Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS00640 and HER17_RS00645 are separated by 310 nucleotides HER17_RS00645 and HER17_RS00650 are separated by 10 nucleotides HER17_RS00650 and HER17_RS00655 overlap by 31 nucleotides
HER17_RS00640: HER17_RS00640 - hypothetical protein, at 147,608 to 147,904
_RS00640
HER17_RS00645: HER17_RS00645 - tRNA (cytidine(34)-2'-O)-methyltransferase, at 148,215 to 148,679
_RS00645
HER17_RS00650: HER17_RS00650 - DUF3142 domain-containing protein, at 148,690 to 149,490
_RS00650
HER17_RS00655: HER17_RS00655 - hypothetical protein, at 149,460 to 151,634
_RS00655
Position (kb) 148
149
150 Strain fitness (log2 ratio) -2
-1
0
1
2 at 147.725 kb on - strand, within HER17_RS00640 at 147.725 kb on - strand, within HER17_RS00640 at 147.763 kb on + strand, within HER17_RS00640 at 147.764 kb on - strand, within HER17_RS00640 at 147.877 kb on - strand at 147.877 kb on - strand at 147.885 kb on - strand at 147.892 kb on + strand at 147.892 kb on + strand at 147.893 kb on - strand at 147.906 kb on - strand at 147.906 kb on - strand at 147.937 kb on - strand at 147.973 kb on - strand at 147.973 kb on - strand at 147.973 kb on - strand at 147.973 kb on - strand at 148.026 kb on + strand at 148.026 kb on + strand at 148.048 kb on + strand at 148.092 kb on + strand at 148.123 kb on + strand at 148.175 kb on - strand at 148.176 kb on + strand at 148.176 kb on + strand at 148.176 kb on + strand at 148.176 kb on + strand at 148.177 kb on - strand at 148.210 kb on - strand at 148.233 kb on + strand at 148.233 kb on + strand at 148.234 kb on - strand at 148.234 kb on - strand at 148.234 kb on - strand at 148.266 kb on - strand, within HER17_RS00645 at 148.266 kb on - strand, within HER17_RS00645 at 148.266 kb on - strand, within HER17_RS00645 at 148.266 kb on - strand, within HER17_RS00645 at 148.268 kb on + strand, within HER17_RS00645 at 148.295 kb on + strand, within HER17_RS00645 at 148.295 kb on + strand, within HER17_RS00645 at 148.365 kb on + strand, within HER17_RS00645 at 148.394 kb on + strand, within HER17_RS00645 at 148.395 kb on - strand, within HER17_RS00645 at 148.448 kb on + strand, within HER17_RS00645 at 148.485 kb on + strand, within HER17_RS00645 at 148.485 kb on + strand, within HER17_RS00645 at 148.486 kb on - strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.502 kb on - strand, within HER17_RS00645 at 148.502 kb on - strand, within HER17_RS00645 at 148.502 kb on - strand, within HER17_RS00645 at 148.502 kb on - strand, within HER17_RS00645 at 148.502 kb on - strand, within HER17_RS00645 at 148.502 kb on - strand, within HER17_RS00645 at 148.502 kb on - strand, within HER17_RS00645 at 148.502 kb on - strand, within HER17_RS00645 at 148.502 kb on - strand, within HER17_RS00645 at 148.502 kb on - strand, within HER17_RS00645 at 148.543 kb on + strand, within HER17_RS00645 at 148.544 kb on - strand, within HER17_RS00645 at 148.544 kb on - strand, within HER17_RS00645 at 148.544 kb on - strand, within HER17_RS00645 at 148.544 kb on - strand, within HER17_RS00645 at 148.544 kb on - strand, within HER17_RS00645 at 148.547 kb on + strand, within HER17_RS00645 at 148.547 kb on + strand, within HER17_RS00645 at 148.595 kb on + strand, within HER17_RS00645 at 148.634 kb on + strand at 148.634 kb on + strand at 148.634 kb on + strand at 148.634 kb on + strand at 148.634 kb on + strand at 148.634 kb on + strand at 148.634 kb on + strand at 148.634 kb on + strand at 148.634 kb on + strand at 148.634 kb on + strand at 148.634 kb on + strand at 148.635 kb on - strand at 148.635 kb on - strand at 148.635 kb on - strand at 148.635 kb on - strand at 148.635 kb on - strand at 148.635 kb on - strand at 148.635 kb on - strand at 148.635 kb on - strand at 148.638 kb on + strand at 148.638 kb on + strand at 148.638 kb on + strand at 148.638 kb on + strand at 148.638 kb on + strand at 148.638 kb on + strand at 148.638 kb on + strand at 148.639 kb on - strand at 148.639 kb on - strand at 148.639 kb on - strand at 148.639 kb on - strand at 148.677 kb on + strand at 148.677 kb on + strand at 148.678 kb on - strand at 148.681 kb on + strand at 148.681 kb on + strand at 148.681 kb on + strand at 148.681 kb on + strand at 148.681 kb on + strand at 148.681 kb on + strand at 148.682 kb on - strand at 148.682 kb on - strand at 148.682 kb on - strand at 148.682 kb on - strand at 148.682 kb on - strand at 148.682 kb on - strand at 148.691 kb on + strand at 148.691 kb on + strand at 148.757 kb on + strand at 148.757 kb on + strand at 148.758 kb on - strand at 148.758 kb on - strand at 148.813 kb on + strand, within HER17_RS00650 at 148.859 kb on + strand, within HER17_RS00650 at 148.859 kb on + strand, within HER17_RS00650 at 148.860 kb on - strand, within HER17_RS00650 at 148.868 kb on + strand, within HER17_RS00650 at 148.878 kb on + strand, within HER17_RS00650 at 148.878 kb on + strand, within HER17_RS00650 at 148.879 kb on - strand, within HER17_RS00650 at 148.879 kb on - strand, within HER17_RS00650 at 148.895 kb on + strand, within HER17_RS00650 at 148.984 kb on - strand, within HER17_RS00650 at 148.986 kb on + strand, within HER17_RS00650 at 148.987 kb on - strand, within HER17_RS00650 at 148.987 kb on - strand, within HER17_RS00650 at 149.020 kb on + strand, within HER17_RS00650 at 149.042 kb on + strand, within HER17_RS00650 at 149.042 kb on + strand, within HER17_RS00650 at 149.042 kb on + strand, within HER17_RS00650 at 149.043 kb on - strand, within HER17_RS00650 at 149.131 kb on + strand, within HER17_RS00650 at 149.131 kb on + strand, within HER17_RS00650 at 149.132 kb on - strand, within HER17_RS00650 at 149.132 kb on - strand, within HER17_RS00650 at 149.132 kb on - strand, within HER17_RS00650 at 149.239 kb on + strand, within HER17_RS00650 at 149.247 kb on + strand, within HER17_RS00650 at 149.282 kb on + strand, within HER17_RS00650 at 149.283 kb on - strand, within HER17_RS00650 at 149.421 kb on + strand at 149.468 kb on - strand at 149.470 kb on + strand at 149.504 kb on - strand at 149.590 kb on + strand at 149.591 kb on - strand at 149.609 kb on - strand at 149.618 kb on - strand at 149.618 kb on - strand at 149.618 kb on - strand at 149.665 kb on + strand at 149.665 kb on + strand at 149.665 kb on + strand at 149.666 kb on - strand at 149.666 kb on - strand at 149.666 kb on - strand at 149.666 kb on - strand at 149.666 kb on - strand at 149.732 kb on + strand, within HER17_RS00655 at 149.732 kb on + strand, within HER17_RS00655 at 149.829 kb on + strand, within HER17_RS00655 at 149.829 kb on + strand, within HER17_RS00655 at 149.867 kb on - strand, within HER17_RS00655 at 149.867 kb on - strand, within HER17_RS00655 at 149.867 kb on - strand, within HER17_RS00655 at 149.957 kb on + strand, within HER17_RS00655 at 149.958 kb on - strand, within HER17_RS00655 at 149.958 kb on - strand, within HER17_RS00655 at 149.958 kb on - strand, within HER17_RS00655 at 149.958 kb on - strand, within HER17_RS00655 at 149.987 kb on - strand, within HER17_RS00655 at 150.029 kb on + strand, within HER17_RS00655 at 150.029 kb on + strand, within HER17_RS00655 at 150.030 kb on - strand, within HER17_RS00655 at 150.030 kb on - strand, within HER17_RS00655 at 150.104 kb on + strand, within HER17_RS00655 at 150.336 kb on + strand, within HER17_RS00655 at 150.337 kb on - strand, within HER17_RS00655 at 150.409 kb on + strand, within HER17_RS00655 at 150.409 kb on + strand, within HER17_RS00655 at 150.410 kb on - strand, within HER17_RS00655 at 150.410 kb on - strand, within HER17_RS00655 at 150.414 kb on + strand, within HER17_RS00655 at 150.414 kb on + strand, within HER17_RS00655 at 150.415 kb on - strand, within HER17_RS00655 at 150.415 kb on - strand, within HER17_RS00655 at 150.415 kb on - strand, within HER17_RS00655 at 150.433 kb on + strand, within HER17_RS00655 at 150.433 kb on + strand, within HER17_RS00655 at 150.433 kb on + strand, within HER17_RS00655 at 150.434 kb on - strand, within HER17_RS00655 at 150.434 kb on - strand, within HER17_RS00655 at 150.434 kb on - strand, within HER17_RS00655
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 147,725 - HER17_RS00640 0.39 +0.3 147,725 - HER17_RS00640 0.39 +0.4 147,763 + HER17_RS00640 0.52 +0.5 147,764 - HER17_RS00640 0.53 +0.0 147,877 - +0.1 147,877 - +0.1 147,885 - -0.2 147,892 + +1.1 147,892 + -0.1 147,893 - -0.3 147,906 - -0.7 147,906 - +0.4 147,937 - +0.7 147,973 - -0.1 147,973 - +0.3 147,973 - +1.1 147,973 - -0.3 148,026 + +0.6 148,026 + +1.0 148,048 + -0.4 148,092 + -0.5 148,123 + +0.2 148,175 - +0.2 148,176 + +0.3 148,176 + +0.2 148,176 + -0.2 148,176 + -0.1 148,177 - -0.3 148,210 - -0.9 148,233 + +0.2 148,233 + -1.5 148,234 - -0.0 148,234 - +0.2 148,234 - -0.5 148,266 - HER17_RS00645 0.11 -0.3 148,266 - HER17_RS00645 0.11 -0.5 148,266 - HER17_RS00645 0.11 -0.0 148,266 - HER17_RS00645 0.11 -0.1 148,268 + HER17_RS00645 0.11 -0.4 148,295 + HER17_RS00645 0.17 +0.3 148,295 + HER17_RS00645 0.17 +0.3 148,365 + HER17_RS00645 0.32 -1.1 148,394 + HER17_RS00645 0.38 -0.2 148,395 - HER17_RS00645 0.39 +1.6 148,448 + HER17_RS00645 0.50 +0.1 148,485 + HER17_RS00645 0.58 +0.1 148,485 + HER17_RS00645 0.58 +0.3 148,486 - HER17_RS00645 0.58 -1.2 148,501 + HER17_RS00645 0.62 +0.5 148,501 + HER17_RS00645 0.62 -0.9 148,501 + HER17_RS00645 0.62 -0.5 148,501 + HER17_RS00645 0.62 -0.3 148,501 + HER17_RS00645 0.62 -0.0 148,501 + HER17_RS00645 0.62 +0.3 148,501 + HER17_RS00645 0.62 +0.1 148,501 + HER17_RS00645 0.62 -0.3 148,501 + HER17_RS00645 0.62 -0.1 148,501 + HER17_RS00645 0.62 -0.3 148,501 + HER17_RS00645 0.62 -0.7 148,501 + HER17_RS00645 0.62 -0.3 148,501 + HER17_RS00645 0.62 +0.8 148,501 + HER17_RS00645 0.62 +0.5 148,501 + HER17_RS00645 0.62 -0.0 148,502 - HER17_RS00645 0.62 +0.2 148,502 - HER17_RS00645 0.62 -0.9 148,502 - HER17_RS00645 0.62 -0.3 148,502 - HER17_RS00645 0.62 +0.5 148,502 - HER17_RS00645 0.62 -0.3 148,502 - HER17_RS00645 0.62 -0.4 148,502 - HER17_RS00645 0.62 -0.2 148,502 - HER17_RS00645 0.62 +0.5 148,502 - HER17_RS00645 0.62 +0.4 148,502 - HER17_RS00645 0.62 +1.2 148,543 + HER17_RS00645 0.71 -0.4 148,544 - HER17_RS00645 0.71 +0.5 148,544 - HER17_RS00645 0.71 -1.0 148,544 - HER17_RS00645 0.71 -0.9 148,544 - HER17_RS00645 0.71 -0.5 148,544 - HER17_RS00645 0.71 +0.3 148,547 + HER17_RS00645 0.71 -1.0 148,547 + HER17_RS00645 0.71 +0.1 148,595 + HER17_RS00645 0.82 +0.6 148,634 + +0.3 148,634 + +0.5 148,634 + -0.1 148,634 + +0.4 148,634 + +0.8 148,634 + -0.5 148,634 + -0.6 148,634 + +0.7 148,634 + +0.5 148,634 + -0.2 148,634 + -1.2 148,635 - +0.1 148,635 - +0.3 148,635 - +0.4 148,635 - +1.1 148,635 - -1.0 148,635 - -0.5 148,635 - -0.9 148,635 - +0.1 148,638 + +0.0 148,638 + +0.4 148,638 + -0.4 148,638 + +0.4 148,638 + +0.2 148,638 + +1.0 148,638 + -0.1 148,639 - +0.8 148,639 - +0.0 148,639 - +0.5 148,639 - -0.4 148,677 + -0.1 148,677 + -0.0 148,678 - -0.3 148,681 + -0.1 148,681 + +2.0 148,681 + +0.1 148,681 + -0.2 148,681 + +0.4 148,681 + -2.7 148,682 - -0.4 148,682 - +0.4 148,682 - +0.7 148,682 - +0.9 148,682 - -0.5 148,682 - +0.3 148,691 + -0.4 148,691 + -1.1 148,757 + -0.9 148,757 + -0.2 148,758 - +0.5 148,758 - +0.4 148,813 + HER17_RS00650 0.15 -1.3 148,859 + HER17_RS00650 0.21 +0.4 148,859 + HER17_RS00650 0.21 -0.4 148,860 - HER17_RS00650 0.21 +0.1 148,868 + HER17_RS00650 0.22 +0.2 148,878 + HER17_RS00650 0.23 +0.1 148,878 + HER17_RS00650 0.23 -0.7 148,879 - HER17_RS00650 0.24 +0.3 148,879 - HER17_RS00650 0.24 +0.8 148,895 + HER17_RS00650 0.26 +0.3 148,984 - HER17_RS00650 0.37 -0.6 148,986 + HER17_RS00650 0.37 +0.4 148,987 - HER17_RS00650 0.37 -0.2 148,987 - HER17_RS00650 0.37 +0.1 149,020 + HER17_RS00650 0.41 +0.3 149,042 + HER17_RS00650 0.44 +1.4 149,042 + HER17_RS00650 0.44 -0.1 149,042 + HER17_RS00650 0.44 +2.3 149,043 - HER17_RS00650 0.44 +0.8 149,131 + HER17_RS00650 0.55 +0.3 149,131 + HER17_RS00650 0.55 +0.6 149,132 - HER17_RS00650 0.55 +0.1 149,132 - HER17_RS00650 0.55 -0.1 149,132 - HER17_RS00650 0.55 -0.4 149,239 + HER17_RS00650 0.69 +0.3 149,247 + HER17_RS00650 0.70 -0.2 149,282 + HER17_RS00650 0.74 -0.6 149,283 - HER17_RS00650 0.74 -0.1 149,421 + +1.1 149,468 - +0.1 149,470 + +0.6 149,504 - -0.2 149,590 + -0.7 149,591 - +0.7 149,609 - +0.0 149,618 - +0.5 149,618 - -0.7 149,618 - +0.7 149,665 + -0.9 149,665 + -0.3 149,665 + -0.2 149,666 - -0.4 149,666 - +0.9 149,666 - -0.6 149,666 - -0.6 149,666 - -0.5 149,732 + HER17_RS00655 0.13 +0.1 149,732 + HER17_RS00655 0.13 +0.5 149,829 + HER17_RS00655 0.17 +0.3 149,829 + HER17_RS00655 0.17 -0.2 149,867 - HER17_RS00655 0.19 +1.2 149,867 - HER17_RS00655 0.19 +0.4 149,867 - HER17_RS00655 0.19 +0.5 149,957 + HER17_RS00655 0.23 +0.3 149,958 - HER17_RS00655 0.23 -0.1 149,958 - HER17_RS00655 0.23 -1.0 149,958 - HER17_RS00655 0.23 -0.3 149,958 - HER17_RS00655 0.23 -0.3 149,987 - HER17_RS00655 0.24 +0.2 150,029 + HER17_RS00655 0.26 -0.2 150,029 + HER17_RS00655 0.26 +0.4 150,030 - HER17_RS00655 0.26 -0.1 150,030 - HER17_RS00655 0.26 +0.2 150,104 + HER17_RS00655 0.30 +0.6 150,336 + HER17_RS00655 0.40 -0.6 150,337 - HER17_RS00655 0.40 -0.2 150,409 + HER17_RS00655 0.44 +0.4 150,409 + HER17_RS00655 0.44 -0.2 150,410 - HER17_RS00655 0.44 -0.0 150,410 - HER17_RS00655 0.44 +0.0 150,414 + HER17_RS00655 0.44 +0.3 150,414 + HER17_RS00655 0.44 +0.4 150,415 - HER17_RS00655 0.44 -0.6 150,415 - HER17_RS00655 0.44 +0.4 150,415 - HER17_RS00655 0.44 -0.3 150,433 + HER17_RS00655 0.45 -0.0 150,433 + HER17_RS00655 0.45 +0.4 150,433 + HER17_RS00655 0.45 -0.2 150,434 - HER17_RS00655 0.45 -0.5 150,434 - HER17_RS00655 0.45 -0.7 150,434 - HER17_RS00655 0.45 +0.7
Or see this region's nucleotide sequence