Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS01155

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS01150 and HER17_RS01155 are separated by 67 nucleotidesHER17_RS01155 and HER17_RS01160 are separated by 125 nucleotides HER17_RS01150: HER17_RS01150 - ECA polysaccharide chain length modulation protein, at 268,233 to 269,279 _RS01150 HER17_RS01155: HER17_RS01155 - UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing), at 269,347 to 270,465 _RS01155 HER17_RS01160: HER17_RS01160 - UDP-N-acetyl-D-mannosamine dehydrogenase, at 270,591 to 271,853 _RS01160 Position (kb) 269 270 271Strain fitness (log2 ratio) -2 -1 0 1at 268.371 kb on + strand, within HER17_RS01150at 268.377 kb on + strand, within HER17_RS01150at 268.377 kb on + strand, within HER17_RS01150at 268.377 kb on + strand, within HER17_RS01150at 268.378 kb on - strand, within HER17_RS01150at 268.385 kb on + strand, within HER17_RS01150at 268.385 kb on + strand, within HER17_RS01150at 268.433 kb on + strand, within HER17_RS01150at 268.434 kb on - strand, within HER17_RS01150at 268.434 kb on - strand, within HER17_RS01150at 268.438 kb on + strand, within HER17_RS01150at 268.438 kb on + strand, within HER17_RS01150at 268.438 kb on + strand, within HER17_RS01150at 268.438 kb on + strand, within HER17_RS01150at 268.439 kb on - strand, within HER17_RS01150at 268.439 kb on - strand, within HER17_RS01150at 268.439 kb on - strand, within HER17_RS01150at 268.450 kb on - strand, within HER17_RS01150at 268.450 kb on - strand, within HER17_RS01150at 268.473 kb on - strand, within HER17_RS01150at 268.521 kb on - strand, within HER17_RS01150at 268.521 kb on - strand, within HER17_RS01150at 268.536 kb on + strand, within HER17_RS01150at 268.566 kb on + strand, within HER17_RS01150at 268.567 kb on - strand, within HER17_RS01150at 268.567 kb on - strand, within HER17_RS01150at 268.603 kb on - strand, within HER17_RS01150at 268.603 kb on - strand, within HER17_RS01150at 268.605 kb on + strand, within HER17_RS01150at 268.605 kb on + strand, within HER17_RS01150at 268.606 kb on - strand, within HER17_RS01150at 268.606 kb on - strand, within HER17_RS01150at 268.606 kb on - strand, within HER17_RS01150at 268.606 kb on - strand, within HER17_RS01150at 268.607 kb on + strand, within HER17_RS01150at 268.607 kb on + strand, within HER17_RS01150at 268.607 kb on + strand, within HER17_RS01150at 268.607 kb on + strand, within HER17_RS01150at 268.608 kb on - strand, within HER17_RS01150at 268.608 kb on - strand, within HER17_RS01150at 268.608 kb on - strand, within HER17_RS01150at 268.608 kb on - strand, within HER17_RS01150at 268.670 kb on + strand, within HER17_RS01150at 268.670 kb on + strand, within HER17_RS01150at 268.670 kb on + strand, within HER17_RS01150at 268.671 kb on - strand, within HER17_RS01150at 268.767 kb on + strand, within HER17_RS01150at 268.768 kb on - strand, within HER17_RS01150at 268.949 kb on + strand, within HER17_RS01150at 268.949 kb on + strand, within HER17_RS01150at 268.950 kb on - strand, within HER17_RS01150at 268.950 kb on - strand, within HER17_RS01150at 268.950 kb on - strand, within HER17_RS01150at 268.950 kb on - strand, within HER17_RS01150at 268.952 kb on + strand, within HER17_RS01150at 268.970 kb on + strand, within HER17_RS01150at 269.067 kb on + strand, within HER17_RS01150at 269.079 kb on + strand, within HER17_RS01150at 269.079 kb on + strand, within HER17_RS01150at 269.148 kb on + strand, within HER17_RS01150at 269.149 kb on - strand, within HER17_RS01150at 269.155 kb on - strand, within HER17_RS01150at 269.354 kb on + strandat 269.354 kb on + strandat 269.354 kb on + strandat 269.354 kb on + strandat 269.500 kb on - strand, within HER17_RS01155at 269.513 kb on - strand, within HER17_RS01155at 269.526 kb on + strand, within HER17_RS01155at 269.526 kb on + strand, within HER17_RS01155at 269.556 kb on - strand, within HER17_RS01155at 269.621 kb on + strand, within HER17_RS01155at 269.621 kb on + strand, within HER17_RS01155at 269.622 kb on - strand, within HER17_RS01155at 269.622 kb on - strand, within HER17_RS01155at 269.669 kb on - strand, within HER17_RS01155at 269.676 kb on + strand, within HER17_RS01155at 269.694 kb on - strand, within HER17_RS01155at 269.709 kb on + strand, within HER17_RS01155at 269.722 kb on + strand, within HER17_RS01155at 269.723 kb on - strand, within HER17_RS01155at 269.746 kb on - strand, within HER17_RS01155at 269.777 kb on - strand, within HER17_RS01155at 269.777 kb on - strand, within HER17_RS01155at 269.777 kb on - strand, within HER17_RS01155at 269.777 kb on - strand, within HER17_RS01155at 269.841 kb on + strand, within HER17_RS01155at 269.856 kb on + strand, within HER17_RS01155at 269.859 kb on + strand, within HER17_RS01155at 269.927 kb on + strand, within HER17_RS01155at 269.927 kb on + strand, within HER17_RS01155at 269.938 kb on + strand, within HER17_RS01155at 270.062 kb on + strand, within HER17_RS01155at 270.063 kb on - strand, within HER17_RS01155at 270.093 kb on + strand, within HER17_RS01155at 270.093 kb on + strand, within HER17_RS01155at 270.136 kb on - strand, within HER17_RS01155at 270.163 kb on + strand, within HER17_RS01155at 270.164 kb on - strand, within HER17_RS01155at 270.164 kb on - strand, within HER17_RS01155at 270.178 kb on + strand, within HER17_RS01155at 270.178 kb on + strand, within HER17_RS01155at 270.178 kb on + strand, within HER17_RS01155at 270.179 kb on - strand, within HER17_RS01155at 270.179 kb on - strand, within HER17_RS01155at 270.196 kb on + strand, within HER17_RS01155at 270.197 kb on - strand, within HER17_RS01155at 270.197 kb on - strand, within HER17_RS01155at 270.197 kb on - strand, within HER17_RS01155at 270.197 kb on - strand, within HER17_RS01155at 270.197 kb on - strand, within HER17_RS01155at 270.320 kb on + strand, within HER17_RS01155at 270.321 kb on - strand, within HER17_RS01155at 270.357 kb on + strandat 270.357 kb on + strandat 270.357 kb on + strandat 270.357 kb on + strandat 270.357 kb on + strandat 270.358 kb on - strandat 270.358 kb on - strandat 270.358 kb on - strandat 270.358 kb on - strandat 270.358 kb on - strandat 270.358 kb on - strandat 270.358 kb on - strandat 270.358 kb on - strandat 270.382 kb on + strandat 270.412 kb on + strandat 270.464 kb on - strandat 270.538 kb on + strandat 270.539 kb on - strandat 270.539 kb on - strandat 270.542 kb on + strandat 270.543 kb on - strandat 270.543 kb on - strandat 270.543 kb on - strandat 270.543 kb on - strandat 270.570 kb on + strandat 270.578 kb on - strandat 270.590 kb on + strandat 270.590 kb on + strandat 270.590 kb on + strandat 270.591 kb on - strandat 270.591 kb on - strandat 270.591 kb on - strandat 270.599 kb on + strandat 270.600 kb on - strandat 270.603 kb on - strandat 270.879 kb on + strand, within HER17_RS01160at 270.879 kb on + strand, within HER17_RS01160at 271.050 kb on - strand, within HER17_RS01160at 271.104 kb on - strand, within HER17_RS01160at 271.164 kb on + strand, within HER17_RS01160at 271.164 kb on + strand, within HER17_RS01160at 271.164 kb on + strand, within HER17_RS01160at 271.164 kb on + strand, within HER17_RS01160at 271.165 kb on - strand, within HER17_RS01160at 271.165 kb on - strand, within HER17_RS01160at 271.165 kb on - strand, within HER17_RS01160at 271.165 kb on - strand, within HER17_RS01160at 271.165 kb on - strand, within HER17_RS01160at 271.165 kb on - strand, within HER17_RS01160at 271.196 kb on + strand, within HER17_RS01160at 271.199 kb on + strand, within HER17_RS01160at 271.309 kb on + strand, within HER17_RS01160at 271.309 kb on + strand, within HER17_RS01160at 271.310 kb on - strand, within HER17_RS01160at 271.310 kb on - strand, within HER17_RS01160at 271.352 kb on + strand, within HER17_RS01160at 271.353 kb on - strand, within HER17_RS01160at 271.449 kb on - strand, within HER17_RS01160

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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268,371 + HER17_RS01150 0.13 -0.4
268,377 + HER17_RS01150 0.14 -0.2
268,377 + HER17_RS01150 0.14 +1.3
268,377 + HER17_RS01150 0.14 +0.5
268,378 - HER17_RS01150 0.14 +1.0
268,385 + HER17_RS01150 0.15 -0.6
268,385 + HER17_RS01150 0.15 +0.7
268,433 + HER17_RS01150 0.19 -0.0
268,434 - HER17_RS01150 0.19 +0.4
268,434 - HER17_RS01150 0.19 -0.4
268,438 + HER17_RS01150 0.20 +1.0
268,438 + HER17_RS01150 0.20 -0.8
268,438 + HER17_RS01150 0.20 -0.0
268,438 + HER17_RS01150 0.20 -1.4
268,439 - HER17_RS01150 0.20 -0.2
268,439 - HER17_RS01150 0.20 -0.6
268,439 - HER17_RS01150 0.20 +0.6
268,450 - HER17_RS01150 0.21 -0.2
268,450 - HER17_RS01150 0.21 -0.6
268,473 - HER17_RS01150 0.23 -0.1
268,521 - HER17_RS01150 0.28 -1.2
268,521 - HER17_RS01150 0.28 -0.2
268,536 + HER17_RS01150 0.29 -0.3
268,566 + HER17_RS01150 0.32 +0.3
268,567 - HER17_RS01150 0.32 +0.2
268,567 - HER17_RS01150 0.32 -2.1
268,603 - HER17_RS01150 0.35 -0.3
268,603 - HER17_RS01150 0.35 +0.1
268,605 + HER17_RS01150 0.36 +0.5
268,605 + HER17_RS01150 0.36 -0.1
268,606 - HER17_RS01150 0.36 -0.9
268,606 - HER17_RS01150 0.36 +0.5
268,606 - HER17_RS01150 0.36 -0.6
268,606 - HER17_RS01150 0.36 -0.6
268,607 + HER17_RS01150 0.36 +0.0
268,607 + HER17_RS01150 0.36 +0.4
268,607 + HER17_RS01150 0.36 +0.2
268,607 + HER17_RS01150 0.36 +0.2
268,608 - HER17_RS01150 0.36 -0.6
268,608 - HER17_RS01150 0.36 -0.1
268,608 - HER17_RS01150 0.36 +0.0
268,608 - HER17_RS01150 0.36 +0.3
268,670 + HER17_RS01150 0.42 -0.2
268,670 + HER17_RS01150 0.42 +0.2
268,670 + HER17_RS01150 0.42 +0.4
268,671 - HER17_RS01150 0.42 +0.3
268,767 + HER17_RS01150 0.51 -0.3
268,768 - HER17_RS01150 0.51 -0.2
268,949 + HER17_RS01150 0.68 +0.2
268,949 + HER17_RS01150 0.68 +0.5
268,950 - HER17_RS01150 0.68 -1.5
268,950 - HER17_RS01150 0.68 -0.2
268,950 - HER17_RS01150 0.68 -0.7
268,950 - HER17_RS01150 0.68 -0.7
268,952 + HER17_RS01150 0.69 -0.6
268,970 + HER17_RS01150 0.70 +0.6
269,067 + HER17_RS01150 0.80 +0.9
269,079 + HER17_RS01150 0.81 +0.2
269,079 + HER17_RS01150 0.81 -0.7
269,148 + HER17_RS01150 0.87 -0.3
269,149 - HER17_RS01150 0.87 -0.7
269,155 - HER17_RS01150 0.88 +0.1
269,354 + -0.9
269,354 + -0.1
269,354 + -0.4
269,354 + -0.2
269,500 - HER17_RS01155 0.14 +0.0
269,513 - HER17_RS01155 0.15 -0.0
269,526 + HER17_RS01155 0.16 -0.5
269,526 + HER17_RS01155 0.16 -1.2
269,556 - HER17_RS01155 0.19 -1.9
269,621 + HER17_RS01155 0.24 -0.8
269,621 + HER17_RS01155 0.24 -1.3
269,622 - HER17_RS01155 0.25 -0.8
269,622 - HER17_RS01155 0.25 -0.2
269,669 - HER17_RS01155 0.29 -0.3
269,676 + HER17_RS01155 0.29 -0.3
269,694 - HER17_RS01155 0.31 -0.9
269,709 + HER17_RS01155 0.32 -0.8
269,722 + HER17_RS01155 0.34 -0.5
269,723 - HER17_RS01155 0.34 +0.0
269,746 - HER17_RS01155 0.36 -1.5
269,777 - HER17_RS01155 0.38 -0.6
269,777 - HER17_RS01155 0.38 -0.8
269,777 - HER17_RS01155 0.38 -1.0
269,777 - HER17_RS01155 0.38 -0.6
269,841 + HER17_RS01155 0.44 -0.4
269,856 + HER17_RS01155 0.45 -0.7
269,859 + HER17_RS01155 0.46 -0.7
269,927 + HER17_RS01155 0.52 -0.5
269,927 + HER17_RS01155 0.52 +0.8
269,938 + HER17_RS01155 0.53 -1.0
270,062 + HER17_RS01155 0.64 -0.7
270,063 - HER17_RS01155 0.64 -0.2
270,093 + HER17_RS01155 0.67 -0.9
270,093 + HER17_RS01155 0.67 +0.5
270,136 - HER17_RS01155 0.71 -0.1
270,163 + HER17_RS01155 0.73 -1.7
270,164 - HER17_RS01155 0.73 -0.2
270,164 - HER17_RS01155 0.73 -0.4
270,178 + HER17_RS01155 0.74 -0.3
270,178 + HER17_RS01155 0.74 -0.5
270,178 + HER17_RS01155 0.74 +0.1
270,179 - HER17_RS01155 0.74 -0.5
270,179 - HER17_RS01155 0.74 -1.4
270,196 + HER17_RS01155 0.76 -1.1
270,197 - HER17_RS01155 0.76 +0.0
270,197 - HER17_RS01155 0.76 -0.1
270,197 - HER17_RS01155 0.76 -0.3
270,197 - HER17_RS01155 0.76 -0.7
270,197 - HER17_RS01155 0.76 -0.3
270,320 + HER17_RS01155 0.87 +0.3
270,321 - HER17_RS01155 0.87 -1.3
270,357 + -1.0
270,357 + -0.5
270,357 + -0.6
270,357 + -0.8
270,357 + -0.4
270,358 - -0.5
270,358 - -0.9
270,358 - -0.7
270,358 - -0.4
270,358 - -0.5
270,358 - -2.5
270,358 - +0.8
270,358 - -0.7
270,382 + -0.8
270,412 + +0.4
270,464 - -1.2
270,538 + +0.1
270,539 - -0.2
270,539 - -2.0
270,542 + +0.7
270,543 - -0.1
270,543 - +0.1
270,543 - -0.3
270,543 - +0.1
270,570 + +0.2
270,578 - -0.3
270,590 + -0.7
270,590 + -1.7
270,590 + -0.1
270,591 - +1.7
270,591 - +1.0
270,591 - +0.5
270,599 + +0.4
270,600 - -0.3
270,603 - +0.4
270,879 + HER17_RS01160 0.23 -1.1
270,879 + HER17_RS01160 0.23 -0.6
271,050 - HER17_RS01160 0.36 +1.5
271,104 - HER17_RS01160 0.41 -0.1
271,164 + HER17_RS01160 0.45 -0.7
271,164 + HER17_RS01160 0.45 -0.5
271,164 + HER17_RS01160 0.45 -0.8
271,164 + HER17_RS01160 0.45 +0.1
271,165 - HER17_RS01160 0.45 -0.8
271,165 - HER17_RS01160 0.45 -0.0
271,165 - HER17_RS01160 0.45 -1.0
271,165 - HER17_RS01160 0.45 +0.4
271,165 - HER17_RS01160 0.45 -0.4
271,165 - HER17_RS01160 0.45 +0.3
271,196 + HER17_RS01160 0.48 -1.9
271,199 + HER17_RS01160 0.48 -0.7
271,309 + HER17_RS01160 0.57 +0.1
271,309 + HER17_RS01160 0.57 -1.0
271,310 - HER17_RS01160 0.57 -0.4
271,310 - HER17_RS01160 0.57 -0.6
271,352 + HER17_RS01160 0.60 -0.0
271,353 - HER17_RS01160 0.60 +0.1
271,449 - HER17_RS01160 0.68 -0.3

Or see this region's nucleotide sequence