Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS06500

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS06495 and HER17_RS06500 are separated by 91 nucleotidesHER17_RS06500 and HER17_RS06505 are separated by 36 nucleotides HER17_RS06495: HER17_RS06495 - cysteine--tRNA ligase, at 1,445,906 to 1,447,291 _RS06495 HER17_RS06500: HER17_RS06500 - ribosome-associated protein YbcJ, at 1,447,383 to 1,447,595 _RS06500 HER17_RS06505: HER17_RS06505 - bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD, at 1,447,632 to 1,448,495 _RS06505 Position (kb) 1447 1448Strain fitness (log2 ratio) -1 0 1at 1447.306 kb on - strandat 1447.308 kb on + strandat 1447.309 kb on - strandat 1447.385 kb on - strandat 1447.399 kb on - strandat 1447.545 kb on + strand, within HER17_RS06500at 1447.545 kb on + strand, within HER17_RS06500at 1447.546 kb on - strand, within HER17_RS06500at 1447.546 kb on - strand, within HER17_RS06500at 1447.596 kb on - strandat 1448.582 kb on - strandat 1448.584 kb on + strandat 1448.584 kb on + strandat 1448.585 kb on - strandat 1448.590 kb on + strandat 1448.590 kb on + strandat 1448.590 kb on + strandat 1448.591 kb on - strandat 1448.591 kb on - strandat 1448.591 kb on - strandat 1448.591 kb on - strandat 1448.594 kb on + strandat 1448.594 kb on + strandat 1448.594 kb on + strandat 1448.594 kb on + strandat 1448.594 kb on + strandat 1448.595 kb on - strandat 1448.595 kb on - strandat 1448.595 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,447,306 - -0.4
1,447,308 + +0.4
1,447,309 - +0.0
1,447,385 - +0.8
1,447,399 - +0.5
1,447,545 + HER17_RS06500 0.76 +0.5
1,447,545 + HER17_RS06500 0.76 +0.0
1,447,546 - HER17_RS06500 0.77 +0.0
1,447,546 - HER17_RS06500 0.77 +0.9
1,447,596 - -0.4
1,448,582 - +0.0
1,448,584 + +0.7
1,448,584 + -0.8
1,448,585 - +0.1
1,448,590 + +0.7
1,448,590 + -0.0
1,448,590 + +0.2
1,448,591 - +0.1
1,448,591 - +0.1
1,448,591 - +0.1
1,448,591 - +0.4
1,448,594 + +0.2
1,448,594 + +0.4
1,448,594 + +0.7
1,448,594 + +0.9
1,448,594 + +0.1
1,448,595 - +0.4
1,448,595 - -0.2
1,448,595 - +0.2

Or see this region's nucleotide sequence