945 at 4688.456 kb on - strand, within HER17_RS20945 at 4688.456 kb on - strand, within HER17_RS20945 at 4688.458 kb on + strand, within HER17_RS20945 at 4688.458 kb on + strand, within HER17_RS20945 at 4688.458 kb on + strand, within HER17_RS20945 at 4688.458 kb on + strand, within HER17_RS20945 at 4688.458 kb on + strand, within HER17_RS20945 at 4688.459 kb on - strand, within HER17_RS20945 at 4688.459 kb on - strand, within HER17_RS20945 at 4688.459 kb on - strand, within HER17_RS20945 at 4688.462 kb on - strand, within HER17_RS20945 at 4688.462 kb on - strand, within HER17_RS20945 at 4688.523 kb on - strand, within HER17_RS20945 at 4688.639 kb on + strand, within HER17_RS20945 at 4688.673 kb on - strand, within HER17_RS20945 at 4688.673 kb on - strand, within HER17_RS20945 at 4688.673 kb on - strand, within HER17_RS20945 at 4688.675 kb on + strand, within HER17_RS20945 at 4688.676 kb on - strand, within HER17_RS20945 at 4688.676 kb on - strand, within HER17_RS20945 at 4688.707 kb on + strand, within HER17_RS20945 at 4688.779 kb on + strand, within HER17_RS20945 at 4688.779 kb on + strand, within HER17_RS20945 at 4688.779 kb on + strand, within HER17_RS20945 at 4688.780 kb on - strand, within HER17_RS20945 at 4688.780 kb on - strand, within HER17_RS20945 at 4688.817 kb on + strand at 4688.846 kb on + strand at 4688.847 kb on - strand at 4688.891 kb on - strand at 4688.921 kb on + strand at 4688.922 kb on - strand at 4688.942 kb on - strand at 4688.942 kb on - strand at 4688.945 kb on - strand at 4688.948 kb on - strand at 4688.975 kb on + strand at 4688.978 kb on + strand at 4688.979 kb on - strand at 4688.979 kb on - strand at 4688.979 kb on - strand at 4689.018 kb on + strand, within HER17_RS20950 at 4689.018 kb on + strand, within HER17_RS20950 at 4689.018 kb on + strand, within HER17_RS20950 at 4689.019 kb on - strand, within HER17_RS20950 at 4689.019 kb on - strand, within HER17_RS20950 at 4689.220 kb on - strand, within HER17_RS20950 at 4689.249 kb on + strand, within HER17_RS20950 at 4689.250 kb on - strand, within HER17_RS20950 at 4689.302 kb on - strand, within HER17_RS20950 at 4689.330 kb on - strand at 4689.407 kb on + strand at 4689.407 kb on + strand at 4689.407 kb on + strand at 4689.408 kb on - strand at 4689.408 kb on - strand at 4689.463 kb on + strand, within HER17_RS20955 at 4689.463 kb on + strand, within HER17_RS20955 at 4689.463 kb on + strand, within HER17_RS20955 at 4689.463 kb on + strand, within HER17_RS20955 at 4689.463 kb on + strand, within HER17_RS20955 at 4689.463 kb on + strand, within HER17_RS20955 at 4689.464 kb on - strand, within HER17_RS20955 at 4689.464 kb on - strand, within HER17_RS20955 at 4689.464 kb on - strand, within HER17_RS20955 at 4689.464 kb on - strand, within HER17_RS20955 at 4689.464 kb on - strand, within HER17_RS20955 at 4689.464 kb on - strand, within HER17_RS20955 at 4689.464 kb on - strand, within HER17_RS20955 at 4689.464 kb on - strand, within HER17_RS20955 at 4689.497 kb on + strand, within HER17_RS20955 at 4689.498 kb on - strand, within HER17_RS20955 at 4689.498 kb on - strand, within HER17_RS20955 at 4689.750 kb on + strand, within HER17_RS20955 at 4689.769 kb on + strand at 4689.770 kb on - strand at 4689.770 kb on - strand at 4689.770 kb on - strand at 4689.777 kb on + strand at 4689.777 kb on + strand at 4689.777 kb on + strand at 4689.777 kb on + strand at 4689.778 kb on - strand at 4689.778 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,687,344 + +0.6 4,687,385 - +0.4 4,687,400 - +0.3 4,687,404 + +0.3 4,687,404 + +0.1 4,687,404 + -0.0 4,687,404 + +0.2 4,687,404 + +1.9 4,687,405 - +1.5 4,687,405 - +0.2 4,687,408 + +0.3 4,687,408 + +1.6 4,687,409 - +1.2 4,687,432 + +0.5 4,687,432 + -0.3 4,687,433 - +0.7 4,687,433 - -0.5 4,687,461 + +0.6 4,687,487 - +0.4 4,687,487 - -0.4 4,687,497 + +0.2 4,687,505 - +1.0 4,687,505 - +0.4 4,687,505 - -0.6 4,687,516 - +0.6 4,687,528 + -0.8 4,687,528 + -0.2 4,687,532 - +0.8 4,687,588 - +0.8 4,687,590 + +1.0 4,687,591 - -0.1 4,687,591 - -0.3 4,687,591 - +0.6 4,687,591 - +0.2 4,687,734 - +1.0 4,687,764 + HER17_RS20940 0.12 -0.3 4,687,764 + HER17_RS20940 0.12 -1.0 4,687,768 + HER17_RS20940 0.13 -1.4 4,687,768 + HER17_RS20940 0.13 +0.3 4,687,769 - HER17_RS20940 0.13 +1.9 4,687,769 - HER17_RS20940 0.13 -0.1 4,687,786 + HER17_RS20940 0.16 +0.3 4,687,796 - HER17_RS20940 0.18 +0.1 4,687,796 - HER17_RS20940 0.18 +0.5 4,687,796 - HER17_RS20940 0.18 +0.1 4,687,796 - HER17_RS20940 0.18 -0.8 4,687,803 + HER17_RS20940 0.19 +0.8 4,687,803 + HER17_RS20940 0.19 -0.6 4,687,803 + HER17_RS20940 0.19 -0.2 4,687,803 + HER17_RS20940 0.19 +0.6 4,687,825 + HER17_RS20940 0.23 -0.5 4,687,854 - HER17_RS20940 0.28 -1.4 4,687,925 - HER17_RS20940 0.41 -0.8 4,688,019 + HER17_RS20940 0.58 -0.3 4,688,036 + HER17_RS20940 0.61 -0.9 4,688,071 + HER17_RS20940 0.67 -1.2 4,688,072 - HER17_RS20940 0.67 -0.2 4,688,072 - HER17_RS20940 0.67 +0.6 4,688,072 - HER17_RS20940 0.67 -0.1 4,688,102 - HER17_RS20940 0.73 +0.4 4,688,109 + HER17_RS20940 0.74 -0.5 4,688,109 + HER17_RS20940 0.74 -0.8 4,688,110 - HER17_RS20940 0.74 -0.2 4,688,140 - HER17_RS20940 0.80 +0.6 4,688,164 + HER17_RS20940 0.84 -1.2 4,688,218 + -0.6 4,688,218 + +0.3 4,688,374 + HER17_RS20945 0.13 +0.3 4,688,378 - HER17_RS20945 0.14 -0.6 4,688,455 + HER17_RS20945 0.28 -0.5 4,688,455 + HER17_RS20945 0.28 +0.6 4,688,456 - HER17_RS20945 0.28 +0.1 4,688,456 - HER17_RS20945 0.28 +0.3 4,688,458 + HER17_RS20945 0.29 -0.6 4,688,458 + HER17_RS20945 0.29 -0.9 4,688,458 + HER17_RS20945 0.29 +0.0 4,688,458 + HER17_RS20945 0.29 +0.3 4,688,458 + HER17_RS20945 0.29 -0.3 4,688,459 - HER17_RS20945 0.29 +0.0 4,688,459 - HER17_RS20945 0.29 -0.4 4,688,459 - HER17_RS20945 0.29 -0.5 4,688,462 - HER17_RS20945 0.29 +1.5 4,688,462 - HER17_RS20945 0.29 -1.3 4,688,523 - HER17_RS20945 0.41 +0.7 4,688,639 + HER17_RS20945 0.62 +0.2 4,688,673 - HER17_RS20945 0.68 +0.1 4,688,673 - HER17_RS20945 0.68 +1.3 4,688,673 - HER17_RS20945 0.68 -0.2 4,688,675 + HER17_RS20945 0.68 -0.4 4,688,676 - HER17_RS20945 0.69 +0.4 4,688,676 - HER17_RS20945 0.69 -1.1 4,688,707 + HER17_RS20945 0.74 -0.8 4,688,779 + HER17_RS20945 0.88 -0.3 4,688,779 + HER17_RS20945 0.88 -0.2 4,688,779 + HER17_RS20945 0.88 +0.4 4,688,780 - HER17_RS20945 0.88 +0.1 4,688,780 - HER17_RS20945 0.88 +0.1 4,688,817 + -0.3 4,688,846 + +0.5 4,688,847 - -0.4 4,688,891 - +0.7 4,688,921 + -0.5 4,688,922 - -0.7 4,688,942 - -0.1 4,688,942 - +1.0 4,688,945 - +0.4 4,688,948 - -0.1 4,688,975 + -0.1 4,688,978 + +0.6 4,688,979 - +0.2 4,688,979 - -0.0 4,688,979 - -0.2 4,689,018 + HER17_RS20950 0.15 +1.2 4,689,018 + HER17_RS20950 0.15 +0.2 4,689,018 + HER17_RS20950 0.15 +0.6 4,689,019 - HER17_RS20950 0.15 +0.1 4,689,019 - HER17_RS20950 0.15 -1.0 4,689,220 - HER17_RS20950 0.67 -0.5 4,689,249 + HER17_RS20950 0.75 +0.2 4,689,250 - HER17_RS20950 0.75 +0.1 4,689,302 - HER17_RS20950 0.88 +0.9 4,689,330 - -0.4 4,689,407 + +0.9 4,689,407 + -0.6 4,689,407 + -0.7 4,689,408 - +0.2 4,689,408 - -0.3 4,689,463 + HER17_RS20955 0.16 -0.2 4,689,463 + HER17_RS20955 0.16 +0.4 4,689,463 + HER17_RS20955 0.16 -0.1 4,689,463 + HER17_RS20955 0.16 +0.7 4,689,463 + HER17_RS20955 0.16 +0.5 4,689,463 + HER17_RS20955 0.16 +0.1 4,689,464 - HER17_RS20955 0.17 -0.0 4,689,464 - HER17_RS20955 0.17 +1.2 4,689,464 - HER17_RS20955 0.17 -0.5 4,689,464 - HER17_RS20955 0.17 -0.2 4,689,464 - HER17_RS20955 0.17 +1.4 4,689,464 - HER17_RS20955 0.17 -0.6 4,689,464 - HER17_RS20955 0.17 -1.1 4,689,464 - HER17_RS20955 0.17 +0.4 4,689,497 + HER17_RS20955 0.24 +0.1 4,689,498 - HER17_RS20955 0.24 -1.3 4,689,498 - HER17_RS20955 0.24 -0.5 4,689,750 + HER17_RS20955 0.80 -1.3 4,689,769 + -1.2 4,689,770 - +0.1 4,689,770 - +0.9 4,689,770 - -0.2 4,689,777 + -0.4 4,689,777 + -0.0 4,689,777 + +0.3 4,689,777 + +0.6 4,689,778 - +0.0 4,689,778 - -0.2
Or see this region's nucleotide sequence