Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS16240

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,663,741	+				-0.1
3,663,741	+				+0.2
3,663,742	-				-0.4
3,663,742	-				+0.6
3,663,743	+				+0.3
3,663,743	+				+0.2
3,663,744	-				+1.1
3,663,797	-				-0.4
3,663,808	-				+0.2
3,663,814	-		HER17_RS16230	0.10	-0.1
3,663,903	+		HER17_RS16230	0.26	+0.1
3,663,904	-		HER17_RS16230	0.26	-0.2
3,663,904	-		HER17_RS16230	0.26	-0.4
3,663,992	+		HER17_RS16230	0.42	+0.8
3,663,992	+		HER17_RS16230	0.42	-2.9
3,663,992	+		HER17_RS16230	0.42	+0.6
3,663,993	-		HER17_RS16230	0.43	+0.7
3,663,998	+		HER17_RS16230	0.43	-0.1
3,663,998	+		HER17_RS16230	0.43	-0.1
3,663,998	+		HER17_RS16230	0.43	-1.2
3,663,998	+		HER17_RS16230	0.43	-0.6
3,663,998	+		HER17_RS16230	0.43	-1.8
3,663,998	+		HER17_RS16230	0.43	+0.1
3,663,998	+		HER17_RS16230	0.43	+0.2
3,663,998	+		HER17_RS16230	0.43	-0.7
3,663,998	+		HER17_RS16230	0.43	-0.1
3,663,998	+		HER17_RS16230	0.43	-0.5
3,663,998	+		HER17_RS16230	0.43	+0.7
3,663,999	-		HER17_RS16230	0.44	-0.0
3,663,999	-		HER17_RS16230	0.44	+0.3
3,663,999	-		HER17_RS16230	0.44	+0.2
3,663,999	-		HER17_RS16230	0.44	-0.1
3,663,999	-		HER17_RS16230	0.44	-0.6
3,663,999	-		HER17_RS16230	0.44	+0.3
3,663,999	-		HER17_RS16230	0.44	+1.0
3,663,999	-		HER17_RS16230	0.44	-1.8
3,663,999	-		HER17_RS16230	0.44	-0.2
3,663,999	-		HER17_RS16230	0.44	+0.0
3,663,999	-		HER17_RS16230	0.44	+0.8
3,664,060	+		HER17_RS16230	0.55	+0.3
3,664,060	+		HER17_RS16230	0.55	+0.3
3,664,128	+		HER17_RS16230	0.67	+0.4
3,664,129	-		HER17_RS16230	0.67	-0.6
3,664,129	-		HER17_RS16230	0.67	-0.8
3,664,129	-		HER17_RS16230	0.67	-0.0
3,664,141	-		HER17_RS16230	0.69	+1.3
3,664,304	-				+0.6
3,664,304	-				+0.2
3,664,323	+				+0.9
3,664,327	+				+0.6
3,664,327	+				+0.1
3,664,338	-				-1.2
3,664,368	+				-0.1
3,664,369	-				+0.6
3,664,369	-				+0.2
3,664,388	+				-1.0
3,664,388	+				+0.1
3,664,389	-				+0.0
3,664,400	+				+0.1
3,664,401	-				-0.1
3,664,415	+				-0.8
3,664,436	+				+0.0
3,664,436	+				-0.5
3,664,436	+				-0.6
3,664,436	+				+1.0
3,664,437	-				+2.2
3,664,441	+				-1.0
3,664,441	+				-0.6
3,664,441	+				+0.2
3,664,441	+				+0.1
3,664,441	+				+0.8
3,664,441	+				-0.0
3,664,442	-				+0.0
3,664,442	-				-1.5
3,664,442	-				-0.4
3,664,442	-				-0.3
3,664,456	-				+0.6
3,664,460	-				-1.2
3,664,466	+				-0.5
3,664,466	+				-0.1
3,664,467	-				+0.2
3,664,480	+				-0.4
3,664,480	+				-0.1
3,664,480	+				+0.5
3,664,481	-				-0.4
3,664,501	+				-0.0
3,664,501	+				+0.3
3,664,501	+				-0.4
3,664,501	+				+0.5
3,664,502	-				-0.1
3,664,518	+				+0.2
3,664,518	+				-0.4
3,664,518	+				-0.1
3,664,518	+				-0.5
3,664,519	-				-0.4
3,664,519	-				-0.7
3,664,519	-				-1.0
3,664,531	-				+0.3
3,664,548	+				-0.4
3,664,549	-				+0.5
3,664,550	+				+0.6
3,664,550	+				-0.1
3,664,550	+				+0.6
3,664,550	+				-0.2
3,664,550	+				+0.1
3,664,550	+				+0.5
3,664,550	+				-0.6
3,664,551	-				+1.1
3,664,551	-				-0.0
3,664,551	-				+0.9
3,664,571	+				+0.2
3,664,571	+				+0.1
3,664,571	+				-0.0
3,664,574	+		HER17_RS16235	0.11	+0.2
3,664,575	-		HER17_RS16235	0.11	-0.2
3,664,575	-		HER17_RS16235	0.11	-0.2
3,664,583	+		HER17_RS16235	0.15	-1.4
3,664,586	-		HER17_RS16235	0.17	-1.3
3,664,615	+		HER17_RS16235	0.31	+0.1
3,664,615	+		HER17_RS16235	0.31	-0.8
3,664,616	-		HER17_RS16235	0.32	-0.0
3,664,616	-		HER17_RS16235	0.32	+0.1
3,664,617	+		HER17_RS16235	0.32	+0.6
3,664,617	+		HER17_RS16235	0.32	-0.3
3,664,617	+		HER17_RS16235	0.32	+0.6
3,664,617	+		HER17_RS16235	0.32	+0.7
3,664,618	-		HER17_RS16235	0.33	-0.4
3,664,618	-		HER17_RS16235	0.33	+1.0
3,664,618	-		HER17_RS16235	0.33	-0.8
3,664,618	-		HER17_RS16235	0.33	-0.0
3,664,618	-		HER17_RS16235	0.33	-0.7
3,664,618	-		HER17_RS16235	0.33	-0.3
3,664,644	-		HER17_RS16235	0.46	-0.3
3,664,725	-		HER17_RS16235	0.86	-0.1
3,664,739	-				-0.5
3,664,750	+				+0.8
3,664,757	+				-1.2
3,664,781	+		HER17_RS16240	0.16	+0.6
3,664,833	+		HER17_RS16240	0.36	-0.2
3,664,870	+		HER17_RS16240	0.50	+0.6
3,664,870	+		HER17_RS16240	0.50	+0.0
3,664,870	+		HER17_RS16240	0.50	-0.3
3,664,871	-		HER17_RS16240	0.51	+1.0
3,664,882	+		HER17_RS16240	0.55	-1.4
3,664,883	-		HER17_RS16240	0.55	+0.0
3,664,883	-		HER17_RS16240	0.55	+0.4
3,664,895	+		HER17_RS16240	0.60	+0.3
3,664,895	+		HER17_RS16240	0.60	-1.0