Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS09505

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,089,485	+		HER17_RS09495	0.86	-3.7
2,089,533	+		HER17_RS09495	0.89	-1.8
2,089,533	+		HER17_RS09495	0.89	-1.3
2,089,534	-		HER17_RS09495	0.89	-0.6
2,089,748	-				-2.4
2,089,749	+				-1.8
2,089,749	+				-1.2
2,089,793	-				+0.3
2,089,864	+				-0.5
2,090,045	+		HER17_RS09500	0.34	+0.0
2,090,046	-		HER17_RS09500	0.34	-1.7
2,090,046	-		HER17_RS09500	0.34	+0.0
2,090,046	-		HER17_RS09500	0.34	+0.2
2,090,052	+		HER17_RS09500	0.36	+0.3
2,090,091	+		HER17_RS09500	0.45	-0.5
2,090,091	+		HER17_RS09500	0.45	+0.5
2,090,091	+		HER17_RS09500	0.45	+0.3
2,090,092	-		HER17_RS09500	0.45	-0.6
2,090,092	-		HER17_RS09500	0.45	+0.7
2,090,121	-		HER17_RS09500	0.51	+0.4
2,090,328	+				-0.1
2,090,329	-				-0.6
2,090,329	-				+0.2
2,090,340	+				-0.1
2,090,348	+				-0.0
2,090,392	+		HER17_RS09505	0.12	-0.1
2,090,417	+		HER17_RS09505	0.18	-0.3
2,090,417	+		HER17_RS09505	0.18	-0.3
2,090,417	+		HER17_RS09505	0.18	-0.3
2,090,417	+		HER17_RS09505	0.18	+1.4
2,090,418	-		HER17_RS09505	0.18	+0.2
2,090,440	+		HER17_RS09505	0.22	+0.5
2,090,440	+		HER17_RS09505	0.22	+0.1
2,090,440	+		HER17_RS09505	0.22	-0.7
2,090,441	-		HER17_RS09505	0.22	+0.4
2,090,442	+		HER17_RS09505	0.23	-0.9
2,090,442	+		HER17_RS09505	0.23	+0.5
2,090,442	+		HER17_RS09505	0.23	-0.3
2,090,443	-		HER17_RS09505	0.23	-0.0
2,090,443	-		HER17_RS09505	0.23	-0.1
2,090,487	+		HER17_RS09505	0.32	-0.1
2,090,488	-		HER17_RS09505	0.32	+0.1
2,090,520	+		HER17_RS09505	0.39	+0.1
2,090,535	+		HER17_RS09505	0.42	-0.0
2,090,570	+		HER17_RS09505	0.49	+0.0
2,090,570	+		HER17_RS09505	0.49	-0.2
2,090,570	+		HER17_RS09505	0.49	-0.0
2,090,579	+		HER17_RS09505	0.51	-0.0
2,090,579	+		HER17_RS09505	0.51	+0.1
2,090,579	+		HER17_RS09505	0.51	-0.6
2,090,580	-		HER17_RS09505	0.51	-0.1
2,090,612	+		HER17_RS09505	0.57	-0.4
2,090,755	+		HER17_RS09505	0.87	+0.1
2,090,755	+		HER17_RS09505	0.87	-1.8
2,090,756	-		HER17_RS09505	0.87	+0.5
2,090,785	-				-0.3
2,090,792	+				+0.6
2,090,793	-				+2.0
2,090,818	-				+0.4
2,090,818	-				+0.4
2,090,915	-				-0.2
2,090,915	-				-0.2
2,090,918	+				-0.5
2,090,919	-				-0.6
2,090,919	-				+0.6
2,090,919	-				-0.1
2,090,919	-				+0.1
2,090,921	+				+1.3
2,090,922	-				+0.4
2,090,922	-				+0.7
2,091,003	-				-1.8
2,091,007	+				-0.0
2,091,059	-				+0.6
2,091,062	+				-0.1
2,091,141	+				+0.8
2,091,141	+				-0.7
2,091,142	-				-0.2
2,091,161	+				-0.3
2,091,161	+				-0.3
2,091,161	+				-0.2
2,091,162	-				-0.4
2,091,162	-				-0.6
2,091,162	-				+0.2
2,091,162	-				+0.3
2,091,193	-				-0.4
2,091,199	+				+0.2
2,091,199	+				-2.0
2,091,199	+				-0.7
2,091,200	-				-0.8
2,091,200	-				+0.2
2,091,200	-				-0.4
2,091,200	-				-1.7
2,091,200	-				-0.6
2,091,240	+				+0.3
2,091,240	+				-0.1
2,091,250	-				+0.9
2,091,413	+		HER17_RS09510	0.14	-0.2
2,091,460	+		HER17_RS09510	0.17	+0.8
2,091,466	-		HER17_RS09510	0.17	+0.2
2,091,466	-		HER17_RS09510	0.17	-0.8
2,091,482	+		HER17_RS09510	0.18	+1.3
2,091,482	+		HER17_RS09510	0.18	+1.0
2,091,482	+		HER17_RS09510	0.18	+0.2
2,091,482	+		HER17_RS09510	0.18	+0.5
2,091,483	-		HER17_RS09510	0.19	-0.6
2,091,483	-		HER17_RS09510	0.19	-0.9
2,091,500	+		HER17_RS09510	0.20	-0.1
2,091,501	-		HER17_RS09510	0.20	-0.8
2,091,502	+		HER17_RS09510	0.20	-0.8
2,091,526	+		HER17_RS09510	0.21	+0.0
2,091,527	-		HER17_RS09510	0.21	+1.3
2,091,531	+		HER17_RS09510	0.22	-0.1
2,091,531	+		HER17_RS09510	0.22	-0.7
2,091,532	-		HER17_RS09510	0.22	-0.2
2,091,569	+		HER17_RS09510	0.24	+0.2
2,091,569	+		HER17_RS09510	0.24	-0.7
2,091,589	+		HER17_RS09510	0.25	-0.8
2,091,589	+		HER17_RS09510	0.25	-0.4
2,091,589	+		HER17_RS09510	0.25	-0.3
2,091,589	+		HER17_RS09510	0.25	+0.6
2,091,589	+		HER17_RS09510	0.25	+0.6
2,091,589	+		HER17_RS09510	0.25	-0.2
2,091,589	+		HER17_RS09510	0.25	+0.8
2,091,590	-		HER17_RS09510	0.26	-0.4
2,091,590	-		HER17_RS09510	0.26	-1.5
2,091,614	-		HER17_RS09510	0.27	+0.4
2,091,620	-		HER17_RS09510	0.28	-0.1
2,091,663	-		HER17_RS09510	0.30	+0.3