Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS14140

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,171,293	+				+0.4
3,171,440	+		HER17_RS14135	0.17	-0.0
3,171,445	+		HER17_RS14135	0.17	-0.1
3,171,588	+		HER17_RS14135	0.34	-0.5
3,171,588	+		HER17_RS14135	0.34	-0.6
3,171,588	+		HER17_RS14135	0.34	+0.4
3,171,588	+		HER17_RS14135	0.34	+0.3
3,171,589	-		HER17_RS14135	0.34	-0.8
3,171,589	-		HER17_RS14135	0.34	+0.7
3,171,801	+		HER17_RS14135	0.58	-0.8
3,171,836	+		HER17_RS14135	0.63	+0.0
3,171,853	-		HER17_RS14135	0.64	-0.0
3,171,853	-		HER17_RS14135	0.64	+0.0
3,171,853	-		HER17_RS14135	0.64	-0.2
3,171,893	-		HER17_RS14135	0.69	+0.8
3,171,893	-		HER17_RS14135	0.69	-0.4
3,172,015	-		HER17_RS14135	0.83	-0.7
3,172,015	-		HER17_RS14135	0.83	-0.5
3,172,041	+		HER17_RS14135	0.86	-0.6
3,172,042	-		HER17_RS14135	0.86	+0.6
3,172,135	+				-0.1
3,172,159	-				-0.2
3,172,245	+				+0.3
3,172,245	+				-0.2
3,172,246	-				-0.9
3,172,246	-				-0.3
3,172,246	-				-0.1
3,172,246	-				-0.3
3,172,246	-				+0.6
3,172,257	-				+0.4
3,172,356	-				-1.8
3,172,380	+				-0.1
3,172,381	-				-0.2
3,172,388	-				+0.2
3,172,388	-				-2.1
3,172,455	+		HER17_RS14140	0.15	+0.1
3,172,456	-		HER17_RS14140	0.15	+1.1
3,172,456	-		HER17_RS14140	0.15	+0.5
3,172,503	+		HER17_RS14140	0.19	-0.6
3,172,678	-		HER17_RS14140	0.35	-1.3
3,172,678	-		HER17_RS14140	0.35	+0.6
3,172,678	-		HER17_RS14140	0.35	-0.9
3,172,679	+		HER17_RS14140	0.35	+0.4
3,172,679	+		HER17_RS14140	0.35	-0.7
3,172,679	+		HER17_RS14140	0.35	+0.6
3,172,679	+		HER17_RS14140	0.35	+0.2
3,172,679	+		HER17_RS14140	0.35	+1.0
3,172,679	+		HER17_RS14140	0.35	-0.8
3,172,680	-		HER17_RS14140	0.35	-0.7
3,172,680	-		HER17_RS14140	0.35	-0.1
3,172,680	-		HER17_RS14140	0.35	-0.8
3,172,680	-		HER17_RS14140	0.35	+0.7
3,172,680	-		HER17_RS14140	0.35	+0.5
3,172,744	-		HER17_RS14140	0.41	+0.2
3,172,832	+		HER17_RS14140	0.49	-0.6
3,172,832	+		HER17_RS14140	0.49	-0.2
3,172,833	-		HER17_RS14140	0.49	+0.6
3,172,906	+		HER17_RS14140	0.56	-0.4
3,172,906	+		HER17_RS14140	0.56	+0.2
3,172,907	-		HER17_RS14140	0.56	-1.4
3,172,907	-		HER17_RS14140	0.56	+0.9
3,172,907	-		HER17_RS14140	0.56	+0.2
3,172,907	-		HER17_RS14140	0.56	-0.4
3,172,907	-		HER17_RS14140	0.56	+0.4
3,172,909	+		HER17_RS14140	0.56	+0.5
3,173,153	-		HER17_RS14140	0.78	-0.7
3,173,215	-		HER17_RS14140	0.84	-0.0
3,173,326	+				-0.8
3,173,327	-				+0.4
3,173,327	-				+0.6
3,173,358	+				+0.1
3,173,405	-				+0.5
3,173,445	+				+0.9
3,173,445	+				-1.0
3,173,445	+				-0.3
3,173,446	-				+0.0
3,173,446	-				+0.4
3,173,450	+				-0.3
3,173,450	+				-0.1
3,173,450	+				-1.3
3,173,451	-				-1.0
3,173,451	-				-0.4
3,173,451	-				+0.0
3,173,454	+				-0.1
3,173,454	+				+0.1
3,173,455	-				-0.1
3,173,459	+				+0.3
3,173,496	+				-1.0
3,173,496	+				+0.0
3,173,518	+				+0.1
3,173,518	+				-0.7
3,173,519	-				-1.4
3,173,659	-		HER17_RS14145	0.14	-0.5
3,173,794	+		HER17_RS14145	0.25	-0.2
3,173,823	-		HER17_RS14145	0.27	-0.0
3,173,830	+		HER17_RS14145	0.27	-0.3
3,173,831	-		HER17_RS14145	0.27	+0.0
3,173,837	+		HER17_RS14145	0.28	-0.2
3,173,905	+		HER17_RS14145	0.33	+0.7
3,173,905	+		HER17_RS14145	0.33	-0.2
3,173,906	-		HER17_RS14145	0.33	+0.6
3,173,906	-		HER17_RS14145	0.33	-0.8
3,173,962	+		HER17_RS14145	0.37	-0.4
3,173,963	-		HER17_RS14145	0.38	-0.1
3,174,017	+		HER17_RS14145	0.42	-0.4
3,174,018	-		HER17_RS14145	0.42	-1.2
3,174,018	-		HER17_RS14145	0.42	+0.2
3,174,018	-		HER17_RS14145	0.42	-0.2
3,174,073	+		HER17_RS14145	0.46	+0.5
3,174,074	-		HER17_RS14145	0.46	-0.5
3,174,336	-		HER17_RS14145	0.66	+0.6