Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS08450

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,863,429	+		HER17_RS08445	0.59	+0.7
1,863,463	-		HER17_RS08445	0.60	+0.0
1,863,463	-		HER17_RS08445	0.60	+0.2
1,863,543	+		HER17_RS08445	0.64	+0.7
1,863,637	+		HER17_RS08445	0.69	-0.6
1,863,724	+		HER17_RS08445	0.73	+0.2
1,863,733	-		HER17_RS08445	0.73	+0.3
1,863,759	+		HER17_RS08445	0.75	-0.2
1,863,760	-		HER17_RS08445	0.75	+0.0
1,863,767	+		HER17_RS08445	0.75	-0.8
1,863,768	-		HER17_RS08445	0.75	-0.4
1,863,768	-		HER17_RS08445	0.75	+0.0
1,863,802	-		HER17_RS08445	0.77	-0.3
1,863,805	-		HER17_RS08445	0.77	+0.6
1,863,823	-		HER17_RS08445	0.78	+0.2
1,863,951	-		HER17_RS08445	0.84	-0.4
1,864,030	+		HER17_RS08445	0.88	+0.6
1,864,031	-		HER17_RS08445	0.88	+0.6
1,864,113	-				+0.0
1,864,154	+				+0.1
1,864,154	+				-0.1
1,864,159	+				+1.6
1,864,159	+				+0.2
1,864,160	-				-0.6
1,864,247	+				+0.4
1,864,267	-				+0.7
1,864,294	-				+1.0
1,864,322	+				+0.1
1,864,322	+				+0.3
1,864,322	+				-0.7
1,864,322	+				-0.2
1,864,325	+				-0.4
1,864,325	+				-1.2
1,864,339	-				+0.3
1,864,339	-				-1.1
1,864,379	-				+0.5
1,864,387	+				-0.4
1,864,418	+		HER17_RS08450	0.14	-1.7
1,864,419	-		HER17_RS08450	0.14	-0.8
1,864,422	+		HER17_RS08450	0.14	+0.7
1,864,422	+		HER17_RS08450	0.14	-0.0
1,864,422	+		HER17_RS08450	0.14	-0.4
1,864,423	-		HER17_RS08450	0.15	+1.2
1,864,433	+		HER17_RS08450	0.17	+0.0
1,864,464	-		HER17_RS08450	0.24	-0.1
1,864,509	+		HER17_RS08450	0.33	+0.6
1,864,509	+		HER17_RS08450	0.33	+1.0
1,864,510	-		HER17_RS08450	0.34	+0.3
1,864,560	+		HER17_RS08450	0.44	-0.2
1,864,623	+		HER17_RS08450	0.58	-0.4
1,864,623	+		HER17_RS08450	0.58	-0.0
1,864,623	+		HER17_RS08450	0.58	-1.2
1,864,623	+		HER17_RS08450	0.58	-0.3
1,864,623	+		HER17_RS08450	0.58	+1.3
1,864,623	+		HER17_RS08450	0.58	+0.5
1,864,624	-		HER17_RS08450	0.58	+0.2
1,864,624	-		HER17_RS08450	0.58	-0.4
1,864,688	-		HER17_RS08450	0.72	+0.1
1,864,688	-		HER17_RS08450	0.72	-0.0
1,864,721	+		HER17_RS08450	0.80	+1.9
1,864,734	+		HER17_RS08450	0.82	-0.3
1,864,735	-		HER17_RS08450	0.83	+0.7
1,864,749	-		HER17_RS08450	0.86	+0.7
1,864,749	-		HER17_RS08450	0.86	-0.5
1,864,796	+				-0.6
1,864,818	+				-1.3
1,864,837	+				-0.5
1,864,837	+				+0.3
1,864,837	+				+0.3
1,864,838	-				-0.1
1,864,841	-				-0.5
1,864,841	-				+0.3
1,864,859	+				-0.4
1,864,860	-				+0.7
1,864,860	-				-0.2
1,864,897	+				-0.4
1,865,022	+		HER17_RS08455	0.13	-0.5
1,865,023	-		HER17_RS08455	0.14	+1.3
1,865,042	+		HER17_RS08455	0.17	-0.3
1,865,043	-		HER17_RS08455	0.17	-0.3
1,865,043	-		HER17_RS08455	0.17	-0.2
1,865,043	-		HER17_RS08455	0.17	-0.4
1,865,051	+		HER17_RS08455	0.19	+0.1
1,865,051	+		HER17_RS08455	0.19	-0.7
1,865,051	+		HER17_RS08455	0.19	-1.5
1,865,052	-		HER17_RS08455	0.19	-0.4
1,865,117	+		HER17_RS08455	0.31	+0.2
1,865,117	+		HER17_RS08455	0.31	-0.9
1,865,118	-		HER17_RS08455	0.32	-1.1
1,865,118	-		HER17_RS08455	0.32	+0.2
1,865,118	-		HER17_RS08455	0.32	+0.7
1,865,125	-		HER17_RS08455	0.33	+0.1
1,865,125	-		HER17_RS08455	0.33	-2.0
1,865,141	-		HER17_RS08455	0.36	+0.1
1,865,182	+		HER17_RS08455	0.44	+0.2
1,865,182	+		HER17_RS08455	0.44	+0.8
1,865,225	-		HER17_RS08455	0.52	-0.0
1,865,241	+		HER17_RS08455	0.55	-0.5
1,865,242	-		HER17_RS08455	0.55	-2.4
1,865,276	-		HER17_RS08455	0.62	-0.5
1,865,397	-		HER17_RS08455	0.85	-0.1
1,865,428	+				+1.1
1,865,428	+				+0.2
1,865,429	-				-0.1
1,865,432	+				-0.2
1,865,476	+				+0.1
1,865,477	-				+1.0
1,865,496	+				+0.6
1,865,497	-				-0.3
1,865,497	-				-1.1
1,865,578	+				+0.0
1,865,578	+				+1.3
1,865,578	+				+0.5
1,865,578	+				-0.6
1,865,579	-				+0.1
1,865,579	-				+0.6
1,865,579	-				+0.1
1,865,579	-				+0.2
1,865,595	+				-0.3
1,865,595	+				+0.0
1,865,595	+				-0.4
1,865,596	-				-0.9
1,865,602	-				-0.7
1,865,616	+				+0.6
1,865,616	+				+0.3
1,865,623	-				+0.1
1,865,641	+				-0.3
1,865,641	+				-0.3
1,865,641	+				+0.3
1,865,641	+				-0.5
1,865,642	-				-0.1
1,865,697	-				-0.3
1,865,758	+		HER17_RS08460	0.21	-1.6
1,865,781	+		HER17_RS08460	0.27	-0.2