Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS04235 and HER17_RS04240 overlap by 1 nucleotides HER17_RS04240 and HER17_RS04245 are separated by 12 nucleotides
HER17_RS04235: HER17_RS04235 - NADPH-dependent assimilatory sulfite reductase flavoprotein subunit, at 967,842 to 969,671
_RS04235
HER17_RS04240: HER17_RS04240 - assimilatory sulfite reductase (NADPH) hemoprotein subunit, at 969,671 to 971,404
_RS04240
HER17_RS04245: HER17_RS04245 - phosphoadenylyl-sulfate reductase, at 971,417 to 972,151
_RS04245
Position (kb) 969
970
971
972 Strain fitness (log2 ratio) -2
-1
0
1 at 968.865 kb on + strand, within HER17_RS04235 at 968.865 kb on + strand, within HER17_RS04235 at 968.866 kb on - strand, within HER17_RS04235 at 968.958 kb on - strand, within HER17_RS04235 at 969.033 kb on + strand, within HER17_RS04235 at 969.034 kb on - strand, within HER17_RS04235 at 969.039 kb on - strand, within HER17_RS04235 at 969.106 kb on - strand, within HER17_RS04235 at 969.106 kb on - strand, within HER17_RS04235 at 969.142 kb on - strand, within HER17_RS04235 at 969.201 kb on - strand, within HER17_RS04235 at 969.281 kb on + strand, within HER17_RS04235 at 969.281 kb on + strand, within HER17_RS04235 at 969.336 kb on - strand, within HER17_RS04235 at 969.347 kb on + strand, within HER17_RS04235 at 969.384 kb on + strand, within HER17_RS04235 at 969.385 kb on - strand, within HER17_RS04235 at 969.450 kb on + strand, within HER17_RS04235 at 969.451 kb on - strand, within HER17_RS04235 at 969.519 kb on + strand at 969.519 kb on + strand at 969.519 kb on + strand at 969.520 kb on - strand at 969.520 kb on - strand at 969.520 kb on - strand at 969.520 kb on - strand at 969.520 kb on - strand at 969.520 kb on - strand at 969.520 kb on - strand at 969.520 kb on - strand at 969.520 kb on - strand at 969.542 kb on + strand at 969.580 kb on + strand at 969.580 kb on + strand at 969.580 kb on + strand at 969.652 kb on - strand at 969.666 kb on + strand at 969.666 kb on + strand at 969.666 kb on + strand at 969.666 kb on + strand at 969.666 kb on + strand at 969.667 kb on - strand at 969.667 kb on - strand at 969.667 kb on - strand at 969.667 kb on - strand at 969.684 kb on - strand at 969.720 kb on + strand at 969.720 kb on + strand at 969.721 kb on - strand at 969.721 kb on - strand at 969.840 kb on + strand at 969.856 kb on + strand, within HER17_RS04240 at 969.856 kb on + strand, within HER17_RS04240 at 969.857 kb on - strand, within HER17_RS04240 at 969.860 kb on + strand, within HER17_RS04240 at 969.860 kb on + strand, within HER17_RS04240 at 969.861 kb on - strand, within HER17_RS04240 at 970.014 kb on - strand, within HER17_RS04240 at 970.014 kb on - strand, within HER17_RS04240 at 970.018 kb on + strand, within HER17_RS04240 at 970.053 kb on - strand, within HER17_RS04240 at 970.102 kb on + strand, within HER17_RS04240 at 970.102 kb on + strand, within HER17_RS04240 at 970.103 kb on - strand, within HER17_RS04240 at 970.103 kb on - strand, within HER17_RS04240 at 970.103 kb on - strand, within HER17_RS04240 at 970.159 kb on + strand, within HER17_RS04240 at 970.160 kb on - strand, within HER17_RS04240 at 970.160 kb on - strand, within HER17_RS04240 at 970.160 kb on - strand, within HER17_RS04240 at 970.199 kb on + strand, within HER17_RS04240 at 970.199 kb on + strand, within HER17_RS04240 at 970.199 kb on + strand, within HER17_RS04240 at 970.200 kb on - strand, within HER17_RS04240 at 970.250 kb on + strand, within HER17_RS04240 at 970.251 kb on - strand, within HER17_RS04240 at 970.319 kb on + strand, within HER17_RS04240 at 970.319 kb on + strand, within HER17_RS04240 at 970.320 kb on - strand, within HER17_RS04240 at 970.320 kb on - strand, within HER17_RS04240 at 970.514 kb on + strand, within HER17_RS04240 at 970.514 kb on + strand, within HER17_RS04240 at 970.515 kb on - strand, within HER17_RS04240 at 970.532 kb on - strand, within HER17_RS04240 at 970.595 kb on - strand, within HER17_RS04240 at 970.750 kb on + strand, within HER17_RS04240 at 970.751 kb on - strand, within HER17_RS04240 at 970.751 kb on - strand, within HER17_RS04240 at 970.906 kb on + strand, within HER17_RS04240 at 970.906 kb on + strand, within HER17_RS04240 at 970.907 kb on - strand, within HER17_RS04240 at 970.975 kb on + strand, within HER17_RS04240 at 970.975 kb on + strand, within HER17_RS04240 at 971.104 kb on + strand, within HER17_RS04240 at 971.105 kb on - strand, within HER17_RS04240 at 971.192 kb on + strand, within HER17_RS04240 at 971.192 kb on + strand, within HER17_RS04240 at 971.194 kb on + strand, within HER17_RS04240 at 971.195 kb on - strand, within HER17_RS04240 at 971.195 kb on - strand, within HER17_RS04240 at 971.195 kb on - strand, within HER17_RS04240 at 971.195 kb on - strand, within HER17_RS04240 at 971.239 kb on + strand at 971.239 kb on + strand at 971.239 kb on + strand at 971.239 kb on + strand at 971.239 kb on + strand at 971.240 kb on - strand at 971.243 kb on + strand at 971.243 kb on + strand at 971.362 kb on + strand at 971.362 kb on + strand at 971.363 kb on - strand at 971.363 kb on - strand at 971.365 kb on + strand at 971.365 kb on + strand at 971.429 kb on - strand at 971.488 kb on - strand at 971.488 kb on - strand at 971.558 kb on + strand, within HER17_RS04245 at 971.630 kb on - strand, within HER17_RS04245 at 971.630 kb on - strand, within HER17_RS04245 at 971.638 kb on + strand, within HER17_RS04245 at 971.639 kb on - strand, within HER17_RS04245 at 971.639 kb on - strand, within HER17_RS04245 at 971.684 kb on - strand, within HER17_RS04245 at 971.684 kb on - strand, within HER17_RS04245 at 971.684 kb on - strand, within HER17_RS04245 at 971.707 kb on - strand, within HER17_RS04245 at 971.807 kb on + strand, within HER17_RS04245 at 971.821 kb on + strand, within HER17_RS04245 at 971.857 kb on - strand, within HER17_RS04245 at 971.917 kb on - strand, within HER17_RS04245 at 971.917 kb on - strand, within HER17_RS04245 at 971.987 kb on + strand, within HER17_RS04245 at 971.987 kb on + strand, within HER17_RS04245 at 971.988 kb on - strand, within HER17_RS04245 at 971.994 kb on - strand, within HER17_RS04245 at 971.994 kb on - strand, within HER17_RS04245 at 972.017 kb on + strand, within HER17_RS04245 at 972.017 kb on + strand, within HER17_RS04245 at 972.041 kb on + strand, within HER17_RS04245 at 972.216 kb on - strand at 972.218 kb on - strand at 972.218 kb on - strand at 972.218 kb on - strand at 972.218 kb on - strand at 972.218 kb on - strand at 972.241 kb on + strand at 972.280 kb on + strand at 972.300 kb on + strand at 972.301 kb on - strand at 972.301 kb on - strand at 972.341 kb on + strand at 972.389 kb on - strand at 972.389 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 968,865 + HER17_RS04235 0.56 +1.5 968,865 + HER17_RS04235 0.56 +0.6 968,866 - HER17_RS04235 0.56 -1.5 968,958 - HER17_RS04235 0.61 +0.6 969,033 + HER17_RS04235 0.65 -0.8 969,034 - HER17_RS04235 0.65 +0.1 969,039 - HER17_RS04235 0.65 -0.3 969,106 - HER17_RS04235 0.69 -1.5 969,106 - HER17_RS04235 0.69 +0.0 969,142 - HER17_RS04235 0.71 +0.2 969,201 - HER17_RS04235 0.74 +1.1 969,281 + HER17_RS04235 0.79 -0.2 969,281 + HER17_RS04235 0.79 +0.4 969,336 - HER17_RS04235 0.82 -1.1 969,347 + HER17_RS04235 0.82 +0.6 969,384 + HER17_RS04235 0.84 +0.5 969,385 - HER17_RS04235 0.84 -0.0 969,450 + HER17_RS04235 0.88 +0.0 969,451 - HER17_RS04235 0.88 -0.1 969,519 + -0.7 969,519 + -2.2 969,519 + +0.7 969,520 - +0.4 969,520 - +0.3 969,520 - +0.8 969,520 - -0.4 969,520 - -0.0 969,520 - +0.7 969,520 - -0.2 969,520 - -0.0 969,520 - -0.0 969,542 + -0.5 969,580 + +0.5 969,580 + -0.2 969,580 + -0.3 969,652 - -0.5 969,666 + -0.1 969,666 + -0.1 969,666 + +0.9 969,666 + -0.2 969,666 + -0.9 969,667 - -1.2 969,667 - +0.3 969,667 - +0.3 969,667 - -0.3 969,684 - +0.4 969,720 + +0.0 969,720 + +0.6 969,721 - +0.4 969,721 - +0.4 969,840 + +0.1 969,856 + HER17_RS04240 0.11 +0.6 969,856 + HER17_RS04240 0.11 +0.1 969,857 - HER17_RS04240 0.11 +0.2 969,860 + HER17_RS04240 0.11 -0.7 969,860 + HER17_RS04240 0.11 +1.0 969,861 - HER17_RS04240 0.11 -0.3 970,014 - HER17_RS04240 0.20 +0.2 970,014 - HER17_RS04240 0.20 -0.7 970,018 + HER17_RS04240 0.20 -0.9 970,053 - HER17_RS04240 0.22 +0.2 970,102 + HER17_RS04240 0.25 -1.3 970,102 + HER17_RS04240 0.25 +0.5 970,103 - HER17_RS04240 0.25 +0.4 970,103 - HER17_RS04240 0.25 -0.3 970,103 - HER17_RS04240 0.25 +1.4 970,159 + HER17_RS04240 0.28 +0.5 970,160 - HER17_RS04240 0.28 -0.2 970,160 - HER17_RS04240 0.28 +0.5 970,160 - HER17_RS04240 0.28 -1.1 970,199 + HER17_RS04240 0.30 -0.8 970,199 + HER17_RS04240 0.30 +0.9 970,199 + HER17_RS04240 0.30 +1.0 970,200 - HER17_RS04240 0.31 -1.0 970,250 + HER17_RS04240 0.33 +0.6 970,251 - HER17_RS04240 0.33 +0.2 970,319 + HER17_RS04240 0.37 +0.6 970,319 + HER17_RS04240 0.37 +0.4 970,320 - HER17_RS04240 0.37 +0.9 970,320 - HER17_RS04240 0.37 -0.6 970,514 + HER17_RS04240 0.49 -0.8 970,514 + HER17_RS04240 0.49 +0.2 970,515 - HER17_RS04240 0.49 -1.1 970,532 - HER17_RS04240 0.50 -0.6 970,595 - HER17_RS04240 0.53 +0.5 970,750 + HER17_RS04240 0.62 -0.2 970,751 - HER17_RS04240 0.62 +0.6 970,751 - HER17_RS04240 0.62 -0.5 970,906 + HER17_RS04240 0.71 -0.9 970,906 + HER17_RS04240 0.71 -0.2 970,907 - HER17_RS04240 0.71 -1.1 970,975 + HER17_RS04240 0.75 +0.2 970,975 + HER17_RS04240 0.75 +0.3 971,104 + HER17_RS04240 0.83 -1.0 971,105 - HER17_RS04240 0.83 -1.5 971,192 + HER17_RS04240 0.88 -0.5 971,192 + HER17_RS04240 0.88 -0.5 971,194 + HER17_RS04240 0.88 -1.0 971,195 - HER17_RS04240 0.88 -0.1 971,195 - HER17_RS04240 0.88 -0.5 971,195 - HER17_RS04240 0.88 +0.0 971,195 - HER17_RS04240 0.88 +0.6 971,239 + -0.3 971,239 + +0.4 971,239 + +0.1 971,239 + -0.2 971,239 + -0.1 971,240 - +0.3 971,243 + -0.5 971,243 + -0.1 971,362 + +0.1 971,362 + -0.3 971,363 - -1.1 971,363 - +0.3 971,365 + -0.3 971,365 + +0.1 971,429 - -0.1 971,488 - -1.3 971,488 - -0.1 971,558 + HER17_RS04245 0.19 -0.2 971,630 - HER17_RS04245 0.29 -0.5 971,630 - HER17_RS04245 0.29 +0.6 971,638 + HER17_RS04245 0.30 -0.0 971,639 - HER17_RS04245 0.30 +0.9 971,639 - HER17_RS04245 0.30 -0.1 971,684 - HER17_RS04245 0.36 +1.1 971,684 - HER17_RS04245 0.36 +0.3 971,684 - HER17_RS04245 0.36 +1.6 971,707 - HER17_RS04245 0.39 -0.3 971,807 + HER17_RS04245 0.53 -1.0 971,821 + HER17_RS04245 0.55 +0.1 971,857 - HER17_RS04245 0.60 -0.9 971,917 - HER17_RS04245 0.68 +0.1 971,917 - HER17_RS04245 0.68 -0.3 971,987 + HER17_RS04245 0.78 -0.2 971,987 + HER17_RS04245 0.78 -0.4 971,988 - HER17_RS04245 0.78 +0.6 971,994 - HER17_RS04245 0.79 +0.8 971,994 - HER17_RS04245 0.79 +0.1 972,017 + HER17_RS04245 0.82 +0.0 972,017 + HER17_RS04245 0.82 +0.4 972,041 + HER17_RS04245 0.85 -0.5 972,216 - +0.3 972,218 - +0.1 972,218 - +0.9 972,218 - -0.7 972,218 - +0.1 972,218 - +0.0 972,241 + -0.3 972,280 + +0.4 972,300 + -0.4 972,301 - +0.4 972,301 - -0.4 972,341 + -0.0 972,389 - +0.1 972,389 - +0.5
Or see this region's nucleotide sequence