Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS00590

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
138,899	+				+0.5
138,963	+		HER17_RS21895	0.11	+0.8
138,964	-		HER17_RS21895	0.11	+0.4
138,969	+		HER17_RS21895	0.14	-0.3
138,969	+		HER17_RS21895	0.14	+0.6
138,970	-		HER17_RS21895	0.15	-0.1
138,970	-		HER17_RS21895	0.15	-0.3
138,970	-		HER17_RS21895	0.15	+0.0
139,027	-		HER17_RS21895	0.48	+0.3
139,128	+				-0.2
139,128	+				-0.9
139,128	+				+0.2
139,129	-				+0.1
139,129	-				-0.3
139,129	-				-0.1
139,129	-				+0.2
139,129	-				-0.1
139,129	-				+0.2
139,143	+				+0.4
139,147	+				-0.8
139,148	-				+0.4
139,148	-				-0.5
139,173	-				+1.2
139,178	+				-0.0
139,285	+				+0.3
139,285	+				-0.6
139,286	-				+0.2
139,286	-				+0.5
139,286	-				-0.1
139,286	-				+0.9
139,286	-				+0.2
139,298	-				-0.5
139,311	-		HER17_RS00585	0.11	-0.8
139,359	+		HER17_RS00585	0.18	+0.5
139,359	+		HER17_RS00585	0.18	+0.1
139,360	-		HER17_RS00585	0.18	+0.1
139,360	-		HER17_RS00585	0.18	-0.4
139,372	+		HER17_RS00585	0.20	-0.5
139,372	+		HER17_RS00585	0.20	-0.6
139,373	-		HER17_RS00585	0.20	+0.3
139,373	-		HER17_RS00585	0.20	-0.2
139,405	+		HER17_RS00585	0.25	-0.5
139,405	+		HER17_RS00585	0.25	+0.0
139,405	+		HER17_RS00585	0.25	+0.3
139,408	+		HER17_RS00585	0.25	-0.4
139,408	+		HER17_RS00585	0.25	-1.3
139,408	+		HER17_RS00585	0.25	+0.0
139,408	+		HER17_RS00585	0.25	-1.6
139,409	-		HER17_RS00585	0.25	-0.3
139,416	+		HER17_RS00585	0.26	-0.3
139,416	+		HER17_RS00585	0.26	-0.5
139,416	+		HER17_RS00585	0.26	+0.3
139,417	-		HER17_RS00585	0.26	+1.2
139,421	-		HER17_RS00585	0.27	+0.1
139,421	-		HER17_RS00585	0.27	+0.4
139,422	+		HER17_RS00585	0.27	-1.5
139,530	+		HER17_RS00585	0.43	-0.9
139,530	+		HER17_RS00585	0.43	+0.1
139,531	-		HER17_RS00585	0.43	+0.4
139,563	+		HER17_RS00585	0.47	+0.3
139,563	+		HER17_RS00585	0.47	-0.7
139,564	-		HER17_RS00585	0.47	+0.1
139,564	-		HER17_RS00585	0.47	+0.6
139,564	-		HER17_RS00585	0.47	-1.7
139,594	-		HER17_RS00585	0.52	-0.4
139,599	+		HER17_RS00585	0.52	+0.0
139,608	+		HER17_RS00585	0.54	+0.5
139,609	-		HER17_RS00585	0.54	+0.0
139,609	-		HER17_RS00585	0.54	-0.7
139,609	-		HER17_RS00585	0.54	-0.3
139,635	-		HER17_RS00585	0.58	-2.5
139,675	+		HER17_RS00585	0.63	-0.1
139,679	+		HER17_RS00585	0.64	+0.6
139,680	-		HER17_RS00585	0.64	-0.8
139,754	+		HER17_RS00585	0.75	-0.2
139,792	-		HER17_RS00585	0.80	-1.7
139,834	-		HER17_RS00585	0.86	+0.2
139,844	+		HER17_RS00585	0.88	+0.8
139,845	-		HER17_RS00585	0.88	-0.0
139,845	-		HER17_RS00585	0.88	-1.7
139,845	-		HER17_RS00585	0.88	-0.6
139,852	+		HER17_RS00585	0.89	+0.4
139,852	+		HER17_RS00585	0.89	-0.3
139,852	+		HER17_RS00585	0.89	+0.9
139,852	+		HER17_RS00585	0.89	-0.5
139,852	+		HER17_RS00585	0.89	+0.1
139,853	-		HER17_RS00585	0.89	+0.3
139,853	-		HER17_RS00585	0.89	+0.6
139,853	-		HER17_RS00585	0.89	+1.9
139,855	-		HER17_RS00585	0.89	-0.4
139,877	+				-0.6
139,877	+				-0.6
139,877	+				+0.2
139,878	-				-0.2
139,881	+				+0.1
139,882	-				+0.7
139,882	-				+0.3
139,882	-				-0.6
139,882	-				-0.0
139,882	-				+0.5
139,948	+		HER17_RS00590	0.12	+0.5
139,948	+		HER17_RS00590	0.12	+0.1
139,948	+		HER17_RS00590	0.12	+1.0
139,948	+		HER17_RS00590	0.12	-0.2
139,949	-		HER17_RS00590	0.12	-0.4
139,992	-		HER17_RS00590	0.21	-0.2
140,072	-		HER17_RS00590	0.39	-0.3
140,072	-		HER17_RS00590	0.39	-0.7
140,072	-		HER17_RS00590	0.39	+0.8
140,086	+		HER17_RS00590	0.42	-0.5
140,087	-		HER17_RS00590	0.42	+0.6
140,164	+		HER17_RS00590	0.59	+0.5
140,168	-		HER17_RS00590	0.60	-0.2
140,168	-		HER17_RS00590	0.60	-0.3
140,168	-		HER17_RS00590	0.60	-2.4
140,199	+		HER17_RS00590	0.67	+0.5
140,199	+		HER17_RS00590	0.67	-0.0
140,199	+		HER17_RS00590	0.67	+0.5
140,199	+		HER17_RS00590	0.67	-0.5
140,200	-		HER17_RS00590	0.67	+1.0
140,207	+		HER17_RS00590	0.69	-0.8
140,207	+		HER17_RS00590	0.69	-0.7
140,207	+		HER17_RS00590	0.69	+0.2
140,207	+		HER17_RS00590	0.69	-0.1
140,208	-		HER17_RS00590	0.69	+0.1
140,208	-		HER17_RS00590	0.69	+0.5
140,208	-		HER17_RS00590	0.69	-1.3
140,208	-		HER17_RS00590	0.69	-0.2
140,211	+		HER17_RS00590	0.70	+1.9
140,211	+		HER17_RS00590	0.70	+1.0
140,212	-		HER17_RS00590	0.70	+0.1
140,228	-		HER17_RS00590	0.74	+0.2
140,237	+		HER17_RS00590	0.75	+0.4
140,238	-		HER17_RS00590	0.76	+0.1
140,258	+		HER17_RS00590	0.80	-0.6
140,258	+		HER17_RS00590	0.80	-0.1
140,259	-		HER17_RS00590	0.80	-0.8
140,282	-		HER17_RS00590	0.85	-0.7
140,289	+		HER17_RS00590	0.87	-0.2
140,289	+		HER17_RS00590	0.87	+0.4
140,290	-		HER17_RS00590	0.87	-0.4
140,290	-		HER17_RS00590	0.87	-0.8
140,290	-		HER17_RS00590	0.87	-0.5
140,290	-		HER17_RS00590	0.87	-0.9
140,293	+		HER17_RS00590	0.88	+0.2
140,293	+		HER17_RS00590	0.88	-0.2
140,293	+		HER17_RS00590	0.88	+0.3
140,293	+		HER17_RS00590	0.88	-1.4
140,293	+		HER17_RS00590	0.88	-0.4
140,293	+		HER17_RS00590	0.88	-0.5
140,293	+		HER17_RS00590	0.88	+0.4
140,294	-		HER17_RS00590	0.88	-1.0
140,294	-		HER17_RS00590	0.88	-0.3
140,294	-		HER17_RS00590	0.88	+1.7
140,294	-		HER17_RS00590	0.88	+0.6
140,294	-		HER17_RS00590	0.88	+0.9
140,294	-		HER17_RS00590	0.88	-0.7
140,294	-		HER17_RS00590	0.88	+0.0
140,294	-		HER17_RS00590	0.88	+0.3
140,295	+		HER17_RS00590	0.88	-0.6
140,295	+		HER17_RS00590	0.88	+0.5
140,295	+		HER17_RS00590	0.88	-0.6
140,295	+		HER17_RS00590	0.88	-0.6
140,295	+		HER17_RS00590	0.88	-1.8
140,295	+		HER17_RS00590	0.88	-0.3
140,295	+		HER17_RS00590	0.88	-1.0
140,295	+		HER17_RS00590	0.88	-1.4
140,295	+		HER17_RS00590	0.88	+0.1
140,296	-		HER17_RS00590	0.89	+0.4
140,296	-		HER17_RS00590	0.89	+0.2
140,296	-		HER17_RS00590	0.89	+0.2
140,296	-		HER17_RS00590	0.89	-0.0
140,296	-		HER17_RS00590	0.89	+0.0
140,379	+				-0.2
140,380	-				+0.2
140,400	+				+0.5
140,400	+				-0.2
140,422	+				+0.9
140,422	+				+0.7
140,423	-				-0.4
140,423	-				+0.2
140,430	+				-0.1
140,431	-				+0.6
140,431	-				+0.7
140,473	-				+1.8
140,473	-				+0.2
140,491	-		HER17_RS00595	0.12	+0.2
140,681	+		HER17_RS00595	0.80	-0.3
140,682	-		HER17_RS00595	0.80	-1.2
140,734	+				+0.5
140,734	+				+1.1
140,735	-				+0.2
140,743	+				+0.5
140,744	-				-0.1
140,753	-				+0.1
140,759	+				-0.2
140,759	+				+0.1
140,820	-				-1.0
140,837	+				+1.5
140,837	+				-0.1
140,837	+				+0.5
140,838	-				-1.0
140,838	-				+0.2
140,838	-				-0.1
140,838	-				-0.3
140,916	-		HER17_RS00600	0.35	-0.7
140,931	+		HER17_RS00600	0.40	+0.3
140,931	+		HER17_RS00600	0.40	-0.2
140,932	-		HER17_RS00600	0.40	-0.2
140,932	-		HER17_RS00600	0.40	-0.7
140,932	-		HER17_RS00600	0.40	+0.3
140,965	-		HER17_RS00600	0.51	-0.4
140,966	+		HER17_RS00600	0.52	-0.0
140,966	+		HER17_RS00600	0.52	-0.5
140,967	-		HER17_RS00600	0.52	+1.5
140,967	-		HER17_RS00600	0.52	-0.4
140,967	-		HER17_RS00600	0.52	-0.1
140,968	+		HER17_RS00600	0.52	-1.1
140,989	-		HER17_RS00600	0.60	-0.4
141,040	+		HER17_RS00600	0.77	-0.1
141,055	+		HER17_RS00600	0.82	-0.6
141,055	+		HER17_RS00600	0.82	+0.2
141,056	-		HER17_RS00600	0.82	+0.6
141,056	-		HER17_RS00600	0.82	-0.3
141,102	-				-0.7
141,103	+				+0.0
141,103	+				-0.0
141,104	-				-0.9
141,104	-				-0.1
141,264	+		HER17_RS00605	0.67	+0.5
141,280	+		HER17_RS00605	0.74	-0.5
141,283	+		HER17_RS00605	0.75	-1.7
141,283	+		HER17_RS00605	0.75	-2.1
141,283	+		HER17_RS00605	0.75	-0.9
141,321	+				-0.9
141,321	+				-1.2
141,324	+				-1.1
141,336	+				-0.0
141,342	+				-0.5