Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS02295 and HER17_RS02300 are separated by 48 nucleotides HER17_RS02300 and HER17_RS02305 are separated by 272 nucleotides
HER17_RS02295: HER17_RS02295 - isocitrate lyase, at 508,740 to 510,047
_RS02295
HER17_RS02300: HER17_RS02300 - bifunctional isocitrate dehydrogenase kinase/phosphatase, at 510,096 to 511,871
_RS02300
HER17_RS02305: HER17_RS02305 - glyoxylate bypass operon transcriptional repressor IclR, at 512,144 to 512,974
_RS02305
Position (kb) 510
511
512 Strain fitness (log2 ratio) -2
-1
0
1
2 at 509.174 kb on + strand, within HER17_RS02295 at 509.174 kb on + strand, within HER17_RS02295 at 509.175 kb on - strand, within HER17_RS02295 at 509.181 kb on + strand, within HER17_RS02295 at 509.181 kb on + strand, within HER17_RS02295 at 509.183 kb on + strand, within HER17_RS02295 at 509.183 kb on + strand, within HER17_RS02295 at 509.184 kb on - strand, within HER17_RS02295 at 509.184 kb on - strand, within HER17_RS02295 at 509.240 kb on + strand, within HER17_RS02295 at 509.241 kb on - strand, within HER17_RS02295 at 509.347 kb on + strand, within HER17_RS02295 at 509.347 kb on + strand, within HER17_RS02295 at 509.425 kb on + strand, within HER17_RS02295 at 509.426 kb on - strand, within HER17_RS02295 at 509.484 kb on + strand, within HER17_RS02295 at 509.484 kb on + strand, within HER17_RS02295 at 509.484 kb on + strand, within HER17_RS02295 at 509.485 kb on - strand, within HER17_RS02295 at 509.534 kb on + strand, within HER17_RS02295 at 509.577 kb on + strand, within HER17_RS02295 at 509.577 kb on + strand, within HER17_RS02295 at 509.577 kb on + strand, within HER17_RS02295 at 509.578 kb on - strand, within HER17_RS02295 at 509.586 kb on + strand, within HER17_RS02295 at 509.626 kb on + strand, within HER17_RS02295 at 509.688 kb on + strand, within HER17_RS02295 at 509.688 kb on + strand, within HER17_RS02295 at 509.689 kb on - strand, within HER17_RS02295 at 509.709 kb on - strand, within HER17_RS02295 at 509.709 kb on - strand, within HER17_RS02295 at 509.775 kb on + strand, within HER17_RS02295 at 509.848 kb on - strand, within HER17_RS02295 at 509.913 kb on - strand, within HER17_RS02295 at 509.922 kb on + strand at 509.924 kb on + strand at 509.962 kb on - strand at 509.969 kb on + strand at 510.156 kb on + strand at 510.245 kb on + strand at 510.253 kb on + strand at 510.253 kb on + strand at 510.253 kb on + strand at 510.254 kb on - strand at 510.254 kb on - strand at 510.255 kb on + strand at 510.255 kb on + strand at 510.256 kb on - strand at 510.256 kb on - strand at 510.296 kb on + strand, within HER17_RS02300 at 510.296 kb on + strand, within HER17_RS02300 at 510.296 kb on + strand, within HER17_RS02300 at 510.297 kb on - strand, within HER17_RS02300 at 510.297 kb on - strand, within HER17_RS02300 at 510.347 kb on + strand, within HER17_RS02300 at 510.347 kb on + strand, within HER17_RS02300 at 510.347 kb on + strand, within HER17_RS02300 at 510.347 kb on + strand, within HER17_RS02300 at 510.348 kb on - strand, within HER17_RS02300 at 510.348 kb on - strand, within HER17_RS02300 at 510.351 kb on + strand, within HER17_RS02300 at 510.351 kb on + strand, within HER17_RS02300 at 510.351 kb on + strand, within HER17_RS02300 at 510.351 kb on + strand, within HER17_RS02300 at 510.351 kb on + strand, within HER17_RS02300 at 510.351 kb on + strand, within HER17_RS02300 at 510.351 kb on + strand, within HER17_RS02300 at 510.351 kb on + strand, within HER17_RS02300 at 510.352 kb on - strand, within HER17_RS02300 at 510.352 kb on - strand, within HER17_RS02300 at 510.352 kb on - strand, within HER17_RS02300 at 510.362 kb on - strand, within HER17_RS02300 at 510.428 kb on + strand, within HER17_RS02300 at 510.618 kb on + strand, within HER17_RS02300 at 510.618 kb on + strand, within HER17_RS02300 at 510.619 kb on - strand, within HER17_RS02300 at 510.619 kb on - strand, within HER17_RS02300 at 510.619 kb on - strand, within HER17_RS02300 at 510.621 kb on - strand, within HER17_RS02300 at 510.630 kb on + strand, within HER17_RS02300 at 510.630 kb on + strand, within HER17_RS02300 at 510.630 kb on + strand, within HER17_RS02300 at 510.634 kb on + strand, within HER17_RS02300 at 510.635 kb on - strand, within HER17_RS02300 at 510.677 kb on - strand, within HER17_RS02300 at 510.797 kb on - strand, within HER17_RS02300 at 510.797 kb on - strand, within HER17_RS02300 at 510.797 kb on - strand, within HER17_RS02300 at 510.800 kb on + strand, within HER17_RS02300 at 510.807 kb on - strand, within HER17_RS02300 at 510.807 kb on - strand, within HER17_RS02300 at 510.873 kb on + strand, within HER17_RS02300 at 510.873 kb on + strand, within HER17_RS02300 at 510.873 kb on + strand, within HER17_RS02300 at 510.874 kb on - strand, within HER17_RS02300 at 510.874 kb on - strand, within HER17_RS02300 at 510.874 kb on - strand, within HER17_RS02300 at 510.974 kb on + strand, within HER17_RS02300 at 510.974 kb on + strand, within HER17_RS02300 at 510.975 kb on - strand, within HER17_RS02300 at 510.975 kb on - strand, within HER17_RS02300 at 510.975 kb on - strand, within HER17_RS02300 at 510.985 kb on - strand, within HER17_RS02300 at 511.005 kb on + strand, within HER17_RS02300 at 511.006 kb on - strand, within HER17_RS02300 at 511.031 kb on + strand, within HER17_RS02300 at 511.055 kb on + strand, within HER17_RS02300 at 511.055 kb on + strand, within HER17_RS02300 at 511.056 kb on - strand, within HER17_RS02300 at 511.073 kb on + strand, within HER17_RS02300 at 511.074 kb on - strand, within HER17_RS02300 at 511.164 kb on + strand, within HER17_RS02300 at 511.165 kb on - strand, within HER17_RS02300 at 511.165 kb on - strand, within HER17_RS02300 at 511.165 kb on - strand, within HER17_RS02300 at 511.219 kb on - strand, within HER17_RS02300 at 511.335 kb on + strand, within HER17_RS02300 at 511.335 kb on + strand, within HER17_RS02300 at 511.335 kb on + strand, within HER17_RS02300 at 511.335 kb on + strand, within HER17_RS02300 at 511.336 kb on - strand, within HER17_RS02300 at 511.336 kb on - strand, within HER17_RS02300 at 511.336 kb on - strand, within HER17_RS02300 at 511.337 kb on + strand, within HER17_RS02300 at 511.368 kb on + strand, within HER17_RS02300 at 511.369 kb on - strand, within HER17_RS02300 at 511.369 kb on - strand, within HER17_RS02300 at 511.471 kb on + strand, within HER17_RS02300 at 511.472 kb on - strand, within HER17_RS02300 at 511.515 kb on + strand, within HER17_RS02300 at 511.515 kb on + strand, within HER17_RS02300 at 511.516 kb on - strand, within HER17_RS02300 at 511.516 kb on - strand, within HER17_RS02300 at 511.521 kb on + strand, within HER17_RS02300 at 511.521 kb on + strand, within HER17_RS02300 at 511.521 kb on + strand, within HER17_RS02300 at 511.522 kb on - strand, within HER17_RS02300 at 511.522 kb on - strand, within HER17_RS02300 at 511.536 kb on + strand, within HER17_RS02300 at 511.536 kb on + strand, within HER17_RS02300 at 511.536 kb on + strand, within HER17_RS02300 at 511.536 kb on + strand, within HER17_RS02300 at 511.537 kb on - strand, within HER17_RS02300 at 511.537 kb on - strand, within HER17_RS02300 at 511.537 kb on - strand, within HER17_RS02300 at 511.550 kb on + strand, within HER17_RS02300 at 511.595 kb on - strand, within HER17_RS02300 at 511.611 kb on + strand, within HER17_RS02300 at 511.612 kb on - strand, within HER17_RS02300 at 511.726 kb on - strand at 511.738 kb on + strand at 511.749 kb on - strand at 511.776 kb on + strand at 511.777 kb on - strand at 511.777 kb on - strand at 511.777 kb on - strand at 511.824 kb on + strand at 511.824 kb on + strand at 511.824 kb on + strand at 511.824 kb on + strand at 511.825 kb on - strand at 511.825 kb on - strand at 511.825 kb on - strand at 511.825 kb on - strand at 511.829 kb on + strand at 511.829 kb on + strand at 511.829 kb on + strand at 511.829 kb on + strand at 511.829 kb on + strand at 511.829 kb on + strand at 511.832 kb on + strand at 511.832 kb on + strand at 511.833 kb on - strand at 511.833 kb on - strand at 512.001 kb on + strand at 512.024 kb on - strand at 512.068 kb on - strand at 512.084 kb on + strand at 512.085 kb on - strand at 512.090 kb on + strand at 512.091 kb on - strand at 512.091 kb on - strand at 512.094 kb on - strand at 512.094 kb on - strand at 512.094 kb on - strand at 512.094 kb on - strand at 512.124 kb on + strand at 512.125 kb on - strand at 512.287 kb on + strand, within HER17_RS02305 at 512.287 kb on + strand, within HER17_RS02305 at 512.407 kb on + strand, within HER17_RS02305 at 512.408 kb on - strand, within HER17_RS02305 at 512.408 kb on - strand, within HER17_RS02305 at 512.408 kb on - strand, within HER17_RS02305 at 512.459 kb on + strand, within HER17_RS02305 at 512.459 kb on + strand, within HER17_RS02305 at 512.459 kb on + strand, within HER17_RS02305 at 512.459 kb on + strand, within HER17_RS02305 at 512.545 kb on + strand, within HER17_RS02305 at 512.545 kb on + strand, within HER17_RS02305 at 512.545 kb on + strand, within HER17_RS02305 at 512.545 kb on + strand, within HER17_RS02305 at 512.578 kb on + strand, within HER17_RS02305 at 512.579 kb on - strand, within HER17_RS02305 at 512.579 kb on - strand, within HER17_RS02305 at 512.631 kb on - strand, within HER17_RS02305 at 512.639 kb on + strand, within HER17_RS02305 at 512.639 kb on + strand, within HER17_RS02305 at 512.640 kb on - strand, within HER17_RS02305 at 512.640 kb on - strand, within HER17_RS02305 at 512.640 kb on - strand, within HER17_RS02305 at 512.640 kb on - strand, within HER17_RS02305 at 512.857 kb on + strand, within HER17_RS02305 at 512.858 kb on - strand, within HER17_RS02305 at 512.859 kb on + strand, within HER17_RS02305 at 512.860 kb on - strand, within HER17_RS02305 at 512.860 kb on - strand, within HER17_RS02305 at 512.860 kb on - strand, within HER17_RS02305 at 512.860 kb on - strand, within HER17_RS02305 at 512.860 kb on - strand, within HER17_RS02305 at 512.860 kb on - strand, within HER17_RS02305
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 509,174 + HER17_RS02295 0.33 +0.5 509,174 + HER17_RS02295 0.33 -0.1 509,175 - HER17_RS02295 0.33 +0.6 509,181 + HER17_RS02295 0.34 +0.3 509,181 + HER17_RS02295 0.34 +0.4 509,183 + HER17_RS02295 0.34 +0.2 509,183 + HER17_RS02295 0.34 +0.5 509,184 - HER17_RS02295 0.34 +0.1 509,184 - HER17_RS02295 0.34 -0.1 509,240 + HER17_RS02295 0.38 -0.5 509,241 - HER17_RS02295 0.38 -0.2 509,347 + HER17_RS02295 0.46 +0.1 509,347 + HER17_RS02295 0.46 +0.3 509,425 + HER17_RS02295 0.52 +0.4 509,426 - HER17_RS02295 0.52 +0.2 509,484 + HER17_RS02295 0.57 +0.0 509,484 + HER17_RS02295 0.57 -0.5 509,484 + HER17_RS02295 0.57 -0.4 509,485 - HER17_RS02295 0.57 -0.3 509,534 + HER17_RS02295 0.61 -0.2 509,577 + HER17_RS02295 0.64 -0.7 509,577 + HER17_RS02295 0.64 -0.7 509,577 + HER17_RS02295 0.64 -0.6 509,578 - HER17_RS02295 0.64 -0.2 509,586 + HER17_RS02295 0.65 -0.8 509,626 + HER17_RS02295 0.68 -0.7 509,688 + HER17_RS02295 0.72 +0.7 509,688 + HER17_RS02295 0.72 +0.5 509,689 - HER17_RS02295 0.73 -0.9 509,709 - HER17_RS02295 0.74 +0.7 509,709 - HER17_RS02295 0.74 -0.6 509,775 + HER17_RS02295 0.79 -0.2 509,848 - HER17_RS02295 0.85 +1.7 509,913 - HER17_RS02295 0.90 +0.8 509,922 + +0.6 509,924 + +0.1 509,962 - -0.4 509,969 + +0.6 510,156 + +0.0 510,245 + +0.2 510,253 + -0.1 510,253 + -0.2 510,253 + +0.9 510,254 - -0.0 510,254 - -0.5 510,255 + +0.6 510,255 + -1.2 510,256 - +0.5 510,256 - +1.6 510,296 + HER17_RS02300 0.11 -0.0 510,296 + HER17_RS02300 0.11 -0.5 510,296 + HER17_RS02300 0.11 -0.0 510,297 - HER17_RS02300 0.11 -0.3 510,297 - HER17_RS02300 0.11 +0.7 510,347 + HER17_RS02300 0.14 +0.4 510,347 + HER17_RS02300 0.14 -0.3 510,347 + HER17_RS02300 0.14 -1.1 510,347 + HER17_RS02300 0.14 +1.2 510,348 - HER17_RS02300 0.14 -0.1 510,348 - HER17_RS02300 0.14 +0.3 510,351 + HER17_RS02300 0.14 +0.9 510,351 + HER17_RS02300 0.14 +0.6 510,351 + HER17_RS02300 0.14 -1.3 510,351 + HER17_RS02300 0.14 -0.1 510,351 + HER17_RS02300 0.14 +0.4 510,351 + HER17_RS02300 0.14 +0.4 510,351 + HER17_RS02300 0.14 +2.1 510,351 + HER17_RS02300 0.14 +0.4 510,352 - HER17_RS02300 0.14 -0.4 510,352 - HER17_RS02300 0.14 -0.1 510,352 - HER17_RS02300 0.14 -1.2 510,362 - HER17_RS02300 0.15 +1.0 510,428 + HER17_RS02300 0.19 +0.4 510,618 + HER17_RS02300 0.29 +0.6 510,618 + HER17_RS02300 0.29 -1.0 510,619 - HER17_RS02300 0.29 -2.7 510,619 - HER17_RS02300 0.29 -0.8 510,619 - HER17_RS02300 0.29 +0.4 510,621 - HER17_RS02300 0.30 +0.0 510,630 + HER17_RS02300 0.30 +0.2 510,630 + HER17_RS02300 0.30 -0.6 510,630 + HER17_RS02300 0.30 -0.2 510,634 + HER17_RS02300 0.30 -0.7 510,635 - HER17_RS02300 0.30 -1.7 510,677 - HER17_RS02300 0.33 +0.4 510,797 - HER17_RS02300 0.39 -1.4 510,797 - HER17_RS02300 0.39 +0.6 510,797 - HER17_RS02300 0.39 -2.7 510,800 + HER17_RS02300 0.40 -0.3 510,807 - HER17_RS02300 0.40 +1.3 510,807 - HER17_RS02300 0.40 -0.4 510,873 + HER17_RS02300 0.44 -1.1 510,873 + HER17_RS02300 0.44 +1.5 510,873 + HER17_RS02300 0.44 +0.8 510,874 - HER17_RS02300 0.44 -0.2 510,874 - HER17_RS02300 0.44 -0.3 510,874 - HER17_RS02300 0.44 -0.0 510,974 + HER17_RS02300 0.49 -1.0 510,974 + HER17_RS02300 0.49 +0.2 510,975 - HER17_RS02300 0.49 -1.0 510,975 - HER17_RS02300 0.49 +0.1 510,975 - HER17_RS02300 0.49 -0.1 510,985 - HER17_RS02300 0.50 -1.6 511,005 + HER17_RS02300 0.51 +0.0 511,006 - HER17_RS02300 0.51 +0.2 511,031 + HER17_RS02300 0.53 -0.1 511,055 + HER17_RS02300 0.54 +0.2 511,055 + HER17_RS02300 0.54 +1.4 511,056 - HER17_RS02300 0.54 +0.6 511,073 + HER17_RS02300 0.55 +0.1 511,074 - HER17_RS02300 0.55 +0.4 511,164 + HER17_RS02300 0.60 +0.6 511,165 - HER17_RS02300 0.60 +0.3 511,165 - HER17_RS02300 0.60 -1.1 511,165 - HER17_RS02300 0.60 -0.0 511,219 - HER17_RS02300 0.63 -0.4 511,335 + HER17_RS02300 0.70 -0.1 511,335 + HER17_RS02300 0.70 -0.2 511,335 + HER17_RS02300 0.70 -0.7 511,335 + HER17_RS02300 0.70 +0.2 511,336 - HER17_RS02300 0.70 +0.5 511,336 - HER17_RS02300 0.70 -0.1 511,336 - HER17_RS02300 0.70 +0.9 511,337 + HER17_RS02300 0.70 +0.2 511,368 + HER17_RS02300 0.72 +0.0 511,369 - HER17_RS02300 0.72 +0.5 511,369 - HER17_RS02300 0.72 +0.7 511,471 + HER17_RS02300 0.77 -0.1 511,472 - HER17_RS02300 0.77 +0.6 511,515 + HER17_RS02300 0.80 -0.7 511,515 + HER17_RS02300 0.80 -0.4 511,516 - HER17_RS02300 0.80 -0.8 511,516 - HER17_RS02300 0.80 +0.5 511,521 + HER17_RS02300 0.80 +0.6 511,521 + HER17_RS02300 0.80 -0.1 511,521 + HER17_RS02300 0.80 -0.2 511,522 - HER17_RS02300 0.80 -0.4 511,522 - HER17_RS02300 0.80 -0.1 511,536 + HER17_RS02300 0.81 -0.0 511,536 + HER17_RS02300 0.81 -0.1 511,536 + HER17_RS02300 0.81 +0.3 511,536 + HER17_RS02300 0.81 -0.2 511,537 - HER17_RS02300 0.81 +0.7 511,537 - HER17_RS02300 0.81 +0.6 511,537 - HER17_RS02300 0.81 -0.0 511,550 + HER17_RS02300 0.82 -0.2 511,595 - HER17_RS02300 0.84 +1.6 511,611 + HER17_RS02300 0.85 +0.2 511,612 - HER17_RS02300 0.85 +0.2 511,726 - -0.5 511,738 + -0.4 511,749 - -0.6 511,776 + +0.9 511,777 - +0.0 511,777 - +1.2 511,777 - +0.2 511,824 + +0.7 511,824 + -0.2 511,824 + -0.7 511,824 + +0.0 511,825 - -0.8 511,825 - +0.4 511,825 - -0.4 511,825 - -1.0 511,829 + +0.8 511,829 + -0.2 511,829 + -0.5 511,829 + +0.6 511,829 + -0.2 511,829 + -0.4 511,832 + +0.0 511,832 + +0.4 511,833 - -0.2 511,833 - -0.4 512,001 + +0.1 512,024 - +0.0 512,068 - +0.9 512,084 + +0.1 512,085 - -0.3 512,090 + -0.1 512,091 - +1.0 512,091 - +0.1 512,094 - +0.3 512,094 - +0.5 512,094 - +1.1 512,094 - +0.7 512,124 + +0.1 512,125 - -0.2 512,287 + HER17_RS02305 0.17 -0.7 512,287 + HER17_RS02305 0.17 -0.3 512,407 + HER17_RS02305 0.32 -1.4 512,408 - HER17_RS02305 0.32 -0.9 512,408 - HER17_RS02305 0.32 +0.1 512,408 - HER17_RS02305 0.32 -0.3 512,459 + HER17_RS02305 0.38 +0.7 512,459 + HER17_RS02305 0.38 -0.8 512,459 + HER17_RS02305 0.38 +0.2 512,459 + HER17_RS02305 0.38 -0.7 512,545 + HER17_RS02305 0.48 +0.2 512,545 + HER17_RS02305 0.48 +0.1 512,545 + HER17_RS02305 0.48 -0.1 512,545 + HER17_RS02305 0.48 +0.9 512,578 + HER17_RS02305 0.52 +0.4 512,579 - HER17_RS02305 0.52 -0.0 512,579 - HER17_RS02305 0.52 +0.3 512,631 - HER17_RS02305 0.59 -0.5 512,639 + HER17_RS02305 0.60 -0.4 512,639 + HER17_RS02305 0.60 +1.1 512,640 - HER17_RS02305 0.60 -0.3 512,640 - HER17_RS02305 0.60 +1.1 512,640 - HER17_RS02305 0.60 -0.2 512,640 - HER17_RS02305 0.60 -0.1 512,857 + HER17_RS02305 0.86 +0.7 512,858 - HER17_RS02305 0.86 -0.5 512,859 + HER17_RS02305 0.86 -0.7 512,860 - HER17_RS02305 0.86 +0.5 512,860 - HER17_RS02305 0.86 -1.4 512,860 - HER17_RS02305 0.86 -0.5 512,860 - HER17_RS02305 0.86 -0.6 512,860 - HER17_RS02305 0.86 +0.7 512,860 - HER17_RS02305 0.86 -0.0
Or see this region's nucleotide sequence