Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS10930

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,439,900	+		HER17_RS21970	0.40	+1.0
2,439,901	-		HER17_RS21970	0.41	-0.8
2,440,104	-		HER17_RS21970	0.53	-0.2
2,440,107	+		HER17_RS21970	0.53	+0.2
2,440,107	+		HER17_RS21970	0.53	+0.2
2,440,108	-		HER17_RS21970	0.53	-0.5
2,440,274	-		HER17_RS21970	0.63	+1.1
2,440,278	+		HER17_RS21970	0.63	-1.5
2,440,282	+		HER17_RS21970	0.63	+0.3
2,440,282	+		HER17_RS21970	0.63	-0.2
2,440,282	+		HER17_RS21970	0.63	+1.1
2,440,283	-		HER17_RS21970	0.64	+0.6
2,440,283	-		HER17_RS21970	0.64	-0.2
2,440,283	-		HER17_RS21970	0.64	+0.2
2,440,283	-		HER17_RS21970	0.64	+0.7
2,440,469	+		HER17_RS21970	0.75	-0.9
2,440,470	-		HER17_RS21970	0.75	-0.1
2,440,470	-		HER17_RS21970	0.75	+0.6
2,440,471	+		HER17_RS21970	0.75	+0.3
2,440,671	+		HER17_RS21970	0.87	+0.3
2,440,672	-		HER17_RS21970	0.87	-0.7
2,440,719	+		HER17_RS21970	0.90	-0.5
2,440,720	-		HER17_RS21970	0.90	+0.1
2,440,720	-		HER17_RS21970	0.90	-0.0
2,440,720	-		HER17_RS21970	0.90	+0.8
2,440,726	+				+0.1
2,440,840	+				-0.2
2,440,840	+				+0.0
2,440,841	-				-0.7
2,440,853	+				-1.2
2,440,886	+				-0.8
2,440,909	+				+0.2
2,440,909	+				-0.1
2,440,910	-				-0.6
2,440,912	+				+0.6
2,440,913	-				-0.0
2,440,913	-				-0.2
2,440,913	-				+0.3
2,440,913	-				-0.9
2,440,916	+				+0.9
2,440,917	-				+0.5
2,440,917	-				-0.7
2,440,917	-				+0.5
2,440,931	+				+0.1
2,441,017	-				+0.3
2,441,036	+		HER17_RS10930	0.10	+0.3
2,441,036	+		HER17_RS10930	0.10	-0.4
2,441,048	+		HER17_RS10930	0.11	+0.4
2,441,130	-		HER17_RS10930	0.17	+0.1
2,441,172	+		HER17_RS10930	0.20	+0.5
2,441,219	-		HER17_RS10930	0.24	-0.3
2,441,249	+		HER17_RS10930	0.26	-0.4
2,441,250	-		HER17_RS10930	0.26	-0.2
2,441,268	+		HER17_RS10930	0.27	+0.4
2,441,283	+		HER17_RS10930	0.28	-0.2
2,441,284	-		HER17_RS10930	0.28	-0.2
2,441,335	-		HER17_RS10930	0.32	+0.4
2,441,371	+		HER17_RS10930	0.35	-0.4
2,441,407	+		HER17_RS10930	0.37	+0.1
2,441,712	+		HER17_RS10930	0.60	+0.8
2,441,712	+		HER17_RS10930	0.60	-0.2
2,441,713	-		HER17_RS10930	0.60	-0.9
2,441,766	+		HER17_RS10930	0.64	-0.4
2,441,767	-		HER17_RS10930	0.64	-0.0
2,441,767	-		HER17_RS10930	0.64	-0.2
2,441,817	+		HER17_RS10930	0.67	+0.2
2,441,876	-		HER17_RS10930	0.72	-0.4
2,441,876	-		HER17_RS10930	0.72	+0.0
2,441,876	-		HER17_RS10930	0.72	+0.4
2,442,024	+		HER17_RS10930	0.82	+0.4
2,442,025	-		HER17_RS10930	0.83	+0.9
2,442,056	+		HER17_RS10930	0.85	+0.9
2,442,057	-		HER17_RS10930	0.85	-0.5
2,442,132	-				-0.8
2,442,244	+				+0.3
2,442,244	+				+1.2
2,442,244	+				-0.5
2,442,244	+				-0.1
2,442,244	+				+0.9
2,442,244	+				+0.6
2,442,244	+				-0.3
2,442,245	-				-0.8
2,442,245	-				+0.3
2,442,245	-				-1.5
2,442,298	+				+0.2
2,442,463	-		HER17_RS10935	0.16	-1.6
2,442,496	+		HER17_RS10935	0.18	+1.5
2,442,497	-		HER17_RS10935	0.18	+0.2
2,442,674	-		HER17_RS10935	0.33	+1.0
2,442,674	-		HER17_RS10935	0.33	-0.1
2,442,676	-		HER17_RS10935	0.33	+0.6
2,442,818	-		HER17_RS10935	0.45	+0.0
2,442,832	+		HER17_RS10935	0.46	-0.0
2,442,833	-		HER17_RS10935	0.47	-0.3
2,442,833	-		HER17_RS10935	0.47	+0.3
2,442,833	-		HER17_RS10935	0.47	+0.5
2,443,018	-		HER17_RS10935	0.62	-1.3
2,443,111	+		HER17_RS10935	0.70	-0.5
2,443,111	+		HER17_RS10935	0.70	+0.3
2,443,112	-		HER17_RS10935	0.70	-1.4
2,443,219	+		HER17_RS10935	0.79	+0.6
2,443,219	+		HER17_RS10935	0.79	+0.7
2,443,220	-		HER17_RS10935	0.79	-1.5