Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS15330

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,433,726	+		HER17_RS15325	0.70	+0.2
3,433,726	+		HER17_RS15325	0.70	+0.1
3,433,726	+		HER17_RS15325	0.70	-0.2
3,433,727	-		HER17_RS15325	0.70	+0.1
3,433,729	+		HER17_RS15325	0.70	+0.6
3,433,729	+		HER17_RS15325	0.70	-0.2
3,433,729	+		HER17_RS15325	0.70	+0.4
3,433,729	+		HER17_RS15325	0.70	+1.9
3,433,729	+		HER17_RS15325	0.70	-0.3
3,433,730	-		HER17_RS15325	0.70	-0.7
3,433,730	-		HER17_RS15325	0.70	+0.5
3,433,730	-		HER17_RS15325	0.70	+0.6
3,433,730	-		HER17_RS15325	0.70	-0.3
3,433,730	-		HER17_RS15325	0.70	+0.3
3,433,731	+		HER17_RS15325	0.70	+0.7
3,433,731	+		HER17_RS15325	0.70	+0.1
3,433,731	+		HER17_RS15325	0.70	+0.8
3,433,731	+		HER17_RS15325	0.70	-0.2
3,433,732	-		HER17_RS15325	0.70	+0.3
3,433,732	-		HER17_RS15325	0.70	+0.0
3,433,732	-		HER17_RS15325	0.70	-0.3
3,433,832	+		HER17_RS15325	0.76	+0.5
3,433,833	-		HER17_RS15325	0.76	+0.5
3,433,833	-		HER17_RS15325	0.76	-0.6
3,433,843	-		HER17_RS15325	0.77	-0.6
3,433,851	+		HER17_RS15325	0.77	+0.1
3,433,851	+		HER17_RS15325	0.77	-0.7
3,433,852	-		HER17_RS15325	0.77	-0.4
3,433,914	+		HER17_RS15325	0.81	+0.1
3,433,915	-		HER17_RS15325	0.81	+1.3
3,433,915	-		HER17_RS15325	0.81	-0.1
3,433,915	-		HER17_RS15325	0.81	-0.6
3,433,915	-		HER17_RS15325	0.81	+0.4
3,433,921	+		HER17_RS15325	0.82	-0.2
3,433,921	+		HER17_RS15325	0.82	-0.2
3,433,921	+		HER17_RS15325	0.82	-0.5
3,433,922	-		HER17_RS15325	0.82	+1.4
3,433,923	+		HER17_RS15325	0.82	-0.7
3,433,924	-		HER17_RS15325	0.82	+0.2
3,433,924	-		HER17_RS15325	0.82	+0.3
3,433,924	-		HER17_RS15325	0.82	-0.7
3,433,927	+		HER17_RS15325	0.82	+0.1
3,433,928	-		HER17_RS15325	0.82	+1.1
3,433,928	-		HER17_RS15325	0.82	-0.3
3,434,020	+		HER17_RS15325	0.88	-0.1
3,434,020	+		HER17_RS15325	0.88	+0.1
3,434,020	+		HER17_RS15325	0.88	-0.8
3,434,020	+		HER17_RS15325	0.88	+0.0
3,434,021	-		HER17_RS15325	0.88	-0.3
3,434,021	-		HER17_RS15325	0.88	+0.2
3,434,021	-		HER17_RS15325	0.88	+0.5
3,434,021	-		HER17_RS15325	0.88	-0.2
3,434,078	+				-0.0
3,434,079	-				-0.7
3,434,213	-				+0.0
3,434,259	-				+0.2
3,434,262	+				-0.1
3,434,262	+				-0.8
3,434,263	-				+0.5
3,434,263	-				-0.6
3,434,281	+				-0.4
3,434,282	-				+0.5
3,434,345	+				-0.4
3,434,350	+				-0.1
3,434,374	-				+0.1
3,434,472	+				+0.7
3,434,472	+				+0.3
3,434,513	+				+0.2
3,434,514	-				+0.5
3,434,570	+				+0.3
3,434,571	-				-0.4
3,434,581	+				+0.1
3,434,606	+				+0.7
3,434,871	+		HER17_RS15330	0.44	+0.3
3,434,871	+		HER17_RS15330	0.44	+0.1
3,434,871	+		HER17_RS15330	0.44	+0.1
3,434,871	+		HER17_RS15330	0.44	-1.5
3,434,872	-		HER17_RS15330	0.45	-0.3
3,434,874	+		HER17_RS15330	0.45	+0.4
3,434,874	+		HER17_RS15330	0.45	-0.7
3,434,874	+		HER17_RS15330	0.45	+0.9
3,434,875	-		HER17_RS15330	0.45	-0.0
3,434,875	-		HER17_RS15330	0.45	+0.1
3,434,945	-		HER17_RS15330	0.56	-0.5
3,434,949	+		HER17_RS15330	0.57	-0.8
3,435,066	+		HER17_RS15330	0.76	-0.1
3,435,067	-		HER17_RS15330	0.76	+0.8
3,435,067	-		HER17_RS15330	0.76	-0.0
3,435,105	-		HER17_RS15330	0.82	-0.3
3,435,200	+				+0.5
3,435,201	-				+0.3
3,435,201	-				-1.4
3,435,201	-				+0.8
3,435,265	+				+0.5
3,435,265	+				+0.5
3,435,266	-				+0.5
3,435,266	-				+0.4
3,435,271	-				+0.1
3,435,271	-				+1.1
3,435,287	-				-0.3
3,435,287	-				-0.3
3,435,288	+				-1.6
3,435,288	+				-0.9
3,435,288	+				+0.1
3,435,289	-				-0.9
3,435,289	-				+0.4
3,435,320	+				+0.0
3,435,320	+				+1.5
3,435,321	-				+0.5
3,435,394	+				-0.3
3,435,395	-				+0.5
3,435,529	-		HER17_RS15335	0.67	-0.6
3,435,539	-		HER17_RS15335	0.71	+0.1
3,435,539	-		HER17_RS15335	0.71	-0.8
3,435,541	-		HER17_RS15335	0.72	+1.5
3,435,541	-		HER17_RS15335	0.72	+0.3
3,435,593	+				+0.4
3,435,662	-				-0.2
3,435,726	+				-0.3
3,435,726	+				+0.5
3,435,726	+				+0.3
3,435,727	-				-1.3
3,435,733	+				-0.4
3,435,734	-				+0.3
3,435,818	+				-0.0
3,435,889	-				-0.4
3,436,045	+				+0.8
3,436,045	+				-0.5
3,436,045	+				-0.2
3,436,046	-				-0.0
3,436,130	+		HER17_RS15340	0.10	-0.3
3,436,131	-		HER17_RS15340	0.10	-0.1
3,436,141	-		HER17_RS15340	0.10	+0.4
3,436,180	+		HER17_RS15340	0.12	-0.3