Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS06360

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,412,869	-				-0.1
1,412,927	+				+0.2
1,412,950	+				-0.2
1,412,963	+				-0.7
1,412,968	-				+0.0
1,412,968	-				+0.2
1,412,968	-				-0.3
1,412,968	-				+0.1
1,412,981	+				+0.7
1,412,982	-				+0.8
1,412,982	-				-0.2
1,412,984	+				-0.5
1,412,984	+				-0.3
1,412,984	+				-1.5
1,413,023	+				+0.3
1,413,024	-				+0.5
1,413,024	-				+0.0
1,413,087	-		HER17_RS06355	0.12	+0.4
1,413,087	-		HER17_RS06355	0.12	-0.4
1,413,096	-		HER17_RS06355	0.13	+0.6
1,413,096	-		HER17_RS06355	0.13	+0.3
1,413,128	+		HER17_RS06355	0.17	+0.6
1,413,129	-		HER17_RS06355	0.17	-0.3
1,413,149	+		HER17_RS06355	0.20	+0.9
1,413,150	-		HER17_RS06355	0.20	-0.0
1,413,150	-		HER17_RS06355	0.20	-0.4
1,413,255	+		HER17_RS06355	0.32	+0.3
1,413,256	-		HER17_RS06355	0.32	+0.4
1,413,256	-		HER17_RS06355	0.32	-1.4
1,413,283	-		HER17_RS06355	0.35	+0.1
1,413,339	-		HER17_RS06355	0.42	+0.3
1,413,353	+		HER17_RS06355	0.44	+0.2
1,413,354	-		HER17_RS06355	0.44	+0.9
1,413,354	-		HER17_RS06355	0.44	+0.8
1,413,354	-		HER17_RS06355	0.44	+0.6
1,413,357	+		HER17_RS06355	0.44	-0.6
1,413,357	+		HER17_RS06355	0.44	-0.1
1,413,357	+		HER17_RS06355	0.44	+0.2
1,413,357	+		HER17_RS06355	0.44	+0.1
1,413,357	+		HER17_RS06355	0.44	+0.0
1,413,357	+		HER17_RS06355	0.44	-0.2
1,413,358	-		HER17_RS06355	0.44	-0.2
1,413,358	-		HER17_RS06355	0.44	+1.7
1,413,358	-		HER17_RS06355	0.44	-0.5
1,413,358	-		HER17_RS06355	0.44	-0.3
1,413,358	-		HER17_RS06355	0.44	+0.2
1,413,358	-		HER17_RS06355	0.44	-0.3
1,413,358	-		HER17_RS06355	0.44	-0.7
1,413,402	+		HER17_RS06355	0.49	+0.2
1,413,403	-		HER17_RS06355	0.49	+0.8
1,413,403	-		HER17_RS06355	0.49	-0.7
1,413,436	+		HER17_RS06355	0.53	+0.2
1,413,484	+		HER17_RS06355	0.59	-0.4
1,413,539	+		HER17_RS06355	0.65	-0.2
1,413,651	-		HER17_RS06355	0.79	+0.5
1,413,657	+		HER17_RS06355	0.79	+1.2
1,413,657	+		HER17_RS06355	0.79	+0.1
1,413,669	+		HER17_RS06355	0.81	+0.0
1,413,669	+		HER17_RS06355	0.81	-0.1
1,413,670	-		HER17_RS06355	0.81	-0.1
1,413,744	-		HER17_RS06355	0.90	-0.9
1,413,748	-				-0.3
1,413,748	-				+0.4
1,413,748	-				+0.2
1,413,748	-				+0.3
1,413,748	-				+0.1
1,413,779	+				-0.5
1,413,779	+				-0.6
1,413,779	+				+0.8
1,413,779	+				+0.2
1,413,779	+				+0.2
1,413,780	-				-0.9
1,413,780	-				+0.2
1,413,780	-				+0.7
1,413,813	+				-0.0
1,413,846	-				-0.8
1,413,976	-		HER17_RS06360	0.10	+0.2
1,413,976	-		HER17_RS06360	0.10	+1.2
1,414,052	+		HER17_RS06360	0.16	-0.2
1,414,052	+		HER17_RS06360	0.16	+0.1
1,414,085	+		HER17_RS06360	0.18	-1.1
1,414,151	+		HER17_RS06360	0.23	+0.3
1,414,213	+		HER17_RS06360	0.28	-0.6
1,414,214	-		HER17_RS06360	0.28	-1.3
1,414,214	-		HER17_RS06360	0.28	-0.4
1,414,214	-		HER17_RS06360	0.28	+1.3
1,414,234	+		HER17_RS06360	0.30	+0.0
1,414,235	-		HER17_RS06360	0.30	+0.3
1,414,312	-		HER17_RS06360	0.36	+0.2
1,414,312	-		HER17_RS06360	0.36	-0.2
1,414,348	-		HER17_RS06360	0.38	+0.3
1,414,369	-		HER17_RS06360	0.40	+0.0
1,414,392	+		HER17_RS06360	0.42	-0.1
1,414,393	-		HER17_RS06360	0.42	+0.2
1,414,597	-		HER17_RS06360	0.57	-0.4
1,414,742	+		HER17_RS06360	0.68	+1.5
1,414,772	+		HER17_RS06360	0.70	+0.3
1,414,829	+		HER17_RS06360	0.75	+0.4
1,414,829	+		HER17_RS06360	0.75	-0.0
1,414,829	+		HER17_RS06360	0.75	-0.6
1,414,829	+		HER17_RS06360	0.75	+0.5
1,414,830	-		HER17_RS06360	0.75	+0.4
1,414,850	+		HER17_RS06360	0.76	-0.3
1,414,851	-		HER17_RS06360	0.76	-0.3
1,414,854	-		HER17_RS06360	0.77	-1.1
1,414,890	+		HER17_RS06360	0.79	-0.5
1,414,987	+		HER17_RS06360	0.87	+0.1
1,414,987	+		HER17_RS06360	0.87	+0.2
1,415,048	+				+0.9
1,415,048	+				+0.6
1,415,048	+				-0.1
1,415,049	-				-0.1
1,415,083	+				-0.8
1,415,083	+				+0.2
1,415,083	+				+0.2
1,415,083	+				+0.2
1,415,084	-				+0.3
1,415,152	+				-0.5
1,415,153	-				-0.5
1,415,212	+				-0.1
1,415,213	-				+0.0
1,415,213	-				+0.4
1,415,251	-				+0.3
1,415,257	+				+0.1
1,415,401	+		HER17_RS06365	0.12	+0.0
1,415,455	+		HER17_RS06365	0.17	-0.5
1,415,526	+		HER17_RS06365	0.22	-0.4
1,415,583	+		HER17_RS06365	0.27	-0.3
1,415,673	-		HER17_RS06365	0.34	+0.6
1,415,688	+		HER17_RS06365	0.36	+0.4
1,415,688	+		HER17_RS06365	0.36	+0.1
1,415,688	+		HER17_RS06365	0.36	-0.1
1,415,808	+		HER17_RS06365	0.45	+0.2
1,415,808	+		HER17_RS06365	0.45	-0.0
1,415,809	-		HER17_RS06365	0.45	+0.3
1,415,824	-		HER17_RS06365	0.47	-0.3
1,415,824	-		HER17_RS06365	0.47	-0.4
1,415,824	-		HER17_RS06365	0.47	+0.2
1,415,824	-		HER17_RS06365	0.47	-0.1
1,415,871	-		HER17_RS06365	0.50	+1.6
1,415,871	-		HER17_RS06365	0.50	-0.2
1,415,935	-		HER17_RS06365	0.56	-0.6
1,415,941	-		HER17_RS06365	0.56	-0.4
1,416,103	+		HER17_RS06365	0.69	-0.7
1,416,111	+		HER17_RS06365	0.70	-1.2
1,416,112	-		HER17_RS06365	0.70	-0.3