Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS11560 and HER17_RS11565 are separated by 184 nucleotides HER17_RS11565 and HER17_RS11570 overlap by 4 nucleotides HER17_RS11570 and HER17_RS11575 are separated by 162 nucleotides
HER17_RS11560: HER17_RS11560 - OFA family MFS transporter, at 2,567,937 to 2,569,160
_RS11560
HER17_RS11565: HER17_RS11565 - LytTR family DNA-binding domain-containing protein, at 2,569,345 to 2,570,094
_RS11565
HER17_RS11570: HER17_RS11570 - sensor histidine kinase, at 2,570,091 to 2,571,836
_RS11570
HER17_RS11575: HER17_RS11575 - EAL domain-containing protein, at 2,571,999 to 2,574,167
_RS11575
Position (kb)
2570
2571
2572 Strain fitness (log2 ratio)
-2
-1
0
1 at 2569.115 kb on + strand at 2569.115 kb on + strand at 2569.116 kb on - strand at 2569.116 kb on - strand at 2569.154 kb on + strand at 2569.206 kb on + strand at 2569.214 kb on - strand at 2569.260 kb on + strand at 2569.278 kb on + strand at 2569.279 kb on - strand at 2569.375 kb on + strand at 2569.430 kb on + strand, within HER17_RS11565 at 2569.431 kb on - strand, within HER17_RS11565 at 2569.431 kb on - strand, within HER17_RS11565 at 2569.431 kb on - strand, within HER17_RS11565 at 2569.434 kb on + strand, within HER17_RS11565 at 2569.434 kb on + strand, within HER17_RS11565 at 2569.435 kb on - strand, within HER17_RS11565 at 2569.435 kb on - strand, within HER17_RS11565 at 2569.435 kb on - strand, within HER17_RS11565 at 2569.484 kb on + strand, within HER17_RS11565 at 2569.509 kb on - strand, within HER17_RS11565 at 2569.509 kb on - strand, within HER17_RS11565 at 2569.509 kb on - strand, within HER17_RS11565 at 2569.542 kb on + strand, within HER17_RS11565 at 2569.578 kb on - strand, within HER17_RS11565 at 2569.578 kb on - strand, within HER17_RS11565 at 2569.610 kb on + strand, within HER17_RS11565 at 2569.611 kb on - strand, within HER17_RS11565 at 2569.613 kb on + strand, within HER17_RS11565 at 2569.613 kb on + strand, within HER17_RS11565 at 2569.614 kb on - strand, within HER17_RS11565 at 2569.614 kb on - strand, within HER17_RS11565 at 2569.617 kb on + strand, within HER17_RS11565 at 2569.618 kb on - strand, within HER17_RS11565 at 2569.639 kb on - strand, within HER17_RS11565 at 2569.662 kb on + strand, within HER17_RS11565 at 2569.662 kb on + strand, within HER17_RS11565 at 2569.663 kb on - strand, within HER17_RS11565 at 2569.787 kb on + strand, within HER17_RS11565 at 2569.794 kb on + strand, within HER17_RS11565 at 2569.803 kb on - strand, within HER17_RS11565 at 2569.847 kb on + strand, within HER17_RS11565 at 2569.847 kb on + strand, within HER17_RS11565 at 2569.848 kb on - strand, within HER17_RS11565 at 2569.868 kb on + strand, within HER17_RS11565 at 2569.875 kb on + strand, within HER17_RS11565 at 2569.876 kb on - strand, within HER17_RS11565 at 2569.894 kb on - strand, within HER17_RS11565 at 2569.962 kb on + strand, within HER17_RS11565 at 2569.962 kb on + strand, within HER17_RS11565 at 2569.963 kb on - strand, within HER17_RS11565 at 2570.016 kb on + strand, within HER17_RS11565 at 2570.016 kb on + strand, within HER17_RS11565 at 2570.019 kb on + strand, within HER17_RS11565 at 2570.020 kb on - strand at 2570.020 kb on - strand at 2570.042 kb on + strand at 2570.042 kb on + strand at 2570.042 kb on + strand at 2570.082 kb on + strand at 2570.083 kb on - strand at 2570.174 kb on + strand at 2570.191 kb on + strand at 2570.197 kb on + strand at 2570.197 kb on + strand at 2570.228 kb on + strand at 2570.228 kb on + strand at 2570.246 kb on - strand at 2570.289 kb on - strand, within HER17_RS11570 at 2570.289 kb on - strand, within HER17_RS11570 at 2570.289 kb on - strand, within HER17_RS11570 at 2570.432 kb on + strand, within HER17_RS11570 at 2570.432 kb on + strand, within HER17_RS11570 at 2570.469 kb on + strand, within HER17_RS11570 at 2570.470 kb on - strand, within HER17_RS11570 at 2570.488 kb on + strand, within HER17_RS11570 at 2570.493 kb on + strand, within HER17_RS11570 at 2570.494 kb on - strand, within HER17_RS11570 at 2570.512 kb on + strand, within HER17_RS11570 at 2570.512 kb on + strand, within HER17_RS11570 at 2570.513 kb on - strand, within HER17_RS11570 at 2570.513 kb on - strand, within HER17_RS11570 at 2570.524 kb on - strand, within HER17_RS11570 at 2570.524 kb on - strand, within HER17_RS11570 at 2570.524 kb on - strand, within HER17_RS11570 at 2570.558 kb on + strand, within HER17_RS11570 at 2570.560 kb on + strand, within HER17_RS11570 at 2570.561 kb on - strand, within HER17_RS11570 at 2570.561 kb on - strand, within HER17_RS11570 at 2570.589 kb on + strand, within HER17_RS11570 at 2570.592 kb on - strand, within HER17_RS11570 at 2570.625 kb on - strand, within HER17_RS11570 at 2570.625 kb on - strand, within HER17_RS11570 at 2570.626 kb on + strand, within HER17_RS11570 at 2570.626 kb on + strand, within HER17_RS11570 at 2570.682 kb on - strand, within HER17_RS11570 at 2570.687 kb on + strand, within HER17_RS11570 at 2570.687 kb on + strand, within HER17_RS11570 at 2570.687 kb on + strand, within HER17_RS11570 at 2570.687 kb on + strand, within HER17_RS11570 at 2570.687 kb on + strand, within HER17_RS11570 at 2570.688 kb on - strand, within HER17_RS11570 at 2570.738 kb on + strand, within HER17_RS11570 at 2570.765 kb on + strand, within HER17_RS11570 at 2570.766 kb on - strand, within HER17_RS11570 at 2570.857 kb on + strand, within HER17_RS11570 at 2570.857 kb on + strand, within HER17_RS11570 at 2570.858 kb on - strand, within HER17_RS11570 at 2570.861 kb on + strand, within HER17_RS11570 at 2570.862 kb on - strand, within HER17_RS11570 at 2570.862 kb on - strand, within HER17_RS11570 at 2570.868 kb on - strand, within HER17_RS11570 at 2570.884 kb on + strand, within HER17_RS11570 at 2571.047 kb on + strand, within HER17_RS11570 at 2571.048 kb on - strand, within HER17_RS11570 at 2571.050 kb on - strand, within HER17_RS11570 at 2571.170 kb on + strand, within HER17_RS11570 at 2571.170 kb on + strand, within HER17_RS11570 at 2571.171 kb on - strand, within HER17_RS11570 at 2571.287 kb on + strand, within HER17_RS11570 at 2571.288 kb on - strand, within HER17_RS11570 at 2571.343 kb on - strand, within HER17_RS11570 at 2571.367 kb on - strand, within HER17_RS11570 at 2571.367 kb on - strand, within HER17_RS11570 at 2571.367 kb on - strand, within HER17_RS11570 at 2571.458 kb on - strand, within HER17_RS11570 at 2571.488 kb on + strand, within HER17_RS11570 at 2571.590 kb on + strand, within HER17_RS11570 at 2571.644 kb on + strand, within HER17_RS11570 at 2571.655 kb on + strand, within HER17_RS11570 at 2571.659 kb on + strand, within HER17_RS11570 at 2571.659 kb on + strand, within HER17_RS11570 at 2571.660 kb on - strand, within HER17_RS11570 at 2571.736 kb on - strand at 2571.736 kb on - strand at 2571.736 kb on - strand at 2571.931 kb on + strand at 2571.931 kb on + strand at 2571.932 kb on - strand at 2571.974 kb on + strand at 2571.975 kb on - strand at 2571.975 kb on - strand at 2572.000 kb on + strand at 2572.001 kb on - strand at 2572.008 kb on + strand at 2572.009 kb on - strand at 2572.009 kb on - strand at 2572.017 kb on - strand at 2572.029 kb on + strand at 2572.122 kb on + strand at 2572.174 kb on + strand at 2572.174 kb on + strand at 2572.265 kb on - strand, within HER17_RS11575 at 2572.272 kb on - strand, within HER17_RS11575 at 2572.272 kb on - strand, within HER17_RS11575 at 2572.343 kb on + strand, within HER17_RS11575 at 2572.343 kb on + strand, within HER17_RS11575 at 2572.344 kb on - strand, within HER17_RS11575 at 2572.344 kb on - strand, within HER17_RS11575 at 2572.344 kb on - strand, within HER17_RS11575 at 2572.344 kb on - strand, within HER17_RS11575 at 2572.348 kb on - strand, within HER17_RS11575 at 2572.361 kb on + strand, within HER17_RS11575 at 2572.361 kb on + strand, within HER17_RS11575 at 2572.362 kb on - strand, within HER17_RS11575 at 2572.362 kb on - strand, within HER17_RS11575 at 2572.386 kb on - strand, within HER17_RS11575 at 2572.449 kb on - strand, within HER17_RS11575 at 2572.449 kb on - strand, within HER17_RS11575 at 2572.466 kb on + strand, within HER17_RS11575 at 2572.467 kb on - strand, within HER17_RS11575 at 2572.631 kb on + strand, within HER17_RS11575 at 2572.631 kb on + strand, within HER17_RS11575 at 2572.632 kb on - strand, within HER17_RS11575 at 2572.717 kb on + strand, within HER17_RS11575 at 2572.718 kb on - strand, within HER17_RS11575 at 2572.718 kb on - strand, within HER17_RS11575 at 2572.718 kb on - strand, within HER17_RS11575 at 2572.745 kb on - strand, within HER17_RS11575
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,569,115 + -0.3 2,569,115 + -0.1 2,569,116 - +0.9 2,569,116 - +0.6 2,569,154 + +0.4 2,569,206 + +0.6 2,569,214 - -0.2 2,569,260 + +0.3 2,569,278 + -0.1 2,569,279 - +0.1 2,569,375 + +0.9 2,569,430 + HER17_RS11565 0.11 -0.1 2,569,431 - HER17_RS11565 0.11 -0.4 2,569,431 - HER17_RS11565 0.11 +0.1 2,569,431 - HER17_RS11565 0.11 +0.8 2,569,434 + HER17_RS11565 0.12 +0.4 2,569,434 + HER17_RS11565 0.12 +0.6 2,569,435 - HER17_RS11565 0.12 -1.0 2,569,435 - HER17_RS11565 0.12 +0.4 2,569,435 - HER17_RS11565 0.12 +0.1 2,569,484 + HER17_RS11565 0.19 +0.3 2,569,509 - HER17_RS11565 0.22 -0.2 2,569,509 - HER17_RS11565 0.22 -1.7 2,569,509 - HER17_RS11565 0.22 +0.2 2,569,542 + HER17_RS11565 0.26 +0.3 2,569,578 - HER17_RS11565 0.31 -1.0 2,569,578 - HER17_RS11565 0.31 -0.8 2,569,610 + HER17_RS11565 0.35 +0.7 2,569,611 - HER17_RS11565 0.35 -0.1 2,569,613 + HER17_RS11565 0.36 -0.2 2,569,613 + HER17_RS11565 0.36 -0.1 2,569,614 - HER17_RS11565 0.36 +0.5 2,569,614 - HER17_RS11565 0.36 -0.9 2,569,617 + HER17_RS11565 0.36 +0.1 2,569,618 - HER17_RS11565 0.36 -1.0 2,569,639 - HER17_RS11565 0.39 -0.4 2,569,662 + HER17_RS11565 0.42 -0.4 2,569,662 + HER17_RS11565 0.42 -0.1 2,569,663 - HER17_RS11565 0.42 +0.0 2,569,787 + HER17_RS11565 0.59 +0.9 2,569,794 + HER17_RS11565 0.60 -1.1 2,569,803 - HER17_RS11565 0.61 -0.1 2,569,847 + HER17_RS11565 0.67 +0.5 2,569,847 + HER17_RS11565 0.67 -0.2 2,569,848 - HER17_RS11565 0.67 +0.4 2,569,868 + HER17_RS11565 0.70 +0.6 2,569,875 + HER17_RS11565 0.71 -0.1 2,569,876 - HER17_RS11565 0.71 -0.1 2,569,894 - HER17_RS11565 0.73 -0.7 2,569,962 + HER17_RS11565 0.82 -0.2 2,569,962 + HER17_RS11565 0.82 -0.4 2,569,963 - HER17_RS11565 0.82 -0.2 2,570,016 + HER17_RS11565 0.89 -0.1 2,570,016 + HER17_RS11565 0.89 +0.7 2,570,019 + HER17_RS11565 0.90 -0.1 2,570,020 - +0.4 2,570,020 - -0.3 2,570,042 + -0.6 2,570,042 + +0.6 2,570,042 + +0.4 2,570,082 + +0.5 2,570,083 - -0.8 2,570,174 + -0.1 2,570,191 + -0.1 2,570,197 + -1.4 2,570,197 + +0.6 2,570,228 + -0.0 2,570,228 + +0.1 2,570,246 - +0.2 2,570,289 - HER17_RS11570 0.11 -0.1 2,570,289 - HER17_RS11570 0.11 +0.6 2,570,289 - HER17_RS11570 0.11 +0.1 2,570,432 + HER17_RS11570 0.20 +0.7 2,570,432 + HER17_RS11570 0.20 +0.2 2,570,469 + HER17_RS11570 0.22 -0.7 2,570,470 - HER17_RS11570 0.22 +1.0 2,570,488 + HER17_RS11570 0.23 +0.4 2,570,493 + HER17_RS11570 0.23 +0.6 2,570,494 - HER17_RS11570 0.23 -1.7 2,570,512 + HER17_RS11570 0.24 +0.3 2,570,512 + HER17_RS11570 0.24 +0.3 2,570,513 - HER17_RS11570 0.24 -1.0 2,570,513 - HER17_RS11570 0.24 -0.6 2,570,524 - HER17_RS11570 0.25 -0.6 2,570,524 - HER17_RS11570 0.25 -0.9 2,570,524 - HER17_RS11570 0.25 -0.3 2,570,558 + HER17_RS11570 0.27 +0.4 2,570,560 + HER17_RS11570 0.27 -0.7 2,570,561 - HER17_RS11570 0.27 -0.3 2,570,561 - HER17_RS11570 0.27 -0.7 2,570,589 + HER17_RS11570 0.29 -1.3 2,570,592 - HER17_RS11570 0.29 +0.3 2,570,625 - HER17_RS11570 0.31 +0.2 2,570,625 - HER17_RS11570 0.31 +0.9 2,570,626 + HER17_RS11570 0.31 +0.6 2,570,626 + HER17_RS11570 0.31 +0.2 2,570,682 - HER17_RS11570 0.34 +0.5 2,570,687 + HER17_RS11570 0.34 -0.1 2,570,687 + HER17_RS11570 0.34 -0.2 2,570,687 + HER17_RS11570 0.34 -0.4 2,570,687 + HER17_RS11570 0.34 -0.5 2,570,687 + HER17_RS11570 0.34 +0.1 2,570,688 - HER17_RS11570 0.34 -0.0 2,570,738 + HER17_RS11570 0.37 +0.6 2,570,765 + HER17_RS11570 0.39 -1.5 2,570,766 - HER17_RS11570 0.39 +0.1 2,570,857 + HER17_RS11570 0.44 +0.1 2,570,857 + HER17_RS11570 0.44 +0.0 2,570,858 - HER17_RS11570 0.44 -0.1 2,570,861 + HER17_RS11570 0.44 +0.3 2,570,862 - HER17_RS11570 0.44 -0.4 2,570,862 - HER17_RS11570 0.44 +0.3 2,570,868 - HER17_RS11570 0.45 -1.4 2,570,884 + HER17_RS11570 0.45 +0.7 2,571,047 + HER17_RS11570 0.55 -0.2 2,571,048 - HER17_RS11570 0.55 -0.1 2,571,050 - HER17_RS11570 0.55 -1.0 2,571,170 + HER17_RS11570 0.62 +0.9 2,571,170 + HER17_RS11570 0.62 -0.3 2,571,171 - HER17_RS11570 0.62 -1.3 2,571,287 + HER17_RS11570 0.68 -1.2 2,571,288 - HER17_RS11570 0.69 -0.4 2,571,343 - HER17_RS11570 0.72 +0.6 2,571,367 - HER17_RS11570 0.73 +0.3 2,571,367 - HER17_RS11570 0.73 -0.3 2,571,367 - HER17_RS11570 0.73 -0.1 2,571,458 - HER17_RS11570 0.78 -0.5 2,571,488 + HER17_RS11570 0.80 +0.5 2,571,590 + HER17_RS11570 0.86 -0.6 2,571,644 + HER17_RS11570 0.89 -0.1 2,571,655 + HER17_RS11570 0.90 +0.4 2,571,659 + HER17_RS11570 0.90 -0.0 2,571,659 + HER17_RS11570 0.90 +0.5 2,571,660 - HER17_RS11570 0.90 +1.0 2,571,736 - +0.1 2,571,736 - -0.7 2,571,736 - -0.3 2,571,931 + -2.0 2,571,931 + +0.8 2,571,932 - -0.7 2,571,974 + -0.1 2,571,975 - +0.7 2,571,975 - -0.1 2,572,000 + -1.4 2,572,001 - -0.3 2,572,008 + +0.4 2,572,009 - -0.5 2,572,009 - +0.1 2,572,017 - +0.3 2,572,029 + +0.3 2,572,122 + -1.1 2,572,174 + -1.3 2,572,174 + +0.5 2,572,265 - HER17_RS11575 0.12 -0.8 2,572,272 - HER17_RS11575 0.13 -0.4 2,572,272 - HER17_RS11575 0.13 +0.3 2,572,343 + HER17_RS11575 0.16 -2.3 2,572,343 + HER17_RS11575 0.16 -0.2 2,572,344 - HER17_RS11575 0.16 +0.6 2,572,344 - HER17_RS11575 0.16 +0.1 2,572,344 - HER17_RS11575 0.16 -0.9 2,572,344 - HER17_RS11575 0.16 +0.6 2,572,348 - HER17_RS11575 0.16 +0.2 2,572,361 + HER17_RS11575 0.17 +0.1 2,572,361 + HER17_RS11575 0.17 +0.3 2,572,362 - HER17_RS11575 0.17 -0.3 2,572,362 - HER17_RS11575 0.17 -0.5 2,572,386 - HER17_RS11575 0.18 +0.3 2,572,449 - HER17_RS11575 0.21 +0.4 2,572,449 - HER17_RS11575 0.21 +0.4 2,572,466 + HER17_RS11575 0.22 -0.3 2,572,467 - HER17_RS11575 0.22 +0.6 2,572,631 + HER17_RS11575 0.29 +0.6 2,572,631 + HER17_RS11575 0.29 -0.0 2,572,632 - HER17_RS11575 0.29 +0.4 2,572,717 + HER17_RS11575 0.33 -0.4 2,572,718 - HER17_RS11575 0.33 +0.1 2,572,718 - HER17_RS11575 0.33 -0.4 2,572,718 - HER17_RS11575 0.33 -0.6 2,572,745 - HER17_RS11575 0.34 +0.4
Or see this region's nucleotide sequence