Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS02210 and HER17_RS02215 are separated by 56 nucleotides HER17_RS02215 and HER17_RS02220 are separated by 67 nucleotides
HER17_RS02210: HER17_RS02210 - Trk system potassium transporter TrkA, at 491,269 to 492,645
_RS02210
HER17_RS02215: HER17_RS02215 - 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB, at 492,702 to 493,991
_RS02215
HER17_RS02220: HER17_RS02220 - methionyl-tRNA formyltransferase, at 494,059 to 495,006
_RS02220
Position (kb) 492
493
494 Strain fitness (log2 ratio) -2
-1
0
1 at 491.994 kb on + strand, within HER17_RS02210 at 491.995 kb on - strand, within HER17_RS02210 at 492.104 kb on - strand, within HER17_RS02210 at 492.161 kb on + strand, within HER17_RS02210 at 492.162 kb on - strand, within HER17_RS02210 at 492.164 kb on + strand, within HER17_RS02210 at 492.164 kb on + strand, within HER17_RS02210 at 492.165 kb on - strand, within HER17_RS02210 at 492.172 kb on - strand, within HER17_RS02210 at 492.193 kb on - strand, within HER17_RS02210 at 492.646 kb on - strand at 492.648 kb on + strand at 492.648 kb on + strand at 492.648 kb on + strand at 492.649 kb on - strand at 492.701 kb on - strand at 492.765 kb on + strand at 492.765 kb on + strand at 492.765 kb on + strand at 492.766 kb on - strand at 492.766 kb on - strand at 492.767 kb on + strand at 492.767 kb on + strand at 492.767 kb on + strand at 492.785 kb on + strand at 492.785 kb on + strand at 492.785 kb on + strand at 492.785 kb on + strand at 492.785 kb on + strand at 492.785 kb on + strand at 492.786 kb on - strand at 492.786 kb on - strand at 492.786 kb on - strand at 492.786 kb on - strand at 492.786 kb on - strand at 492.822 kb on + strand at 492.872 kb on + strand, within HER17_RS02215 at 492.877 kb on + strand, within HER17_RS02215 at 492.877 kb on + strand, within HER17_RS02215 at 492.877 kb on + strand, within HER17_RS02215 at 492.877 kb on + strand, within HER17_RS02215 at 492.877 kb on + strand, within HER17_RS02215 at 492.877 kb on + strand, within HER17_RS02215 at 492.877 kb on + strand, within HER17_RS02215 at 492.878 kb on - strand, within HER17_RS02215 at 492.878 kb on - strand, within HER17_RS02215 at 492.878 kb on - strand, within HER17_RS02215 at 492.878 kb on - strand, within HER17_RS02215 at 492.905 kb on - strand, within HER17_RS02215 at 492.956 kb on + strand, within HER17_RS02215 at 492.956 kb on + strand, within HER17_RS02215 at 492.956 kb on + strand, within HER17_RS02215 at 492.956 kb on + strand, within HER17_RS02215 at 492.957 kb on - strand, within HER17_RS02215 at 492.957 kb on - strand, within HER17_RS02215 at 492.957 kb on - strand, within HER17_RS02215 at 492.957 kb on - strand, within HER17_RS02215 at 492.957 kb on - strand, within HER17_RS02215 at 492.980 kb on + strand, within HER17_RS02215 at 492.980 kb on + strand, within HER17_RS02215 at 492.980 kb on + strand, within HER17_RS02215 at 492.981 kb on - strand, within HER17_RS02215 at 492.981 kb on - strand, within HER17_RS02215 at 492.981 kb on - strand, within HER17_RS02215 at 492.981 kb on - strand, within HER17_RS02215 at 492.981 kb on - strand, within HER17_RS02215 at 492.981 kb on - strand, within HER17_RS02215 at 492.981 kb on - strand, within HER17_RS02215 at 493.095 kb on + strand, within HER17_RS02215 at 493.158 kb on + strand, within HER17_RS02215 at 493.158 kb on + strand, within HER17_RS02215 at 493.159 kb on - strand, within HER17_RS02215 at 493.159 kb on - strand, within HER17_RS02215 at 493.159 kb on - strand, within HER17_RS02215 at 493.159 kb on - strand, within HER17_RS02215 at 493.159 kb on - strand, within HER17_RS02215 at 493.174 kb on - strand, within HER17_RS02215 at 493.174 kb on - strand, within HER17_RS02215 at 493.202 kb on + strand, within HER17_RS02215 at 493.203 kb on - strand, within HER17_RS02215 at 493.303 kb on - strand, within HER17_RS02215 at 493.303 kb on - strand, within HER17_RS02215 at 493.303 kb on - strand, within HER17_RS02215 at 493.378 kb on + strand, within HER17_RS02215 at 493.413 kb on + strand, within HER17_RS02215 at 493.414 kb on - strand, within HER17_RS02215 at 493.414 kb on - strand, within HER17_RS02215 at 493.416 kb on + strand, within HER17_RS02215 at 493.416 kb on + strand, within HER17_RS02215 at 493.417 kb on - strand, within HER17_RS02215 at 493.417 kb on - strand, within HER17_RS02215 at 493.429 kb on + strand, within HER17_RS02215 at 493.429 kb on + strand, within HER17_RS02215 at 493.430 kb on - strand, within HER17_RS02215 at 493.430 kb on - strand, within HER17_RS02215 at 493.430 kb on - strand, within HER17_RS02215 at 493.464 kb on + strand, within HER17_RS02215 at 493.502 kb on + strand, within HER17_RS02215 at 493.502 kb on + strand, within HER17_RS02215 at 493.502 kb on + strand, within HER17_RS02215 at 493.503 kb on - strand, within HER17_RS02215 at 493.503 kb on - strand, within HER17_RS02215 at 493.626 kb on + strand, within HER17_RS02215 at 493.626 kb on + strand, within HER17_RS02215 at 493.629 kb on + strand, within HER17_RS02215 at 493.630 kb on - strand, within HER17_RS02215 at 493.683 kb on + strand, within HER17_RS02215 at 493.721 kb on + strand, within HER17_RS02215 at 493.723 kb on + strand, within HER17_RS02215 at 493.736 kb on - strand, within HER17_RS02215 at 493.756 kb on + strand, within HER17_RS02215 at 493.757 kb on - strand, within HER17_RS02215 at 493.775 kb on + strand, within HER17_RS02215 at 493.775 kb on + strand, within HER17_RS02215 at 493.775 kb on + strand, within HER17_RS02215 at 493.790 kb on + strand, within HER17_RS02215 at 493.791 kb on - strand, within HER17_RS02215 at 493.808 kb on + strand, within HER17_RS02215 at 493.836 kb on + strand, within HER17_RS02215 at 493.839 kb on + strand, within HER17_RS02215 at 493.839 kb on + strand, within HER17_RS02215 at 493.839 kb on + strand, within HER17_RS02215 at 493.905 kb on + strand at 493.905 kb on + strand at 493.905 kb on + strand at 493.906 kb on - strand at 493.908 kb on + strand at 493.909 kb on - strand at 493.909 kb on - strand at 493.964 kb on + strand at 493.965 kb on - strand at 493.965 kb on - strand at 493.971 kb on + strand at 493.972 kb on - strand at 493.972 kb on - strand at 493.978 kb on + strand at 494.007 kb on + strand at 494.007 kb on + strand at 494.007 kb on + strand at 494.007 kb on + strand at 494.007 kb on + strand at 494.007 kb on + strand at 494.007 kb on + strand at 494.007 kb on + strand at 494.008 kb on - strand at 494.008 kb on - strand at 494.008 kb on - strand at 494.008 kb on - strand at 494.008 kb on - strand at 494.009 kb on + strand at 494.009 kb on + strand at 494.010 kb on - strand at 494.010 kb on - strand at 494.010 kb on - strand at 494.010 kb on - strand at 494.010 kb on - strand at 494.013 kb on + strand at 494.014 kb on - strand at 494.014 kb on - strand at 494.014 kb on - strand at 494.014 kb on - strand at 494.027 kb on + strand at 494.028 kb on - strand at 494.028 kb on - strand at 494.029 kb on + strand at 494.029 kb on + strand at 494.029 kb on + strand at 494.029 kb on + strand at 494.060 kb on + strand at 494.060 kb on + strand at 494.061 kb on - strand at 494.070 kb on + strand at 494.071 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 491,994 + HER17_RS02210 0.53 -1.8 491,995 - HER17_RS02210 0.53 -1.8 492,104 - HER17_RS02210 0.61 -0.7 492,161 + HER17_RS02210 0.65 -1.1 492,162 - HER17_RS02210 0.65 -2.6 492,164 + HER17_RS02210 0.65 +0.5 492,164 + HER17_RS02210 0.65 -0.9 492,165 - HER17_RS02210 0.65 -2.4 492,172 - HER17_RS02210 0.66 -0.6 492,193 - HER17_RS02210 0.67 -2.0 492,646 - +0.6 492,648 + -0.9 492,648 + -0.1 492,648 + -1.9 492,649 - -0.5 492,701 - +1.0 492,765 + +0.7 492,765 + -1.0 492,765 + +0.4 492,766 - -0.3 492,766 - -0.0 492,767 + +0.1 492,767 + -0.6 492,767 + -0.3 492,785 + +0.9 492,785 + -0.5 492,785 + +0.1 492,785 + -0.2 492,785 + -0.2 492,785 + -0.2 492,786 - -1.4 492,786 - -0.6 492,786 - +0.7 492,786 - -0.3 492,786 - +1.0 492,822 + -0.2 492,872 + HER17_RS02215 0.13 -0.6 492,877 + HER17_RS02215 0.14 +0.2 492,877 + HER17_RS02215 0.14 +0.2 492,877 + HER17_RS02215 0.14 +0.2 492,877 + HER17_RS02215 0.14 -1.0 492,877 + HER17_RS02215 0.14 +0.1 492,877 + HER17_RS02215 0.14 -1.2 492,877 + HER17_RS02215 0.14 -1.0 492,878 - HER17_RS02215 0.14 -0.1 492,878 - HER17_RS02215 0.14 +0.8 492,878 - HER17_RS02215 0.14 +0.4 492,878 - HER17_RS02215 0.14 -0.6 492,905 - HER17_RS02215 0.16 -0.2 492,956 + HER17_RS02215 0.20 -0.1 492,956 + HER17_RS02215 0.20 -0.6 492,956 + HER17_RS02215 0.20 +0.2 492,956 + HER17_RS02215 0.20 +0.2 492,957 - HER17_RS02215 0.20 +0.1 492,957 - HER17_RS02215 0.20 -0.0 492,957 - HER17_RS02215 0.20 -0.6 492,957 - HER17_RS02215 0.20 -0.9 492,957 - HER17_RS02215 0.20 +0.2 492,980 + HER17_RS02215 0.22 -1.2 492,980 + HER17_RS02215 0.22 -1.6 492,980 + HER17_RS02215 0.22 -1.4 492,981 - HER17_RS02215 0.22 +0.7 492,981 - HER17_RS02215 0.22 -0.2 492,981 - HER17_RS02215 0.22 -0.2 492,981 - HER17_RS02215 0.22 -0.3 492,981 - HER17_RS02215 0.22 +0.1 492,981 - HER17_RS02215 0.22 +0.4 492,981 - HER17_RS02215 0.22 -0.2 493,095 + HER17_RS02215 0.30 +0.7 493,158 + HER17_RS02215 0.35 -0.7 493,158 + HER17_RS02215 0.35 -0.1 493,159 - HER17_RS02215 0.35 -0.1 493,159 - HER17_RS02215 0.35 -0.4 493,159 - HER17_RS02215 0.35 -1.2 493,159 - HER17_RS02215 0.35 -0.2 493,159 - HER17_RS02215 0.35 +0.0 493,174 - HER17_RS02215 0.37 -0.7 493,174 - HER17_RS02215 0.37 +0.6 493,202 + HER17_RS02215 0.39 -1.1 493,203 - HER17_RS02215 0.39 +0.4 493,303 - HER17_RS02215 0.47 +0.1 493,303 - HER17_RS02215 0.47 -0.2 493,303 - HER17_RS02215 0.47 -0.1 493,378 + HER17_RS02215 0.52 +0.4 493,413 + HER17_RS02215 0.55 -0.3 493,414 - HER17_RS02215 0.55 +0.8 493,414 - HER17_RS02215 0.55 -0.4 493,416 + HER17_RS02215 0.55 -1.2 493,416 + HER17_RS02215 0.55 -0.1 493,417 - HER17_RS02215 0.55 +0.2 493,417 - HER17_RS02215 0.55 -0.1 493,429 + HER17_RS02215 0.56 -0.4 493,429 + HER17_RS02215 0.56 -0.7 493,430 - HER17_RS02215 0.56 -0.1 493,430 - HER17_RS02215 0.56 -0.1 493,430 - HER17_RS02215 0.56 -0.3 493,464 + HER17_RS02215 0.59 -0.2 493,502 + HER17_RS02215 0.62 -1.6 493,502 + HER17_RS02215 0.62 -2.2 493,502 + HER17_RS02215 0.62 +0.3 493,503 - HER17_RS02215 0.62 +0.2 493,503 - HER17_RS02215 0.62 +0.1 493,626 + HER17_RS02215 0.72 -0.3 493,626 + HER17_RS02215 0.72 -0.0 493,629 + HER17_RS02215 0.72 +0.4 493,630 - HER17_RS02215 0.72 +0.2 493,683 + HER17_RS02215 0.76 -0.6 493,721 + HER17_RS02215 0.79 -1.1 493,723 + HER17_RS02215 0.79 -0.0 493,736 - HER17_RS02215 0.80 -0.2 493,756 + HER17_RS02215 0.82 +0.6 493,757 - HER17_RS02215 0.82 +0.6 493,775 + HER17_RS02215 0.83 -0.7 493,775 + HER17_RS02215 0.83 -0.1 493,775 + HER17_RS02215 0.83 -0.8 493,790 + HER17_RS02215 0.84 -1.1 493,791 - HER17_RS02215 0.84 -0.1 493,808 + HER17_RS02215 0.86 +0.7 493,836 + HER17_RS02215 0.88 -1.2 493,839 + HER17_RS02215 0.88 -0.2 493,839 + HER17_RS02215 0.88 +0.0 493,839 + HER17_RS02215 0.88 -1.2 493,905 + -0.4 493,905 + -0.8 493,905 + +0.5 493,906 - -0.6 493,908 + -0.3 493,909 - -1.4 493,909 - +0.4 493,964 + -1.2 493,965 - -0.3 493,965 - +0.1 493,971 + -0.2 493,972 - -1.1 493,972 - +0.8 493,978 + -1.0 494,007 + -0.1 494,007 + -0.7 494,007 + -0.4 494,007 + -0.5 494,007 + -0.6 494,007 + -0.2 494,007 + +0.4 494,007 + +0.2 494,008 - -0.8 494,008 - +0.5 494,008 - -0.7 494,008 - -0.7 494,008 - +0.2 494,009 + +0.9 494,009 + -1.9 494,010 - +0.3 494,010 - -0.9 494,010 - +0.5 494,010 - +0.2 494,010 - +0.2 494,013 + -0.8 494,014 - +0.8 494,014 - -0.3 494,014 - +0.9 494,014 - -0.2 494,027 + -0.4 494,028 - -0.3 494,028 - -1.1 494,029 + -0.8 494,029 + -0.6 494,029 + +1.4 494,029 + +0.4 494,060 + +0.8 494,060 + -0.8 494,061 - -0.6 494,070 + -0.1 494,071 - -0.5
Or see this region's nucleotide sequence