Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS17400

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,923,775	+		HER17_RS17395	0.15	+1.8
3,923,775	+		HER17_RS17395	0.15	-0.6
3,923,776	-		HER17_RS17395	0.16	+0.3
3,923,784	+		HER17_RS17395	0.16	-1.0
3,923,785	-		HER17_RS17395	0.16	-0.1
3,923,856	-		HER17_RS17395	0.22	+0.1
3,923,891	+		HER17_RS17395	0.25	-0.1
3,923,891	+		HER17_RS17395	0.25	+0.0
3,923,985	-		HER17_RS17395	0.33	+1.0
3,924,056	-		HER17_RS17395	0.40	-0.5
3,924,066	+		HER17_RS17395	0.40	-0.1
3,924,066	+		HER17_RS17395	0.40	-0.9
3,924,066	+		HER17_RS17395	0.40	+0.4
3,924,066	+		HER17_RS17395	0.40	+0.0
3,924,066	+		HER17_RS17395	0.40	-0.4
3,924,067	-		HER17_RS17395	0.40	+0.1
3,924,067	-		HER17_RS17395	0.40	-0.1
3,924,067	-		HER17_RS17395	0.40	+0.4
3,924,067	-		HER17_RS17395	0.40	-1.4
3,924,067	-		HER17_RS17395	0.40	-0.0
3,924,067	-		HER17_RS17395	0.40	-0.5
3,924,106	+		HER17_RS17395	0.44	-0.5
3,924,107	-		HER17_RS17395	0.44	-0.1
3,924,107	-		HER17_RS17395	0.44	-0.1
3,924,146	-		HER17_RS17395	0.47	-0.4
3,924,173	+		HER17_RS17395	0.50	+0.2
3,924,174	-		HER17_RS17395	0.50	-0.2
3,924,185	-		HER17_RS17395	0.51	-0.1
3,924,185	-		HER17_RS17395	0.51	+0.5
3,924,252	+		HER17_RS17395	0.56	+0.4
3,924,253	-		HER17_RS17395	0.56	+0.5
3,924,275	+		HER17_RS17395	0.58	-0.5
3,924,275	+		HER17_RS17395	0.58	-1.7
3,924,275	+		HER17_RS17395	0.58	+0.2
3,924,276	-		HER17_RS17395	0.58	+0.7
3,924,276	-		HER17_RS17395	0.58	-0.1
3,924,276	-		HER17_RS17395	0.58	-0.4
3,924,276	-		HER17_RS17395	0.58	-0.3
3,924,276	-		HER17_RS17395	0.58	+0.1
3,924,291	+		HER17_RS17395	0.60	-1.0
3,924,291	+		HER17_RS17395	0.60	+0.1
3,924,292	-		HER17_RS17395	0.60	+0.7
3,924,292	-		HER17_RS17395	0.60	+1.0
3,924,295	+		HER17_RS17395	0.60	+0.1
3,924,296	-		HER17_RS17395	0.60	+0.5
3,924,296	-		HER17_RS17395	0.60	+0.7
3,924,304	+		HER17_RS17395	0.61	+0.4
3,924,305	-		HER17_RS17395	0.61	-0.2
3,924,343	+		HER17_RS17395	0.64	-0.2
3,924,343	+		HER17_RS17395	0.64	+0.2
3,924,343	+		HER17_RS17395	0.64	-0.2
3,924,343	+		HER17_RS17395	0.64	+0.2
3,924,368	+		HER17_RS17395	0.66	-0.0
3,924,369	-		HER17_RS17395	0.66	+1.7
3,924,391	+		HER17_RS17395	0.68	+0.9
3,924,472	+		HER17_RS17395	0.75	-1.3
3,924,500	-		HER17_RS17395	0.78	-0.0
3,924,524	+		HER17_RS17395	0.80	+0.7
3,924,525	-		HER17_RS17395	0.80	-0.1
3,924,625	+		HER17_RS17395	0.88	-0.4
3,924,625	+		HER17_RS17395	0.88	+1.1
3,924,626	-		HER17_RS17395	0.88	+0.2
3,924,626	-		HER17_RS17395	0.88	+0.0
3,924,626	-		HER17_RS17395	0.88	-3.1
3,924,626	-		HER17_RS17395	0.88	-0.8
3,924,668	+				+0.1
3,924,668	+				-0.1
3,924,668	+				+0.2
3,924,668	+				+0.4
3,924,669	-				-0.5
3,924,774	+				+0.3
3,924,775	-				-1.0
3,924,781	+				+0.0
3,924,873	-		HER17_RS17400	0.48	-0.4
3,924,873	-		HER17_RS17400	0.48	-0.2
3,924,873	-		HER17_RS17400	0.48	-0.1
3,924,873	-		HER17_RS17400	0.48	-0.3
3,924,876	+		HER17_RS17400	0.50	+0.1
3,924,876	+		HER17_RS17400	0.50	-0.4
3,924,877	-		HER17_RS17400	0.50	+0.1
3,924,976	+				+0.3
3,924,976	+				-0.7
3,924,977	-				-0.7
3,924,977	-				+0.6
3,924,977	-				+0.2
3,924,977	-				+1.1
3,924,977	-				-0.5
3,924,986	-				-0.5
3,925,029	+				+0.1
3,925,029	+				+0.3
3,925,029	+				-0.4
3,925,029	+				-1.6
3,925,029	+				+0.5
3,925,029	+				+0.7
3,925,029	+				-0.3
3,925,030	-				-0.3
3,925,030	-				-0.3
3,925,030	-				-1.0
3,925,030	-				-0.6
3,925,030	-				-1.8
3,925,030	-				+0.0
3,925,030	-				+0.4
3,925,030	-				-0.8
3,925,030	-				+1.0
3,925,030	-				-0.3
3,925,030	-				-0.8
3,925,030	-				+0.8
3,925,030	-				+1.0
3,925,030	-				+0.5
3,925,030	-				-0.3
3,925,046	-				-0.5
3,925,059	+				+0.0
3,925,059	+				-0.3
3,925,059	+				+0.2
3,925,059	+				+0.6
3,925,059	+				-0.5
3,925,060	-				-0.1
3,925,060	-				-1.4
3,925,060	-				-0.3
3,925,060	-				+0.1
3,925,060	-				+0.3
3,925,063	+				-0.0
3,925,064	-				+0.4
3,925,064	-				-0.1
3,925,064	-				+1.0
3,925,220	+		HER17_RS17405	0.15	+0.5
3,925,220	+		HER17_RS17405	0.15	+0.2
3,925,221	-		HER17_RS17405	0.16	-0.5
3,925,248	-		HER17_RS17405	0.18	-0.5
3,925,440	+		HER17_RS17405	0.33	-0.2
3,925,626	+		HER17_RS17405	0.48	+1.0
3,925,762	+		HER17_RS17405	0.59	+0.2
3,925,763	-		HER17_RS17405	0.59	-0.2
3,925,764	+		HER17_RS17405	0.59	+0.1
3,925,764	+		HER17_RS17405	0.59	-0.1
3,925,764	+		HER17_RS17405	0.59	+0.3
3,925,765	-		HER17_RS17405	0.59	+0.6
3,925,765	-		HER17_RS17405	0.59	-1.3
3,925,765	-		HER17_RS17405	0.59	-0.3
3,925,837	+		HER17_RS17405	0.65	-0.2
3,925,837	+		HER17_RS17405	0.65	-0.7
3,925,838	-		HER17_RS17405	0.65	+0.7
3,925,838	-		HER17_RS17405	0.65	-0.7
3,925,838	-		HER17_RS17405	0.65	-0.5
3,925,838	-		HER17_RS17405	0.65	-0.3
3,925,898	+		HER17_RS17405	0.70	-1.0