Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS00645 and HER17_RS00650 are separated by 10 nucleotides HER17_RS00650 and HER17_RS00655 overlap by 31 nucleotides HER17_RS00655 and HER17_RS00660 are separated by 192 nucleotides
HER17_RS00645: HER17_RS00645 - tRNA (cytidine(34)-2'-O)-methyltransferase, at 148,215 to 148,679
_RS00645
HER17_RS00650: HER17_RS00650 - DUF3142 domain-containing protein, at 148,690 to 149,490
_RS00650
HER17_RS00655: HER17_RS00655 - hypothetical protein, at 149,460 to 151,634
_RS00655
HER17_RS00660: HER17_RS00660 - envelope stress sensor histidine kinase CpxA, at 151,827 to 153,197
_RS00660
Position (kb) 149
150
151
152 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 148.485 kb on + strand, within HER17_RS00645 at 148.485 kb on + strand, within HER17_RS00645 at 148.486 kb on - strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.502 kb on - strand, within HER17_RS00645 at 148.502 kb on - strand, within HER17_RS00645 at 148.502 kb on - strand, within HER17_RS00645 at 148.502 kb on - strand, within HER17_RS00645 at 148.502 kb on - strand, within HER17_RS00645 at 148.502 kb on - strand, within HER17_RS00645 at 148.502 kb on - strand, within HER17_RS00645 at 148.502 kb on - strand, within HER17_RS00645 at 148.502 kb on - strand, within HER17_RS00645 at 148.502 kb on - strand, within HER17_RS00645 at 148.543 kb on + strand, within HER17_RS00645 at 148.544 kb on - strand, within HER17_RS00645 at 148.544 kb on - strand, within HER17_RS00645 at 148.544 kb on - strand, within HER17_RS00645 at 148.544 kb on - strand, within HER17_RS00645 at 148.544 kb on - strand, within HER17_RS00645 at 148.547 kb on + strand, within HER17_RS00645 at 148.547 kb on + strand, within HER17_RS00645 at 148.595 kb on + strand, within HER17_RS00645 at 148.634 kb on + strand at 148.634 kb on + strand at 148.634 kb on + strand at 148.634 kb on + strand at 148.634 kb on + strand at 148.634 kb on + strand at 148.634 kb on + strand at 148.634 kb on + strand at 148.634 kb on + strand at 148.634 kb on + strand at 148.634 kb on + strand at 148.635 kb on - strand at 148.635 kb on - strand at 148.635 kb on - strand at 148.635 kb on - strand at 148.635 kb on - strand at 148.635 kb on - strand at 148.635 kb on - strand at 148.635 kb on - strand at 148.638 kb on + strand at 148.638 kb on + strand at 148.638 kb on + strand at 148.638 kb on + strand at 148.638 kb on + strand at 148.638 kb on + strand at 148.638 kb on + strand at 148.639 kb on - strand at 148.639 kb on - strand at 148.639 kb on - strand at 148.639 kb on - strand at 148.677 kb on + strand at 148.677 kb on + strand at 148.678 kb on - strand at 148.681 kb on + strand at 148.681 kb on + strand at 148.681 kb on + strand at 148.681 kb on + strand at 148.681 kb on + strand at 148.681 kb on + strand at 148.682 kb on - strand at 148.682 kb on - strand at 148.682 kb on - strand at 148.682 kb on - strand at 148.682 kb on - strand at 148.682 kb on - strand at 148.691 kb on + strand at 148.691 kb on + strand at 148.757 kb on + strand at 148.757 kb on + strand at 148.758 kb on - strand at 148.758 kb on - strand at 148.813 kb on + strand, within HER17_RS00650 at 148.859 kb on + strand, within HER17_RS00650 at 148.859 kb on + strand, within HER17_RS00650 at 148.860 kb on - strand, within HER17_RS00650 at 148.868 kb on + strand, within HER17_RS00650 at 148.878 kb on + strand, within HER17_RS00650 at 148.878 kb on + strand, within HER17_RS00650 at 148.879 kb on - strand, within HER17_RS00650 at 148.879 kb on - strand, within HER17_RS00650 at 148.895 kb on + strand, within HER17_RS00650 at 148.984 kb on - strand, within HER17_RS00650 at 148.986 kb on + strand, within HER17_RS00650 at 148.987 kb on - strand, within HER17_RS00650 at 148.987 kb on - strand, within HER17_RS00650 at 149.020 kb on + strand, within HER17_RS00650 at 149.042 kb on + strand, within HER17_RS00650 at 149.042 kb on + strand, within HER17_RS00650 at 149.042 kb on + strand, within HER17_RS00650 at 149.043 kb on - strand, within HER17_RS00650 at 149.131 kb on + strand, within HER17_RS00650 at 149.131 kb on + strand, within HER17_RS00650 at 149.132 kb on - strand, within HER17_RS00650 at 149.132 kb on - strand, within HER17_RS00650 at 149.132 kb on - strand, within HER17_RS00650 at 149.239 kb on + strand, within HER17_RS00650 at 149.247 kb on + strand, within HER17_RS00650 at 149.282 kb on + strand, within HER17_RS00650 at 149.283 kb on - strand, within HER17_RS00650 at 149.421 kb on + strand at 149.468 kb on - strand at 149.470 kb on + strand at 149.504 kb on - strand at 149.590 kb on + strand at 149.591 kb on - strand at 149.609 kb on - strand at 149.618 kb on - strand at 149.618 kb on - strand at 149.618 kb on - strand at 149.665 kb on + strand at 149.665 kb on + strand at 149.665 kb on + strand at 149.666 kb on - strand at 149.666 kb on - strand at 149.666 kb on - strand at 149.666 kb on - strand at 149.666 kb on - strand at 149.732 kb on + strand, within HER17_RS00655 at 149.732 kb on + strand, within HER17_RS00655 at 149.829 kb on + strand, within HER17_RS00655 at 149.829 kb on + strand, within HER17_RS00655 at 149.867 kb on - strand, within HER17_RS00655 at 149.867 kb on - strand, within HER17_RS00655 at 149.867 kb on - strand, within HER17_RS00655 at 149.957 kb on + strand, within HER17_RS00655 at 149.958 kb on - strand, within HER17_RS00655 at 149.958 kb on - strand, within HER17_RS00655 at 149.958 kb on - strand, within HER17_RS00655 at 149.958 kb on - strand, within HER17_RS00655 at 149.987 kb on - strand, within HER17_RS00655 at 150.029 kb on + strand, within HER17_RS00655 at 150.029 kb on + strand, within HER17_RS00655 at 150.030 kb on - strand, within HER17_RS00655 at 150.030 kb on - strand, within HER17_RS00655 at 150.104 kb on + strand, within HER17_RS00655 at 150.336 kb on + strand, within HER17_RS00655 at 150.337 kb on - strand, within HER17_RS00655 at 150.409 kb on + strand, within HER17_RS00655 at 150.409 kb on + strand, within HER17_RS00655 at 150.410 kb on - strand, within HER17_RS00655 at 150.410 kb on - strand, within HER17_RS00655 at 150.414 kb on + strand, within HER17_RS00655 at 150.414 kb on + strand, within HER17_RS00655 at 150.415 kb on - strand, within HER17_RS00655 at 150.415 kb on - strand, within HER17_RS00655 at 150.415 kb on - strand, within HER17_RS00655 at 150.433 kb on + strand, within HER17_RS00655 at 150.433 kb on + strand, within HER17_RS00655 at 150.433 kb on + strand, within HER17_RS00655 at 150.434 kb on - strand, within HER17_RS00655 at 150.434 kb on - strand, within HER17_RS00655 at 150.434 kb on - strand, within HER17_RS00655 at 150.722 kb on - strand, within HER17_RS00655 at 150.757 kb on + strand, within HER17_RS00655 at 150.757 kb on + strand, within HER17_RS00655 at 150.757 kb on + strand, within HER17_RS00655 at 150.758 kb on - strand, within HER17_RS00655 at 150.758 kb on - strand, within HER17_RS00655 at 150.758 kb on - strand, within HER17_RS00655 at 150.758 kb on - strand, within HER17_RS00655 at 150.784 kb on + strand, within HER17_RS00655 at 150.784 kb on + strand, within HER17_RS00655 at 150.785 kb on - strand, within HER17_RS00655 at 150.794 kb on + strand, within HER17_RS00655 at 150.795 kb on - strand, within HER17_RS00655 at 150.833 kb on + strand, within HER17_RS00655 at 150.854 kb on - strand, within HER17_RS00655 at 150.905 kb on + strand, within HER17_RS00655 at 150.905 kb on + strand, within HER17_RS00655 at 150.905 kb on + strand, within HER17_RS00655 at 150.906 kb on - strand, within HER17_RS00655 at 150.906 kb on - strand, within HER17_RS00655 at 150.906 kb on - strand, within HER17_RS00655 at 150.906 kb on - strand, within HER17_RS00655 at 150.906 kb on - strand, within HER17_RS00655 at 150.907 kb on + strand, within HER17_RS00655 at 150.907 kb on + strand, within HER17_RS00655 at 150.907 kb on + strand, within HER17_RS00655 at 150.907 kb on + strand, within HER17_RS00655 at 150.907 kb on + strand, within HER17_RS00655 at 150.908 kb on - strand, within HER17_RS00655 at 150.908 kb on - strand, within HER17_RS00655 at 150.908 kb on - strand, within HER17_RS00655 at 150.908 kb on - strand, within HER17_RS00655 at 151.015 kb on + strand, within HER17_RS00655 at 151.015 kb on + strand, within HER17_RS00655 at 151.016 kb on - strand, within HER17_RS00655 at 151.016 kb on - strand, within HER17_RS00655 at 151.016 kb on - strand, within HER17_RS00655 at 151.050 kb on + strand, within HER17_RS00655 at 151.056 kb on + strand, within HER17_RS00655 at 151.056 kb on + strand, within HER17_RS00655 at 151.056 kb on + strand, within HER17_RS00655 at 151.056 kb on + strand, within HER17_RS00655 at 151.057 kb on - strand, within HER17_RS00655 at 151.057 kb on - strand, within HER17_RS00655 at 151.057 kb on - strand, within HER17_RS00655 at 151.057 kb on - strand, within HER17_RS00655 at 151.057 kb on - strand, within HER17_RS00655 at 151.057 kb on - strand, within HER17_RS00655 at 151.085 kb on + strand, within HER17_RS00655 at 151.086 kb on - strand, within HER17_RS00655 at 151.086 kb on - strand, within HER17_RS00655 at 151.086 kb on - strand, within HER17_RS00655 at 151.087 kb on + strand, within HER17_RS00655 at 151.088 kb on - strand, within HER17_RS00655 at 151.209 kb on - strand, within HER17_RS00655 at 151.247 kb on + strand, within HER17_RS00655 at 151.248 kb on - strand, within HER17_RS00655 at 151.485 kb on - strand at 151.513 kb on + strand at 151.514 kb on - strand at 151.641 kb on + strand at 151.641 kb on + strand at 151.642 kb on - strand at 151.696 kb on - strand at 151.724 kb on + strand at 151.726 kb on + strand at 151.726 kb on + strand at 151.727 kb on - strand at 151.727 kb on - strand at 151.740 kb on + strand at 151.741 kb on - strand at 151.786 kb on + strand at 151.788 kb on + strand at 151.788 kb on + strand at 151.913 kb on + strand at 151.913 kb on + strand at 152.107 kb on + strand, within HER17_RS00660 at 152.244 kb on + strand, within HER17_RS00660 at 152.384 kb on + strand, within HER17_RS00660 at 152.583 kb on + strand, within HER17_RS00660 at 152.584 kb on - strand, within HER17_RS00660 at 152.584 kb on - strand, within HER17_RS00660
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 148,485 + HER17_RS00645 0.58 +0.1 148,485 + HER17_RS00645 0.58 +0.3 148,486 - HER17_RS00645 0.58 -1.2 148,501 + HER17_RS00645 0.62 +0.5 148,501 + HER17_RS00645 0.62 -0.9 148,501 + HER17_RS00645 0.62 -0.5 148,501 + HER17_RS00645 0.62 -0.3 148,501 + HER17_RS00645 0.62 -0.0 148,501 + HER17_RS00645 0.62 +0.3 148,501 + HER17_RS00645 0.62 +0.1 148,501 + HER17_RS00645 0.62 -0.3 148,501 + HER17_RS00645 0.62 -0.1 148,501 + HER17_RS00645 0.62 -0.3 148,501 + HER17_RS00645 0.62 -0.7 148,501 + HER17_RS00645 0.62 -0.3 148,501 + HER17_RS00645 0.62 +0.8 148,501 + HER17_RS00645 0.62 +0.5 148,501 + HER17_RS00645 0.62 -0.0 148,502 - HER17_RS00645 0.62 +0.2 148,502 - HER17_RS00645 0.62 -0.9 148,502 - HER17_RS00645 0.62 -0.3 148,502 - HER17_RS00645 0.62 +0.5 148,502 - HER17_RS00645 0.62 -0.3 148,502 - HER17_RS00645 0.62 -0.4 148,502 - HER17_RS00645 0.62 -0.2 148,502 - HER17_RS00645 0.62 +0.5 148,502 - HER17_RS00645 0.62 +0.4 148,502 - HER17_RS00645 0.62 +1.2 148,543 + HER17_RS00645 0.71 -0.4 148,544 - HER17_RS00645 0.71 +0.5 148,544 - HER17_RS00645 0.71 -1.0 148,544 - HER17_RS00645 0.71 -0.9 148,544 - HER17_RS00645 0.71 -0.5 148,544 - HER17_RS00645 0.71 +0.3 148,547 + HER17_RS00645 0.71 -1.0 148,547 + HER17_RS00645 0.71 +0.1 148,595 + HER17_RS00645 0.82 +0.6 148,634 + +0.3 148,634 + +0.5 148,634 + -0.1 148,634 + +0.4 148,634 + +0.8 148,634 + -0.5 148,634 + -0.6 148,634 + +0.7 148,634 + +0.5 148,634 + -0.2 148,634 + -1.2 148,635 - +0.1 148,635 - +0.3 148,635 - +0.4 148,635 - +1.1 148,635 - -1.0 148,635 - -0.5 148,635 - -0.9 148,635 - +0.1 148,638 + +0.0 148,638 + +0.4 148,638 + -0.4 148,638 + +0.4 148,638 + +0.2 148,638 + +1.0 148,638 + -0.1 148,639 - +0.8 148,639 - +0.0 148,639 - +0.5 148,639 - -0.4 148,677 + -0.1 148,677 + -0.0 148,678 - -0.3 148,681 + -0.1 148,681 + +2.0 148,681 + +0.1 148,681 + -0.2 148,681 + +0.4 148,681 + -2.7 148,682 - -0.4 148,682 - +0.4 148,682 - +0.7 148,682 - +0.9 148,682 - -0.5 148,682 - +0.3 148,691 + -0.4 148,691 + -1.1 148,757 + -0.9 148,757 + -0.2 148,758 - +0.5 148,758 - +0.4 148,813 + HER17_RS00650 0.15 -1.3 148,859 + HER17_RS00650 0.21 +0.4 148,859 + HER17_RS00650 0.21 -0.4 148,860 - HER17_RS00650 0.21 +0.1 148,868 + HER17_RS00650 0.22 +0.2 148,878 + HER17_RS00650 0.23 +0.1 148,878 + HER17_RS00650 0.23 -0.7 148,879 - HER17_RS00650 0.24 +0.3 148,879 - HER17_RS00650 0.24 +0.8 148,895 + HER17_RS00650 0.26 +0.3 148,984 - HER17_RS00650 0.37 -0.6 148,986 + HER17_RS00650 0.37 +0.4 148,987 - HER17_RS00650 0.37 -0.2 148,987 - HER17_RS00650 0.37 +0.1 149,020 + HER17_RS00650 0.41 +0.3 149,042 + HER17_RS00650 0.44 +1.4 149,042 + HER17_RS00650 0.44 -0.1 149,042 + HER17_RS00650 0.44 +2.3 149,043 - HER17_RS00650 0.44 +0.8 149,131 + HER17_RS00650 0.55 +0.3 149,131 + HER17_RS00650 0.55 +0.6 149,132 - HER17_RS00650 0.55 +0.1 149,132 - HER17_RS00650 0.55 -0.1 149,132 - HER17_RS00650 0.55 -0.4 149,239 + HER17_RS00650 0.69 +0.3 149,247 + HER17_RS00650 0.70 -0.2 149,282 + HER17_RS00650 0.74 -0.6 149,283 - HER17_RS00650 0.74 -0.1 149,421 + +1.1 149,468 - +0.1 149,470 + +0.6 149,504 - -0.2 149,590 + -0.7 149,591 - +0.7 149,609 - +0.0 149,618 - +0.5 149,618 - -0.7 149,618 - +0.7 149,665 + -0.9 149,665 + -0.3 149,665 + -0.2 149,666 - -0.4 149,666 - +0.9 149,666 - -0.6 149,666 - -0.6 149,666 - -0.5 149,732 + HER17_RS00655 0.13 +0.1 149,732 + HER17_RS00655 0.13 +0.5 149,829 + HER17_RS00655 0.17 +0.3 149,829 + HER17_RS00655 0.17 -0.2 149,867 - HER17_RS00655 0.19 +1.2 149,867 - HER17_RS00655 0.19 +0.4 149,867 - HER17_RS00655 0.19 +0.5 149,957 + HER17_RS00655 0.23 +0.3 149,958 - HER17_RS00655 0.23 -0.1 149,958 - HER17_RS00655 0.23 -1.0 149,958 - HER17_RS00655 0.23 -0.3 149,958 - HER17_RS00655 0.23 -0.3 149,987 - HER17_RS00655 0.24 +0.2 150,029 + HER17_RS00655 0.26 -0.2 150,029 + HER17_RS00655 0.26 +0.4 150,030 - HER17_RS00655 0.26 -0.1 150,030 - HER17_RS00655 0.26 +0.2 150,104 + HER17_RS00655 0.30 +0.6 150,336 + HER17_RS00655 0.40 -0.6 150,337 - HER17_RS00655 0.40 -0.2 150,409 + HER17_RS00655 0.44 +0.4 150,409 + HER17_RS00655 0.44 -0.2 150,410 - HER17_RS00655 0.44 -0.0 150,410 - HER17_RS00655 0.44 +0.0 150,414 + HER17_RS00655 0.44 +0.3 150,414 + HER17_RS00655 0.44 +0.4 150,415 - HER17_RS00655 0.44 -0.6 150,415 - HER17_RS00655 0.44 +0.4 150,415 - HER17_RS00655 0.44 -0.3 150,433 + HER17_RS00655 0.45 -0.0 150,433 + HER17_RS00655 0.45 +0.4 150,433 + HER17_RS00655 0.45 -0.2 150,434 - HER17_RS00655 0.45 -0.5 150,434 - HER17_RS00655 0.45 -0.7 150,434 - HER17_RS00655 0.45 +0.7 150,722 - HER17_RS00655 0.58 +0.7 150,757 + HER17_RS00655 0.60 -0.4 150,757 + HER17_RS00655 0.60 +0.5 150,757 + HER17_RS00655 0.60 +0.1 150,758 - HER17_RS00655 0.60 +0.4 150,758 - HER17_RS00655 0.60 -1.0 150,758 - HER17_RS00655 0.60 -0.4 150,758 - HER17_RS00655 0.60 -0.6 150,784 + HER17_RS00655 0.61 -0.9 150,784 + HER17_RS00655 0.61 +0.3 150,785 - HER17_RS00655 0.61 +1.1 150,794 + HER17_RS00655 0.61 -0.4 150,795 - HER17_RS00655 0.61 +0.1 150,833 + HER17_RS00655 0.63 -0.2 150,854 - HER17_RS00655 0.64 +1.4 150,905 + HER17_RS00655 0.66 -0.4 150,905 + HER17_RS00655 0.66 -0.4 150,905 + HER17_RS00655 0.66 +0.4 150,906 - HER17_RS00655 0.66 +0.5 150,906 - HER17_RS00655 0.66 +0.1 150,906 - HER17_RS00655 0.66 -0.2 150,906 - HER17_RS00655 0.66 -0.4 150,906 - HER17_RS00655 0.66 +0.4 150,907 + HER17_RS00655 0.67 -0.1 150,907 + HER17_RS00655 0.67 -1.2 150,907 + HER17_RS00655 0.67 +1.2 150,907 + HER17_RS00655 0.67 +0.7 150,907 + HER17_RS00655 0.67 +0.1 150,908 - HER17_RS00655 0.67 +0.4 150,908 - HER17_RS00655 0.67 +0.4 150,908 - HER17_RS00655 0.67 +0.1 150,908 - HER17_RS00655 0.67 -0.1 151,015 + HER17_RS00655 0.71 -0.5 151,015 + HER17_RS00655 0.71 +0.8 151,016 - HER17_RS00655 0.72 +0.3 151,016 - HER17_RS00655 0.72 +0.4 151,016 - HER17_RS00655 0.72 +0.2 151,050 + HER17_RS00655 0.73 +0.5 151,056 + HER17_RS00655 0.73 +0.1 151,056 + HER17_RS00655 0.73 -0.8 151,056 + HER17_RS00655 0.73 -0.1 151,056 + HER17_RS00655 0.73 +1.6 151,057 - HER17_RS00655 0.73 -0.9 151,057 - HER17_RS00655 0.73 -0.0 151,057 - HER17_RS00655 0.73 +0.2 151,057 - HER17_RS00655 0.73 -0.5 151,057 - HER17_RS00655 0.73 +0.4 151,057 - HER17_RS00655 0.73 +1.4 151,085 + HER17_RS00655 0.75 +0.3 151,086 - HER17_RS00655 0.75 -0.1 151,086 - HER17_RS00655 0.75 +0.3 151,086 - HER17_RS00655 0.75 +0.5 151,087 + HER17_RS00655 0.75 -0.1 151,088 - HER17_RS00655 0.75 -1.2 151,209 - HER17_RS00655 0.80 +0.7 151,247 + HER17_RS00655 0.82 +0.3 151,248 - HER17_RS00655 0.82 +0.5 151,485 - -0.6 151,513 + +0.4 151,514 - -1.1 151,641 + -1.6 151,641 + +0.9 151,642 - +1.3 151,696 - +0.4 151,724 + -0.4 151,726 + +1.1 151,726 + +0.4 151,727 - +0.6 151,727 - +0.0 151,740 + -0.1 151,741 - +0.3 151,786 + +0.2 151,788 + -0.2 151,788 + -0.3 151,913 + +0.5 151,913 + +0.3 152,107 + HER17_RS00660 0.20 -0.2 152,244 + HER17_RS00660 0.30 +0.3 152,384 + HER17_RS00660 0.41 -0.7 152,583 + HER17_RS00660 0.55 +0.0 152,584 - HER17_RS00660 0.55 -3.0 152,584 - HER17_RS00660 0.55 -1.6
Or see this region's nucleotide sequence