Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS20770

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
4,654,487	-		HER17_RS20765	0.49	+0.1
4,654,487	-		HER17_RS20765	0.49	+0.6
4,654,668	-		HER17_RS20765	0.64	+0.7
4,654,668	-		HER17_RS20765	0.64	+0.9
4,654,706	+		HER17_RS20765	0.68	-0.5
4,654,771	+		HER17_RS20765	0.73	+0.4
4,654,812	-		HER17_RS20765	0.76	-0.9
4,654,939	+		HER17_RS20765	0.87	+0.8
4,654,939	+		HER17_RS20765	0.87	+0.7
4,654,939	+		HER17_RS20765	0.87	-0.2
4,654,939	+		HER17_RS20765	0.87	+0.7
4,654,939	+		HER17_RS20765	0.87	+0.2
4,654,940	-		HER17_RS20765	0.87	+0.8
4,654,940	-		HER17_RS20765	0.87	+0.5
4,654,943	+		HER17_RS20765	0.87	+0.9
4,655,063	+				+1.2
4,655,064	-				-0.7
4,655,064	-				-0.6
4,655,067	-				+0.1
4,655,124	-				-0.0
4,655,236	+				+1.4
4,655,236	+				+0.6
4,655,237	-				+0.0
4,655,237	-				+0.4
4,655,269	+				-0.5
4,655,270	-				+0.8
4,655,272	+				-0.7
4,655,272	+				-0.6
4,655,284	-				-1.5
4,655,323	-				-1.0
4,655,484	-		HER17_RS20770	0.16	-0.8
4,655,487	+		HER17_RS20770	0.16	-1.5
4,655,487	+		HER17_RS20770	0.16	+0.4
4,655,487	+		HER17_RS20770	0.16	-0.0
4,655,492	-		HER17_RS20770	0.17	-0.3
4,655,492	-		HER17_RS20770	0.17	+0.1
4,655,597	+		HER17_RS20770	0.28	+1.8
4,655,598	-		HER17_RS20770	0.28	+0.1
4,655,598	-		HER17_RS20770	0.28	-0.5
4,655,615	+		HER17_RS20770	0.30	+0.8
4,655,616	-		HER17_RS20770	0.30	-0.4
4,655,626	+		HER17_RS20770	0.31	-0.5
4,655,643	-		HER17_RS20770	0.33	-1.7
4,655,672	+		HER17_RS20770	0.36	-1.5
4,655,672	+		HER17_RS20770	0.36	-1.4
4,655,784	-		HER17_RS20770	0.48	-1.3
4,655,911	+		HER17_RS20770	0.62	+0.5
4,655,973	-		HER17_RS20770	0.68	-0.9
4,656,117	-		HER17_RS20770	0.84	+0.4
4,656,117	-		HER17_RS20770	0.84	-1.2
4,656,117	-		HER17_RS20770	0.84	+0.7
4,656,158	+		HER17_RS20770	0.88	-0.7
4,656,159	-		HER17_RS20770	0.88	-0.9
4,656,159	-		HER17_RS20770	0.88	-1.6
4,656,160	+		HER17_RS20770	0.88	+0.1
4,656,160	+		HER17_RS20770	0.88	+0.5
4,656,161	-		HER17_RS20770	0.88	-0.2
4,656,161	-		HER17_RS20770	0.88	+0.5
4,656,161	-		HER17_RS20770	0.88	-1.8
4,656,239	+				+0.8
4,656,239	+				-2.8
4,656,240	-				-1.7
4,656,240	-				+1.3
4,656,241	+				-0.2
4,656,242	-				-0.9
4,656,267	-				-1.6
4,656,284	+				-1.3
4,656,533	-		HER17_RS20775	0.22	-0.3
4,656,544	+		HER17_RS20775	0.23	-1.0
4,656,544	+		HER17_RS20775	0.23	-2.1
4,656,545	-		HER17_RS20775	0.23	-2.0
4,656,650	+		HER17_RS20775	0.32	-1.8
4,656,663	+		HER17_RS20775	0.34	-0.3
4,656,663	+		HER17_RS20775	0.34	-0.7
4,656,694	+		HER17_RS20775	0.36	-0.3
4,656,694	+		HER17_RS20775	0.36	+0.2
4,656,694	+		HER17_RS20775	0.36	-0.0
4,656,695	-		HER17_RS20775	0.37	-1.9
4,656,709	+		HER17_RS20775	0.38	-1.7
4,656,709	+		HER17_RS20775	0.38	+0.2
4,656,771	-		HER17_RS20775	0.43	-0.1
4,656,771	-		HER17_RS20775	0.43	-0.2
4,656,889	+		HER17_RS20775	0.54	-1.9
4,656,938	+		HER17_RS20775	0.59	-0.4
4,656,939	-		HER17_RS20775	0.59	-1.6
4,657,151	-		HER17_RS20775	0.78	-2.0