Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS19300 and HER17_RS19305 are separated by 5 nucleotides HER17_RS19305 and HER17_RS19310 overlap by 4 nucleotides HER17_RS19310 and HER17_RS19315 are separated by 79 nucleotides
HER17_RS19300: HER17_RS19300 - HNH endonuclease, at 4,339,550 to 4,340,341
_RS19300
HER17_RS19305: HER17_RS19305 - type II toxin-antitoxin system RelE/ParE family toxin, at 4,340,347 to 4,340,652
_RS19305
HER17_RS19310: HER17_RS19310 - DNA-damage-inducible protein J, at 4,340,649 to 4,340,933
_RS19310
HER17_RS19315: HER17_RS19315 - hypothetical protein, at 4,341,013 to 4,342,356
_RS19315
Position (kb) 4340
4341 Strain fitness (log2 ratio) -1
0
1
2 at 4339.678 kb on + strand, within HER17_RS19300 at 4339.732 kb on + strand, within HER17_RS19300 at 4339.733 kb on - strand, within HER17_RS19300 at 4339.818 kb on + strand, within HER17_RS19300 at 4339.819 kb on - strand, within HER17_RS19300 at 4339.848 kb on + strand, within HER17_RS19300 at 4339.921 kb on + strand, within HER17_RS19300 at 4339.922 kb on - strand, within HER17_RS19300 at 4339.925 kb on + strand, within HER17_RS19300 at 4339.926 kb on - strand, within HER17_RS19300 at 4339.926 kb on - strand, within HER17_RS19300 at 4339.945 kb on + strand, within HER17_RS19300 at 4339.945 kb on + strand, within HER17_RS19300 at 4339.946 kb on - strand, within HER17_RS19300 at 4339.946 kb on - strand, within HER17_RS19300 at 4339.954 kb on - strand, within HER17_RS19300 at 4339.977 kb on + strand, within HER17_RS19300 at 4339.977 kb on + strand, within HER17_RS19300 at 4339.978 kb on - strand, within HER17_RS19300 at 4340.062 kb on + strand, within HER17_RS19300 at 4340.162 kb on - strand, within HER17_RS19300 at 4340.162 kb on - strand, within HER17_RS19300 at 4340.246 kb on + strand, within HER17_RS19300 at 4340.306 kb on + strand at 4340.306 kb on + strand at 4340.307 kb on - strand at 4340.307 kb on - strand at 4340.343 kb on + strand at 4340.343 kb on + strand at 4340.343 kb on + strand at 4340.343 kb on + strand at 4340.343 kb on + strand at 4340.343 kb on + strand at 4340.343 kb on + strand at 4340.343 kb on + strand at 4340.344 kb on - strand at 4340.344 kb on - strand at 4340.344 kb on - strand at 4340.379 kb on + strand, within HER17_RS19305 at 4340.379 kb on + strand, within HER17_RS19305 at 4340.380 kb on - strand, within HER17_RS19305 at 4340.380 kb on - strand, within HER17_RS19305 at 4340.380 kb on - strand, within HER17_RS19305 at 4340.380 kb on - strand, within HER17_RS19305 at 4340.380 kb on - strand, within HER17_RS19305 at 4340.383 kb on + strand, within HER17_RS19305 at 4340.383 kb on + strand, within HER17_RS19305 at 4340.383 kb on + strand, within HER17_RS19305 at 4340.383 kb on + strand, within HER17_RS19305 at 4340.383 kb on + strand, within HER17_RS19305 at 4340.383 kb on + strand, within HER17_RS19305 at 4340.383 kb on + strand, within HER17_RS19305 at 4340.383 kb on + strand, within HER17_RS19305 at 4340.383 kb on + strand, within HER17_RS19305 at 4340.383 kb on + strand, within HER17_RS19305 at 4340.383 kb on + strand, within HER17_RS19305 at 4340.383 kb on + strand, within HER17_RS19305 at 4340.383 kb on + strand, within HER17_RS19305 at 4340.383 kb on + strand, within HER17_RS19305 at 4340.383 kb on + strand, within HER17_RS19305 at 4340.384 kb on - strand, within HER17_RS19305 at 4340.384 kb on - strand, within HER17_RS19305 at 4340.384 kb on - strand, within HER17_RS19305 at 4340.384 kb on - strand, within HER17_RS19305 at 4340.384 kb on - strand, within HER17_RS19305 at 4340.384 kb on - strand, within HER17_RS19305 at 4340.384 kb on - strand, within HER17_RS19305 at 4340.384 kb on - strand, within HER17_RS19305 at 4340.384 kb on - strand, within HER17_RS19305 at 4340.384 kb on - strand, within HER17_RS19305 at 4340.384 kb on - strand, within HER17_RS19305 at 4340.384 kb on - strand, within HER17_RS19305 at 4340.384 kb on - strand, within HER17_RS19305 at 4340.384 kb on - strand, within HER17_RS19305 at 4340.384 kb on - strand, within HER17_RS19305 at 4340.384 kb on - strand, within HER17_RS19305 at 4340.384 kb on - strand, within HER17_RS19305 at 4340.386 kb on + strand, within HER17_RS19305 at 4340.386 kb on + strand, within HER17_RS19305 at 4340.386 kb on + strand, within HER17_RS19305 at 4340.387 kb on - strand, within HER17_RS19305 at 4340.387 kb on - strand, within HER17_RS19305 at 4340.387 kb on - strand, within HER17_RS19305 at 4340.387 kb on - strand, within HER17_RS19305 at 4340.388 kb on + strand, within HER17_RS19305 at 4340.388 kb on + strand, within HER17_RS19305 at 4340.388 kb on + strand, within HER17_RS19305 at 4340.389 kb on - strand, within HER17_RS19305 at 4340.389 kb on - strand, within HER17_RS19305 at 4340.389 kb on - strand, within HER17_RS19305 at 4340.389 kb on - strand, within HER17_RS19305 at 4340.397 kb on + strand, within HER17_RS19305 at 4340.410 kb on + strand, within HER17_RS19305 at 4340.429 kb on + strand, within HER17_RS19305 at 4340.429 kb on + strand, within HER17_RS19305 at 4340.429 kb on + strand, within HER17_RS19305 at 4340.429 kb on + strand, within HER17_RS19305 at 4340.430 kb on - strand, within HER17_RS19305 at 4340.430 kb on - strand, within HER17_RS19305 at 4340.430 kb on - strand, within HER17_RS19305 at 4340.430 kb on - strand, within HER17_RS19305 at 4340.430 kb on - strand, within HER17_RS19305 at 4340.436 kb on + strand, within HER17_RS19305 at 4340.538 kb on + strand, within HER17_RS19305 at 4340.539 kb on - strand, within HER17_RS19305 at 4340.583 kb on + strand, within HER17_RS19305 at 4340.584 kb on - strand, within HER17_RS19305 at 4340.585 kb on + strand, within HER17_RS19305 at 4340.585 kb on + strand, within HER17_RS19305 at 4340.586 kb on - strand, within HER17_RS19305 at 4340.592 kb on - strand, within HER17_RS19305 at 4340.599 kb on + strand, within HER17_RS19305 at 4340.599 kb on + strand, within HER17_RS19305 at 4340.599 kb on + strand, within HER17_RS19305 at 4340.600 kb on - strand, within HER17_RS19305 at 4340.600 kb on - strand, within HER17_RS19305 at 4340.643 kb on + strand at 4340.643 kb on + strand at 4340.644 kb on - strand at 4340.644 kb on - strand at 4340.644 kb on - strand at 4340.644 kb on - strand at 4340.647 kb on + strand at 4341.018 kb on + strand at 4341.018 kb on + strand at 4341.019 kb on - strand at 4341.019 kb on - strand at 4341.019 kb on - strand at 4341.020 kb on + strand at 4341.020 kb on + strand at 4341.021 kb on - strand at 4341.021 kb on - strand at 4341.039 kb on - strand at 4341.039 kb on - strand at 4341.039 kb on - strand at 4341.039 kb on - strand at 4341.058 kb on - strand at 4341.108 kb on + strand at 4341.143 kb on - strand at 4341.170 kb on - strand, within HER17_RS19315 at 4341.177 kb on + strand, within HER17_RS19315 at 4341.177 kb on + strand, within HER17_RS19315 at 4341.178 kb on - strand, within HER17_RS19315 at 4341.178 kb on - strand, within HER17_RS19315 at 4341.189 kb on + strand, within HER17_RS19315 at 4341.190 kb on - strand, within HER17_RS19315 at 4341.226 kb on - strand, within HER17_RS19315 at 4341.226 kb on - strand, within HER17_RS19315 at 4341.248 kb on + strand, within HER17_RS19315 at 4341.249 kb on - strand, within HER17_RS19315 at 4341.249 kb on - strand, within HER17_RS19315 at 4341.249 kb on - strand, within HER17_RS19315 at 4341.251 kb on + strand, within HER17_RS19315 at 4341.252 kb on - strand, within HER17_RS19315 at 4341.361 kb on - strand, within HER17_RS19315 at 4341.380 kb on - strand, within HER17_RS19315 at 4341.380 kb on - strand, within HER17_RS19315 at 4341.426 kb on + strand, within HER17_RS19315 at 4341.426 kb on + strand, within HER17_RS19315 at 4341.426 kb on + strand, within HER17_RS19315 at 4341.427 kb on - strand, within HER17_RS19315 at 4341.447 kb on - strand, within HER17_RS19315 at 4341.449 kb on + strand, within HER17_RS19315 at 4341.462 kb on - strand, within HER17_RS19315 at 4341.499 kb on - strand, within HER17_RS19315 at 4341.521 kb on - strand, within HER17_RS19315 at 4341.581 kb on + strand, within HER17_RS19315 at 4341.582 kb on - strand, within HER17_RS19315 at 4341.616 kb on + strand, within HER17_RS19315 at 4341.703 kb on + strand, within HER17_RS19315 at 4341.703 kb on + strand, within HER17_RS19315 at 4341.710 kb on + strand, within HER17_RS19315 at 4341.710 kb on + strand, within HER17_RS19315 at 4341.711 kb on - strand, within HER17_RS19315 at 4341.797 kb on - strand, within HER17_RS19315 at 4341.845 kb on - strand, within HER17_RS19315
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,339,678 + HER17_RS19300 0.16 +0.1 4,339,732 + HER17_RS19300 0.23 +0.4 4,339,733 - HER17_RS19300 0.23 -0.6 4,339,818 + HER17_RS19300 0.34 -0.4 4,339,819 - HER17_RS19300 0.34 +0.6 4,339,848 + HER17_RS19300 0.38 -0.5 4,339,921 + HER17_RS19300 0.47 +0.3 4,339,922 - HER17_RS19300 0.47 -0.8 4,339,925 + HER17_RS19300 0.47 -0.6 4,339,926 - HER17_RS19300 0.47 -0.2 4,339,926 - HER17_RS19300 0.47 -0.6 4,339,945 + HER17_RS19300 0.50 -0.5 4,339,945 + HER17_RS19300 0.50 +0.3 4,339,946 - HER17_RS19300 0.50 +0.0 4,339,946 - HER17_RS19300 0.50 +0.8 4,339,954 - HER17_RS19300 0.51 -0.1 4,339,977 + HER17_RS19300 0.54 +0.0 4,339,977 + HER17_RS19300 0.54 -0.6 4,339,978 - HER17_RS19300 0.54 +0.1 4,340,062 + HER17_RS19300 0.65 +0.6 4,340,162 - HER17_RS19300 0.77 -0.5 4,340,162 - HER17_RS19300 0.77 +0.2 4,340,246 + HER17_RS19300 0.88 -1.5 4,340,306 + -0.1 4,340,306 + -0.7 4,340,307 - +0.6 4,340,307 - -0.2 4,340,343 + +0.1 4,340,343 + +0.4 4,340,343 + -0.1 4,340,343 + -1.4 4,340,343 + +0.8 4,340,343 + -0.3 4,340,343 + -0.9 4,340,343 + +0.5 4,340,344 - -0.7 4,340,344 - -0.0 4,340,344 - -0.9 4,340,379 + HER17_RS19305 0.10 -0.8 4,340,379 + HER17_RS19305 0.10 +0.0 4,340,380 - HER17_RS19305 0.11 +1.1 4,340,380 - HER17_RS19305 0.11 -0.5 4,340,380 - HER17_RS19305 0.11 +0.1 4,340,380 - HER17_RS19305 0.11 +0.1 4,340,380 - HER17_RS19305 0.11 +0.5 4,340,383 + HER17_RS19305 0.12 -0.1 4,340,383 + HER17_RS19305 0.12 +0.6 4,340,383 + HER17_RS19305 0.12 +0.4 4,340,383 + HER17_RS19305 0.12 -1.1 4,340,383 + HER17_RS19305 0.12 +0.7 4,340,383 + HER17_RS19305 0.12 +0.5 4,340,383 + HER17_RS19305 0.12 +0.7 4,340,383 + HER17_RS19305 0.12 +0.4 4,340,383 + HER17_RS19305 0.12 -1.1 4,340,383 + HER17_RS19305 0.12 -0.4 4,340,383 + HER17_RS19305 0.12 -0.5 4,340,383 + HER17_RS19305 0.12 +0.0 4,340,383 + HER17_RS19305 0.12 -0.2 4,340,383 + HER17_RS19305 0.12 -0.0 4,340,383 + HER17_RS19305 0.12 -1.5 4,340,384 - HER17_RS19305 0.12 -0.2 4,340,384 - HER17_RS19305 0.12 +0.0 4,340,384 - HER17_RS19305 0.12 +0.0 4,340,384 - HER17_RS19305 0.12 -0.9 4,340,384 - HER17_RS19305 0.12 -0.3 4,340,384 - HER17_RS19305 0.12 -0.4 4,340,384 - HER17_RS19305 0.12 +0.4 4,340,384 - HER17_RS19305 0.12 -1.0 4,340,384 - HER17_RS19305 0.12 +0.9 4,340,384 - HER17_RS19305 0.12 +0.1 4,340,384 - HER17_RS19305 0.12 +0.6 4,340,384 - HER17_RS19305 0.12 +0.4 4,340,384 - HER17_RS19305 0.12 +0.4 4,340,384 - HER17_RS19305 0.12 +0.2 4,340,384 - HER17_RS19305 0.12 -0.7 4,340,384 - HER17_RS19305 0.12 -0.2 4,340,384 - HER17_RS19305 0.12 -0.1 4,340,386 + HER17_RS19305 0.13 -1.0 4,340,386 + HER17_RS19305 0.13 -0.1 4,340,386 + HER17_RS19305 0.13 -0.4 4,340,387 - HER17_RS19305 0.13 +0.6 4,340,387 - HER17_RS19305 0.13 +0.1 4,340,387 - HER17_RS19305 0.13 -0.1 4,340,387 - HER17_RS19305 0.13 +0.5 4,340,388 + HER17_RS19305 0.13 +0.2 4,340,388 + HER17_RS19305 0.13 +0.9 4,340,388 + HER17_RS19305 0.13 -0.8 4,340,389 - HER17_RS19305 0.14 +0.4 4,340,389 - HER17_RS19305 0.14 -0.2 4,340,389 - HER17_RS19305 0.14 -1.6 4,340,389 - HER17_RS19305 0.14 +0.4 4,340,397 + HER17_RS19305 0.16 +0.1 4,340,410 + HER17_RS19305 0.21 -0.1 4,340,429 + HER17_RS19305 0.27 +0.1 4,340,429 + HER17_RS19305 0.27 +0.2 4,340,429 + HER17_RS19305 0.27 +0.6 4,340,429 + HER17_RS19305 0.27 +0.2 4,340,430 - HER17_RS19305 0.27 +0.5 4,340,430 - HER17_RS19305 0.27 +0.3 4,340,430 - HER17_RS19305 0.27 -0.2 4,340,430 - HER17_RS19305 0.27 -0.1 4,340,430 - HER17_RS19305 0.27 -0.1 4,340,436 + HER17_RS19305 0.29 -0.7 4,340,538 + HER17_RS19305 0.62 +0.8 4,340,539 - HER17_RS19305 0.63 -0.2 4,340,583 + HER17_RS19305 0.77 -0.3 4,340,584 - HER17_RS19305 0.77 +1.2 4,340,585 + HER17_RS19305 0.78 +2.2 4,340,585 + HER17_RS19305 0.78 -0.8 4,340,586 - HER17_RS19305 0.78 +0.3 4,340,592 - HER17_RS19305 0.80 +0.5 4,340,599 + HER17_RS19305 0.82 +1.1 4,340,599 + HER17_RS19305 0.82 -1.6 4,340,599 + HER17_RS19305 0.82 -1.1 4,340,600 - HER17_RS19305 0.83 -1.0 4,340,600 - HER17_RS19305 0.83 +0.5 4,340,643 + +0.6 4,340,643 + -0.3 4,340,644 - -0.7 4,340,644 - +0.0 4,340,644 - -0.4 4,340,644 - +0.2 4,340,647 + -1.4 4,341,018 + -0.2 4,341,018 + -0.5 4,341,019 - -0.4 4,341,019 - +0.9 4,341,019 - +0.8 4,341,020 + +0.6 4,341,020 + +0.5 4,341,021 - +0.4 4,341,021 - -0.6 4,341,039 - -0.0 4,341,039 - +0.5 4,341,039 - -0.6 4,341,039 - +1.3 4,341,058 - -0.0 4,341,108 + -1.0 4,341,143 - +0.3 4,341,170 - HER17_RS19315 0.12 -0.4 4,341,177 + HER17_RS19315 0.12 +0.1 4,341,177 + HER17_RS19315 0.12 -0.1 4,341,178 - HER17_RS19315 0.12 +0.2 4,341,178 - HER17_RS19315 0.12 +0.0 4,341,189 + HER17_RS19315 0.13 -0.1 4,341,190 - HER17_RS19315 0.13 +0.3 4,341,226 - HER17_RS19315 0.16 -0.6 4,341,226 - HER17_RS19315 0.16 -0.3 4,341,248 + HER17_RS19315 0.17 +0.5 4,341,249 - HER17_RS19315 0.18 -0.9 4,341,249 - HER17_RS19315 0.18 +0.0 4,341,249 - HER17_RS19315 0.18 -0.4 4,341,251 + HER17_RS19315 0.18 -0.9 4,341,252 - HER17_RS19315 0.18 +0.1 4,341,361 - HER17_RS19315 0.26 -0.3 4,341,380 - HER17_RS19315 0.27 +1.0 4,341,380 - HER17_RS19315 0.27 -0.6 4,341,426 + HER17_RS19315 0.31 -0.4 4,341,426 + HER17_RS19315 0.31 +0.6 4,341,426 + HER17_RS19315 0.31 +0.2 4,341,427 - HER17_RS19315 0.31 +0.2 4,341,447 - HER17_RS19315 0.32 -0.3 4,341,449 + HER17_RS19315 0.32 +0.3 4,341,462 - HER17_RS19315 0.33 +0.3 4,341,499 - HER17_RS19315 0.36 +0.8 4,341,521 - HER17_RS19315 0.38 -0.0 4,341,581 + HER17_RS19315 0.42 -0.0 4,341,582 - HER17_RS19315 0.42 +1.0 4,341,616 + HER17_RS19315 0.45 -0.7 4,341,703 + HER17_RS19315 0.51 -0.4 4,341,703 + HER17_RS19315 0.51 +2.6 4,341,710 + HER17_RS19315 0.52 -0.2 4,341,710 + HER17_RS19315 0.52 +0.1 4,341,711 - HER17_RS19315 0.52 -1.4 4,341,797 - HER17_RS19315 0.58 -1.6 4,341,845 - HER17_RS19315 0.62 +0.7
Or see this region's nucleotide sequence