Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS08085

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,786,944	+				-0.0
1,786,950	+				-0.2
1,786,973	+				+0.3
1,786,991	+				+0.7
1,786,991	+				+0.9
1,787,046	+				+0.5
1,787,053	-				-1.3
1,787,053	-				-1.1
1,787,053	-				-0.4
1,787,053	-				-0.6
1,787,053	-				-0.0
1,787,053	-				-0.1
1,787,053	-				+0.4
1,787,053	-				-0.2
1,787,094	-				-0.9
1,787,106	+				+0.2
1,787,108	+				-0.2
1,787,192	+				-0.9
1,787,192	+				-0.4
1,787,218	+				-0.8
1,787,287	+				+1.5
1,787,287	+				-0.9
1,787,288	-				-0.6
1,787,288	-				-0.5
1,787,288	-				+0.5
1,787,288	-				-0.5
1,787,302	-				-0.2
1,787,331	-				-0.4
1,787,331	-				-1.1
1,787,371	+				-0.8
1,787,423	-				-0.2
1,787,452	+				+0.0
1,787,452	+				-0.5
1,787,452	+				+0.4
1,787,452	+				+0.2
1,787,453	-				-0.6
1,787,453	-				-1.8
1,787,456	-				-0.5
1,787,465	+				+0.4
1,787,466	-				-2.2
1,787,537	+				-0.7
1,787,537	+				-0.6
1,787,538	-				-0.5
1,787,538	-				+0.5
1,787,542	+				-0.9
1,787,542	+				-0.5
1,787,542	+				-0.4
1,787,543	-				-0.2
1,787,550	-				-1.2
1,787,576	-				-0.6
1,787,576	-				-0.6
1,787,582	-				-0.1
1,787,606	+				+0.0
1,787,607	-				+0.1
1,787,614	+		HER17_RS08080	0.11	+0.6
1,787,615	-		HER17_RS08080	0.11	-0.5
1,787,632	-		HER17_RS08080	0.16	+0.4
1,787,650	+		HER17_RS08080	0.21	+0.6
1,787,651	-		HER17_RS08080	0.21	-0.5
1,787,651	-		HER17_RS08080	0.21	-1.7
1,787,728	-		HER17_RS08080	0.43	-0.4
1,787,794	+		HER17_RS08080	0.62	-1.3
1,787,795	-		HER17_RS08080	0.62	-0.8
1,787,874	+		HER17_RS08080	0.85	-0.2
1,787,875	-		HER17_RS08080	0.85	+0.6
1,787,875	-		HER17_RS08080	0.85	-1.4
1,787,886	+		HER17_RS08080	0.88	+0.1
1,787,886	+		HER17_RS08080	0.88	+1.1
1,787,886	+		HER17_RS08080	0.88	+0.1
1,787,925	-				+0.3
1,787,925	-				-1.5
1,787,925	-				+1.4
1,787,928	+				-0.1
1,787,928	+				+0.0
1,787,928	+				+0.5
1,787,929	-				-0.4
1,787,929	-				-0.5
1,788,140	-		HER17_RS08085	0.36	-0.2
1,788,140	-		HER17_RS08085	0.36	+0.1
1,788,140	-		HER17_RS08085	0.36	-1.0
1,788,297	+		HER17_RS08085	0.63	-0.1
1,788,319	+		HER17_RS08085	0.67	+0.3
1,788,330	+		HER17_RS08085	0.69	-0.0
1,788,331	-		HER17_RS08085	0.69	-0.7
1,788,340	+		HER17_RS08085	0.71	+1.4
1,788,340	+		HER17_RS08085	0.71	-0.2
1,788,340	+		HER17_RS08085	0.71	+0.7
1,788,340	+		HER17_RS08085	0.71	-0.6
1,788,341	-		HER17_RS08085	0.71	-1.0
1,788,341	-		HER17_RS08085	0.71	-0.4
1,788,401	-		HER17_RS08085	0.81	-0.4
1,788,401	-		HER17_RS08085	0.81	-0.2
1,788,465	+				+0.5
1,788,465	+				+0.4
1,788,465	+				+0.8
1,788,466	-				-1.2
1,788,466	-				+0.1
1,788,466	-				+0.3
1,788,492	+				+0.2
1,788,530	+				-0.0
1,788,531	-				+0.3
1,788,531	-				-1.0
1,788,531	-				+0.5
1,788,629	+				+0.6
1,788,632	-				-0.8
1,788,651	+				-2.2
1,788,652	-				-0.9
1,788,653	+				-1.0
1,788,654	-				-0.1
1,788,654	-				-1.1
1,788,661	+				-0.5
1,788,661	+				-0.6
1,788,661	+				-0.5
1,788,662	-				-1.0
1,788,662	-				-0.2
1,788,663	+				-2.3
1,788,668	+				-1.1
1,788,683	+				-0.9
1,788,727	+				-0.8
1,788,787	-		HER17_RS08090	0.16	-0.6
1,788,816	-		HER17_RS08090	0.19	-1.6
1,788,816	-		HER17_RS08090	0.19	-1.0
1,788,824	+		HER17_RS08090	0.20	-0.7
1,788,851	-		HER17_RS08090	0.23	-0.3
1,788,851	-		HER17_RS08090	0.23	+1.1
1,788,856	-		HER17_RS08090	0.24	-0.5
1,788,865	+		HER17_RS08090	0.25	-0.4
1,788,865	+		HER17_RS08090	0.25	-0.3
1,788,865	+		HER17_RS08090	0.25	-0.6
1,788,866	-		HER17_RS08090	0.25	+0.5
1,788,866	-		HER17_RS08090	0.25	-0.9
1,788,866	-		HER17_RS08090	0.25	-0.8
1,788,866	-		HER17_RS08090	0.25	-0.5
1,788,866	-		HER17_RS08090	0.25	-0.0
1,788,868	-		HER17_RS08090	0.25	-0.2
1,788,884	+		HER17_RS08090	0.27	-0.1
1,788,884	+		HER17_RS08090	0.27	-0.4
1,788,884	+		HER17_RS08090	0.27	-0.9
1,788,884	+		HER17_RS08090	0.27	-1.3
1,788,885	-		HER17_RS08090	0.27	-1.1
1,788,980	-		HER17_RS08090	0.38	-0.5
1,789,018	-		HER17_RS08090	0.42	-0.4
1,789,210	+		HER17_RS08090	0.64	-0.1
1,789,210	+		HER17_RS08090	0.64	+0.2
1,789,211	-		HER17_RS08090	0.64	-1.1
1,789,283	+		HER17_RS08090	0.72	-2.6