Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS03400 and HER17_RS03405 are separated by 11 nucleotides HER17_RS03405 and HER17_RS03410 are separated by 85 nucleotides HER17_RS03410 and HER17_RS03415 are separated by 89 nucleotides
HER17_RS03400: HER17_RS03400 - multidrug efflux SMR transporter, at 773,642 to 773,968
_RS03400
HER17_RS03405: HER17_RS03405 - multidrug efflux SMR transporter, at 773,980 to 774,402
_RS03405
HER17_RS03410: HER17_RS03410 - choline TMA-lyase-activating enzyme, at 774,488 to 775,438
_RS03410
HER17_RS03415: HER17_RS03415 - choline trimethylamine-lyase, at 775,528 to 777,903
_RS03415
Position (kb) 774
775
776 Strain fitness (log2 ratio) -1
0
1
2 at 773.540 kb on - strand at 773.558 kb on - strand at 773.577 kb on - strand at 773.602 kb on + strand at 773.641 kb on - strand at 773.643 kb on + strand at 773.643 kb on + strand at 773.643 kb on + strand at 773.643 kb on + strand at 773.643 kb on + strand at 773.647 kb on + strand at 773.647 kb on + strand at 773.648 kb on - strand at 773.688 kb on - strand, within HER17_RS03400 at 773.688 kb on - strand, within HER17_RS03400 at 773.688 kb on - strand, within HER17_RS03400 at 773.781 kb on - strand, within HER17_RS03400 at 773.808 kb on + strand, within HER17_RS03400 at 773.885 kb on - strand, within HER17_RS03400 at 773.981 kb on + strand at 773.982 kb on - strand at 774.008 kb on - strand at 774.156 kb on + strand, within HER17_RS03405 at 774.274 kb on - strand, within HER17_RS03405 at 774.334 kb on - strand, within HER17_RS03405 at 774.334 kb on - strand, within HER17_RS03405 at 774.364 kb on + strand at 774.365 kb on - strand at 774.367 kb on + strand at 774.367 kb on + strand at 774.367 kb on + strand at 774.402 kb on + strand at 774.402 kb on + strand at 774.403 kb on - strand at 774.405 kb on + strand at 774.405 kb on + strand at 774.405 kb on + strand at 774.406 kb on - strand at 774.406 kb on - strand at 774.419 kb on + strand at 774.420 kb on - strand at 774.420 kb on - strand at 774.463 kb on - strand at 774.470 kb on - strand at 774.476 kb on - strand at 774.477 kb on + strand at 774.477 kb on + strand at 774.478 kb on - strand at 774.478 kb on - strand at 774.565 kb on - strand at 774.565 kb on - strand at 774.589 kb on - strand, within HER17_RS03410 at 774.623 kb on + strand, within HER17_RS03410 at 774.634 kb on - strand, within HER17_RS03410 at 774.641 kb on + strand, within HER17_RS03410 at 774.641 kb on + strand, within HER17_RS03410 at 774.642 kb on - strand, within HER17_RS03410 at 774.656 kb on + strand, within HER17_RS03410 at 774.656 kb on + strand, within HER17_RS03410 at 774.656 kb on + strand, within HER17_RS03410 at 774.657 kb on - strand, within HER17_RS03410 at 774.657 kb on - strand, within HER17_RS03410 at 774.657 kb on - strand, within HER17_RS03410 at 774.658 kb on + strand, within HER17_RS03410 at 774.658 kb on + strand, within HER17_RS03410 at 774.658 kb on + strand, within HER17_RS03410 at 774.659 kb on - strand, within HER17_RS03410 at 774.659 kb on - strand, within HER17_RS03410 at 774.687 kb on + strand, within HER17_RS03410 at 774.687 kb on + strand, within HER17_RS03410 at 774.687 kb on + strand, within HER17_RS03410 at 774.746 kb on - strand, within HER17_RS03410 at 774.799 kb on + strand, within HER17_RS03410 at 774.800 kb on - strand, within HER17_RS03410 at 774.897 kb on + strand, within HER17_RS03410 at 774.937 kb on + strand, within HER17_RS03410 at 774.938 kb on - strand, within HER17_RS03410 at 774.941 kb on - strand, within HER17_RS03410 at 774.941 kb on - strand, within HER17_RS03410 at 774.993 kb on - strand, within HER17_RS03410 at 775.041 kb on + strand, within HER17_RS03410 at 775.041 kb on + strand, within HER17_RS03410 at 775.041 kb on + strand, within HER17_RS03410 at 775.041 kb on + strand, within HER17_RS03410 at 775.041 kb on + strand, within HER17_RS03410 at 775.042 kb on - strand, within HER17_RS03410 at 775.042 kb on - strand, within HER17_RS03410 at 775.042 kb on - strand, within HER17_RS03410 at 775.100 kb on + strand, within HER17_RS03410 at 775.100 kb on + strand, within HER17_RS03410 at 775.100 kb on + strand, within HER17_RS03410 at 775.101 kb on - strand, within HER17_RS03410 at 775.264 kb on + strand, within HER17_RS03410 at 775.264 kb on + strand, within HER17_RS03410 at 775.265 kb on - strand, within HER17_RS03410 at 775.334 kb on - strand, within HER17_RS03410 at 775.348 kb on + strand at 775.462 kb on + strand at 775.462 kb on + strand at 775.462 kb on + strand at 775.462 kb on + strand at 775.462 kb on + strand at 775.462 kb on + strand at 775.463 kb on - strand at 775.463 kb on - strand at 775.463 kb on - strand at 775.463 kb on - strand at 775.499 kb on + strand at 775.546 kb on - strand at 775.579 kb on - strand at 775.579 kb on - strand at 775.582 kb on + strand at 775.582 kb on + strand at 775.605 kb on - strand at 775.605 kb on - strand at 775.666 kb on + strand at 775.682 kb on + strand at 775.682 kb on + strand at 775.791 kb on + strand, within HER17_RS03415 at 775.792 kb on - strand, within HER17_RS03415 at 775.800 kb on + strand, within HER17_RS03415 at 775.890 kb on + strand, within HER17_RS03415 at 775.890 kb on + strand, within HER17_RS03415 at 775.891 kb on - strand, within HER17_RS03415 at 775.891 kb on - strand, within HER17_RS03415 at 775.989 kb on + strand, within HER17_RS03415 at 776.001 kb on - strand, within HER17_RS03415 at 776.001 kb on - strand, within HER17_RS03415 at 776.046 kb on + strand, within HER17_RS03415 at 776.087 kb on + strand, within HER17_RS03415 at 776.128 kb on - strand, within HER17_RS03415 at 776.190 kb on - strand, within HER17_RS03415 at 776.221 kb on + strand, within HER17_RS03415 at 776.221 kb on + strand, within HER17_RS03415 at 776.221 kb on + strand, within HER17_RS03415 at 776.221 kb on + strand, within HER17_RS03415 at 776.221 kb on + strand, within HER17_RS03415 at 776.221 kb on + strand, within HER17_RS03415 at 776.222 kb on - strand, within HER17_RS03415 at 776.222 kb on - strand, within HER17_RS03415 at 776.222 kb on - strand, within HER17_RS03415 at 776.225 kb on + strand, within HER17_RS03415 at 776.225 kb on + strand, within HER17_RS03415 at 776.225 kb on + strand, within HER17_RS03415 at 776.225 kb on + strand, within HER17_RS03415 at 776.225 kb on + strand, within HER17_RS03415 at 776.225 kb on + strand, within HER17_RS03415 at 776.225 kb on + strand, within HER17_RS03415 at 776.226 kb on - strand, within HER17_RS03415 at 776.226 kb on - strand, within HER17_RS03415 at 776.226 kb on - strand, within HER17_RS03415
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 773,540 - +0.5 773,558 - -0.9 773,577 - +0.6 773,602 + -0.4 773,641 - +0.9 773,643 + +0.1 773,643 + -0.1 773,643 + -0.3 773,643 + -0.6 773,643 + -0.4 773,647 + -0.2 773,647 + -0.3 773,648 - -0.1 773,688 - HER17_RS03400 0.14 +0.1 773,688 - HER17_RS03400 0.14 +0.1 773,688 - HER17_RS03400 0.14 +0.6 773,781 - HER17_RS03400 0.43 +1.1 773,808 + HER17_RS03400 0.51 -0.2 773,885 - HER17_RS03400 0.74 -0.1 773,981 + -0.3 773,982 - -0.3 774,008 - -0.3 774,156 + HER17_RS03405 0.42 -0.0 774,274 - HER17_RS03405 0.70 +0.2 774,334 - HER17_RS03405 0.84 -1.6 774,334 - HER17_RS03405 0.84 -0.1 774,364 + -0.6 774,365 - -0.2 774,367 + +0.1 774,367 + -1.4 774,367 + +0.4 774,402 + +0.0 774,402 + +0.3 774,403 - -1.1 774,405 + +0.3 774,405 + -0.3 774,405 + +0.5 774,406 - +0.1 774,406 - -0.5 774,419 + -1.3 774,420 - +0.0 774,420 - -1.3 774,463 - +0.0 774,470 - +0.1 774,476 - +0.6 774,477 + +0.1 774,477 + -0.7 774,478 - +0.0 774,478 - +0.8 774,565 - +1.8 774,565 - -0.7 774,589 - HER17_RS03410 0.11 +0.6 774,623 + HER17_RS03410 0.14 +0.0 774,634 - HER17_RS03410 0.15 +0.9 774,641 + HER17_RS03410 0.16 +0.3 774,641 + HER17_RS03410 0.16 -0.4 774,642 - HER17_RS03410 0.16 +0.5 774,656 + HER17_RS03410 0.18 +0.5 774,656 + HER17_RS03410 0.18 +0.0 774,656 + HER17_RS03410 0.18 +0.7 774,657 - HER17_RS03410 0.18 -0.5 774,657 - HER17_RS03410 0.18 +0.3 774,657 - HER17_RS03410 0.18 +0.7 774,658 + HER17_RS03410 0.18 -0.1 774,658 + HER17_RS03410 0.18 -0.2 774,658 + HER17_RS03410 0.18 -0.6 774,659 - HER17_RS03410 0.18 -0.6 774,659 - HER17_RS03410 0.18 -0.2 774,687 + HER17_RS03410 0.21 -0.8 774,687 + HER17_RS03410 0.21 +0.2 774,687 + HER17_RS03410 0.21 +0.0 774,746 - HER17_RS03410 0.27 -0.4 774,799 + HER17_RS03410 0.33 -0.1 774,800 - HER17_RS03410 0.33 +0.3 774,897 + HER17_RS03410 0.43 -0.5 774,937 + HER17_RS03410 0.47 -0.3 774,938 - HER17_RS03410 0.47 -0.1 774,941 - HER17_RS03410 0.48 +0.0 774,941 - HER17_RS03410 0.48 -0.6 774,993 - HER17_RS03410 0.53 +0.2 775,041 + HER17_RS03410 0.58 +0.3 775,041 + HER17_RS03410 0.58 +0.5 775,041 + HER17_RS03410 0.58 -0.3 775,041 + HER17_RS03410 0.58 -0.3 775,041 + HER17_RS03410 0.58 +0.1 775,042 - HER17_RS03410 0.58 -0.8 775,042 - HER17_RS03410 0.58 -1.2 775,042 - HER17_RS03410 0.58 +0.0 775,100 + HER17_RS03410 0.64 -0.0 775,100 + HER17_RS03410 0.64 -1.1 775,100 + HER17_RS03410 0.64 -0.4 775,101 - HER17_RS03410 0.64 -0.0 775,264 + HER17_RS03410 0.82 +0.7 775,264 + HER17_RS03410 0.82 -0.5 775,265 - HER17_RS03410 0.82 +0.3 775,334 - HER17_RS03410 0.89 +0.7 775,348 + +0.9 775,462 + +0.3 775,462 + +0.3 775,462 + +0.4 775,462 + +0.0 775,462 + -0.5 775,462 + -0.3 775,463 - +0.6 775,463 - +0.8 775,463 - +0.4 775,463 - -1.1 775,499 + +0.4 775,546 - -0.2 775,579 - -0.1 775,579 - -0.7 775,582 + +0.9 775,582 + +0.1 775,605 - +0.7 775,605 - +0.1 775,666 + +0.6 775,682 + -0.0 775,682 + -0.1 775,791 + HER17_RS03415 0.11 +0.6 775,792 - HER17_RS03415 0.11 +0.9 775,800 + HER17_RS03415 0.11 +0.3 775,890 + HER17_RS03415 0.15 -0.6 775,890 + HER17_RS03415 0.15 +0.7 775,891 - HER17_RS03415 0.15 -0.3 775,891 - HER17_RS03415 0.15 +0.4 775,989 + HER17_RS03415 0.19 +1.4 776,001 - HER17_RS03415 0.20 -0.1 776,001 - HER17_RS03415 0.20 -1.6 776,046 + HER17_RS03415 0.22 +0.0 776,087 + HER17_RS03415 0.24 -0.3 776,128 - HER17_RS03415 0.25 +0.9 776,190 - HER17_RS03415 0.28 +0.6 776,221 + HER17_RS03415 0.29 +0.5 776,221 + HER17_RS03415 0.29 -0.1 776,221 + HER17_RS03415 0.29 -0.5 776,221 + HER17_RS03415 0.29 +0.7 776,221 + HER17_RS03415 0.29 -0.6 776,221 + HER17_RS03415 0.29 -0.0 776,222 - HER17_RS03415 0.29 +0.7 776,222 - HER17_RS03415 0.29 +0.5 776,222 - HER17_RS03415 0.29 -0.4 776,225 + HER17_RS03415 0.29 -0.1 776,225 + HER17_RS03415 0.29 -0.3 776,225 + HER17_RS03415 0.29 -0.6 776,225 + HER17_RS03415 0.29 +0.5 776,225 + HER17_RS03415 0.29 +0.3 776,225 + HER17_RS03415 0.29 -0.8 776,225 + HER17_RS03415 0.29 -1.6 776,226 - HER17_RS03415 0.29 +0.9 776,226 - HER17_RS03415 0.29 +0.9 776,226 - HER17_RS03415 0.29 -0.3
Or see this region's nucleotide sequence