Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS18160

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
4,088,977	+				-0.8
4,088,977	+				+0.6
4,088,978	-				-0.1
4,089,022	+				+0.4
4,089,022	+				-1.6
4,089,022	+				-0.2
4,089,023	-				+0.3
4,089,023	-				-1.1
4,089,023	-				+0.5
4,089,023	-				+0.4
4,089,058	-				+0.4
4,089,128	+		HER17_RS18155	0.20	+0.2
4,089,129	-		HER17_RS18155	0.21	+0.5
4,089,166	+		HER17_RS18155	0.28	-1.4
4,089,166	+		HER17_RS18155	0.28	+0.6
4,089,166	+		HER17_RS18155	0.28	+0.0
4,089,166	+		HER17_RS18155	0.28	+0.8
4,089,167	-		HER17_RS18155	0.28	-0.2
4,089,167	-		HER17_RS18155	0.28	-1.0
4,089,167	-		HER17_RS18155	0.28	-0.0
4,089,167	-		HER17_RS18155	0.28	-0.4
4,089,174	+		HER17_RS18155	0.29	-0.2
4,089,175	-		HER17_RS18155	0.29	+0.6
4,089,221	+		HER17_RS18155	0.38	+0.1
4,089,222	-		HER17_RS18155	0.38	+0.3
4,089,222	-		HER17_RS18155	0.38	+1.1
4,089,335	+		HER17_RS18155	0.60	+0.9
4,089,462	+		HER17_RS18155	0.84	+1.1
4,089,491	+		HER17_RS18155	0.90	-0.6
4,089,492	-		HER17_RS18155	0.90	+0.5
4,089,492	-		HER17_RS18155	0.90	+0.5
4,089,495	+				+0.7
4,089,495	+				+0.6
4,089,496	-				-1.2
4,089,496	-				-0.7
4,089,499	-				+0.1
4,089,531	+				-1.1
4,089,551	+				+0.2
4,089,551	+				-1.4
4,089,582	+				+0.2
4,089,627	+				-0.9
4,089,627	+				-0.0
4,089,627	+				+1.1
4,089,628	-				-0.0
4,089,628	-				-0.3
4,089,628	-				+0.1
4,089,628	-				-0.1
4,089,628	-				+0.5
4,089,628	-				+0.1
4,089,635	+				+0.0
4,089,636	-				+0.0
4,089,656	+				-0.4
4,089,657	-				+0.4
4,089,690	-				-0.9
4,089,708	-				+0.0
4,089,737	+				-0.2
4,089,870	-				-1.1
4,089,887	-				+0.2
4,089,902	-				-0.5
4,089,974	+				-0.4
4,089,974	+				+0.2
4,089,974	+				-0.0
4,089,975	-				+0.2
4,089,985	-				+0.2
4,090,041	+		HER17_RS18160	0.14	-0.7
4,090,041	+		HER17_RS18160	0.14	-0.5
4,090,059	-		HER17_RS18160	0.16	+0.4
4,090,078	+		HER17_RS18160	0.18	+0.4
4,090,099	+		HER17_RS18160	0.20	+0.9
4,090,099	+		HER17_RS18160	0.20	+0.2
4,090,099	+		HER17_RS18160	0.20	+0.2
4,090,099	+		HER17_RS18160	0.20	+0.1
4,090,099	+		HER17_RS18160	0.20	-0.7
4,090,100	-		HER17_RS18160	0.20	+0.8
4,090,100	-		HER17_RS18160	0.20	-0.8
4,090,100	-		HER17_RS18160	0.20	-0.1
4,090,286	+		HER17_RS18160	0.39	+0.0
4,090,287	-		HER17_RS18160	0.39	+0.6
4,090,317	+		HER17_RS18160	0.42	+0.5
4,090,317	+		HER17_RS18160	0.42	+0.3
4,090,317	+		HER17_RS18160	0.42	+0.5
4,090,318	-		HER17_RS18160	0.42	-1.3
4,090,408	+		HER17_RS18160	0.51	+0.1
4,090,409	-		HER17_RS18160	0.51	-0.4
4,090,409	-		HER17_RS18160	0.51	-0.1
4,090,409	-		HER17_RS18160	0.51	-0.6
4,090,409	-		HER17_RS18160	0.51	+1.1
4,090,409	-		HER17_RS18160	0.51	-0.3
4,090,409	-		HER17_RS18160	0.51	+0.4
4,090,430	+		HER17_RS18160	0.53	-0.3
4,090,430	+		HER17_RS18160	0.53	-0.7
4,090,430	+		HER17_RS18160	0.53	-0.0
4,090,443	-		HER17_RS18160	0.54	-0.1
4,090,466	-		HER17_RS18160	0.57	-0.1
4,090,497	+		HER17_RS18160	0.60	+0.3
4,090,497	+		HER17_RS18160	0.60	-0.8
4,090,498	-		HER17_RS18160	0.60	-0.6
4,090,498	-		HER17_RS18160	0.60	+0.1
4,090,498	-		HER17_RS18160	0.60	+0.6
4,090,543	+		HER17_RS18160	0.64	+0.9
4,090,607	+		HER17_RS18160	0.71	-0.6
4,090,607	+		HER17_RS18160	0.71	-0.6
4,090,607	+		HER17_RS18160	0.71	-0.1
4,090,608	-		HER17_RS18160	0.71	-1.0
4,090,608	-		HER17_RS18160	0.71	+0.6
4,090,608	-		HER17_RS18160	0.71	-0.1
4,090,612	-		HER17_RS18160	0.71	+0.9
4,090,628	+		HER17_RS18160	0.73	+0.2
4,090,696	+		HER17_RS18160	0.80	+0.4
4,090,697	-		HER17_RS18160	0.80	-0.3
4,090,714	-		HER17_RS18160	0.82	-0.7
4,090,739	+		HER17_RS18160	0.84	+1.4
4,090,740	-		HER17_RS18160	0.84	+0.2
4,090,753	+		HER17_RS18160	0.85	-0.9
4,090,878	-				+0.2
4,090,885	+				-0.1
4,090,915	+				-0.7
4,090,915	+				-0.1
4,090,915	+				+0.6
4,090,915	+				+0.3
4,090,916	-				-0.3
4,090,936	+				-0.1
4,090,940	-				+0.0
4,090,940	-				+0.4
4,090,940	-				+0.2
4,090,987	-				+0.8
4,090,987	-				-0.1
4,091,006	-		HER17_RS18165	0.11	+0.3
4,091,006	-		HER17_RS18165	0.11	-2.2
4,091,124	-		HER17_RS18165	0.24	+1.2
4,091,124	-		HER17_RS18165	0.24	-0.7
4,091,124	-		HER17_RS18165	0.24	-0.7
4,091,151	-		HER17_RS18165	0.28	+0.9
4,091,158	+		HER17_RS18165	0.28	+0.6
4,091,158	+		HER17_RS18165	0.28	+0.5
4,091,159	-		HER17_RS18165	0.28	+0.1
4,091,208	+		HER17_RS18165	0.34	-0.4
4,091,208	+		HER17_RS18165	0.34	+0.0
4,091,208	+		HER17_RS18165	0.34	+0.4
4,091,263	+		HER17_RS18165	0.40	+0.0
4,091,264	-		HER17_RS18165	0.40	+0.4
4,091,273	-		HER17_RS18165	0.41	-0.3
4,091,273	-		HER17_RS18165	0.41	-0.3
4,091,292	+		HER17_RS18165	0.44	-0.5
4,091,293	-		HER17_RS18165	0.44	+0.4
4,091,423	+		HER17_RS18165	0.58	-0.1
4,091,424	-		HER17_RS18165	0.59	+0.2
4,091,435	-		HER17_RS18165	0.60	+1.3
4,091,435	-		HER17_RS18165	0.60	+0.4
4,091,585	-		HER17_RS18165	0.77	+0.1
4,091,590	+		HER17_RS18165	0.77	-0.2
4,091,590	+		HER17_RS18165	0.77	+0.1
4,091,591	-		HER17_RS18165	0.78	+0.7
4,091,718	-				-0.1
4,091,843	-				-0.0
4,091,843	-				-0.2
4,091,843	-				+1.1
4,091,848	+				+0.4
4,091,849	-				-0.6
4,091,867	+				+0.2
4,091,867	+				+0.2
4,091,867	+				+0.1
4,091,867	+				+0.1
4,091,868	-				+0.5