Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS09805

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,168,180	+				+0.1
2,168,180	+				-2.2
2,168,181	-				-0.4
2,168,181	-				-0.9
2,168,184	+				+0.0
2,168,184	+				+0.3
2,168,184	+				+0.0
2,168,184	+				+1.1
2,168,184	+				+0.8
2,168,184	+				+0.1
2,168,184	+				-0.5
2,168,185	-				+2.0
2,168,185	-				+0.5
2,168,185	-				-0.7
2,168,185	-				+1.4
2,168,219	-				-0.3
2,168,250	+				+0.6
2,168,251	-				+0.6
2,168,251	-				+0.1
2,168,251	-				+0.3
2,168,281	+				+0.6
2,168,282	-				-0.7
2,168,290	-				-0.6
2,168,290	-				+0.3
2,168,290	-				-0.0
2,168,290	-				-0.7
2,168,349	+				-0.1
2,168,350	-				-2.0
2,168,360	-				+0.1
2,168,513	+		HER17_RS09800	0.35	-0.4
2,168,513	+		HER17_RS09800	0.35	+1.4
2,168,895	+				-0.1
2,168,958	-				+0.1
2,168,998	+		HER17_RS09805	0.11	+0.3
2,168,998	+		HER17_RS09805	0.11	+0.7
2,169,012	-		HER17_RS09805	0.14	+0.3
2,169,049	+		HER17_RS09805	0.22	-0.0
2,169,154	+		HER17_RS09805	0.44	+0.0
2,169,154	+		HER17_RS09805	0.44	+0.0
2,169,154	+		HER17_RS09805	0.44	+0.3
2,169,154	+		HER17_RS09805	0.44	+0.1
2,169,155	-		HER17_RS09805	0.44	+0.2
2,169,206	+		HER17_RS09805	0.55	-0.0
2,169,326	+		HER17_RS09805	0.81	-0.1
2,169,327	-		HER17_RS09805	0.81	-1.0
2,169,327	-		HER17_RS09805	0.81	+1.1
2,169,363	-		HER17_RS09805	0.89	-0.9
2,169,363	-		HER17_RS09805	0.89	+0.2
2,169,363	-		HER17_RS09805	0.89	+0.7
2,169,408	+				-0.3
2,169,443	+				-0.1
2,169,454	-				-0.3
2,169,454	-				+0.3
2,169,532	+				+0.1
2,169,535	+				-0.4
2,169,535	+				+0.1
2,169,535	+				+0.1
2,169,741	-		HER17_RS09810	0.19	-0.1
2,169,741	-		HER17_RS09810	0.19	-0.2
2,169,757	-		HER17_RS09810	0.20	+0.1
2,170,152	+		HER17_RS09810	0.54	-0.0
2,170,184	-		HER17_RS09810	0.57	+0.2
2,170,226	+		HER17_RS09810	0.61	-0.5
2,170,226	+		HER17_RS09810	0.61	+0.5