Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS00330

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS00325 and HER17_RS00330 are separated by 213 nucleotidesHER17_RS00330 and HER17_RS00335 are separated by 329 nucleotides HER17_RS00325: HER17_RS00325 - O-acetylserine/cysteine exporter, at 72,741 to 73,652 _RS00325 HER17_RS00330: HER17_RS00330 - gamma-glutamyltransferase, at 73,866 to 75,644 _RS00330 HER17_RS00335: HER17_RS00335 - thiamine pyrophosphate-dependent enzyme, at 75,974 to 77,686 _RS00335 Position (kb) 73 74 75 76Strain fitness (log2 ratio) -2 -1 0 1 2at 72.905 kb on + strand, within HER17_RS00325at 72.905 kb on + strand, within HER17_RS00325at 72.905 kb on + strand, within HER17_RS00325at 72.906 kb on - strand, within HER17_RS00325at 72.906 kb on - strand, within HER17_RS00325at 72.906 kb on - strand, within HER17_RS00325at 72.906 kb on - strand, within HER17_RS00325at 72.930 kb on + strand, within HER17_RS00325at 72.931 kb on - strand, within HER17_RS00325at 72.935 kb on + strand, within HER17_RS00325at 72.935 kb on + strand, within HER17_RS00325at 72.936 kb on - strand, within HER17_RS00325at 72.936 kb on - strand, within HER17_RS00325at 72.936 kb on - strand, within HER17_RS00325at 73.015 kb on + strand, within HER17_RS00325at 73.016 kb on - strand, within HER17_RS00325at 73.019 kb on - strand, within HER17_RS00325at 73.173 kb on - strand, within HER17_RS00325at 73.235 kb on + strand, within HER17_RS00325at 73.344 kb on - strand, within HER17_RS00325at 73.344 kb on - strand, within HER17_RS00325at 73.361 kb on + strand, within HER17_RS00325at 73.361 kb on + strand, within HER17_RS00325at 73.362 kb on - strand, within HER17_RS00325at 73.362 kb on - strand, within HER17_RS00325at 73.362 kb on - strand, within HER17_RS00325at 73.366 kb on + strand, within HER17_RS00325at 73.367 kb on - strand, within HER17_RS00325at 73.393 kb on + strand, within HER17_RS00325at 73.394 kb on - strand, within HER17_RS00325at 73.394 kb on - strand, within HER17_RS00325at 73.394 kb on - strand, within HER17_RS00325at 73.394 kb on - strand, within HER17_RS00325at 73.394 kb on - strand, within HER17_RS00325at 73.404 kb on + strand, within HER17_RS00325at 73.404 kb on + strand, within HER17_RS00325at 73.583 kb on + strandat 73.584 kb on - strandat 73.627 kb on + strandat 73.628 kb on - strandat 73.657 kb on + strandat 73.657 kb on + strandat 73.657 kb on + strandat 73.657 kb on + strandat 73.657 kb on + strandat 73.657 kb on + strandat 73.658 kb on - strandat 73.658 kb on - strandat 73.658 kb on - strandat 73.658 kb on - strandat 73.658 kb on - strandat 73.658 kb on - strandat 73.658 kb on - strandat 73.676 kb on + strandat 73.701 kb on + strandat 73.709 kb on + strandat 73.736 kb on + strandat 73.745 kb on + strandat 73.827 kb on - strandat 73.873 kb on + strandat 74.001 kb on + strandat 74.093 kb on - strand, within HER17_RS00330at 74.130 kb on - strand, within HER17_RS00330at 74.211 kb on + strand, within HER17_RS00330at 74.211 kb on + strand, within HER17_RS00330at 74.211 kb on + strand, within HER17_RS00330at 74.211 kb on + strand, within HER17_RS00330at 74.211 kb on + strand, within HER17_RS00330at 74.212 kb on - strand, within HER17_RS00330at 74.212 kb on - strand, within HER17_RS00330at 74.212 kb on - strand, within HER17_RS00330at 74.259 kb on + strand, within HER17_RS00330at 74.357 kb on + strand, within HER17_RS00330at 74.358 kb on - strand, within HER17_RS00330at 74.562 kb on + strand, within HER17_RS00330at 74.563 kb on - strand, within HER17_RS00330at 74.644 kb on - strand, within HER17_RS00330at 74.675 kb on + strand, within HER17_RS00330at 74.675 kb on + strand, within HER17_RS00330at 74.675 kb on + strand, within HER17_RS00330at 74.676 kb on - strand, within HER17_RS00330at 74.676 kb on - strand, within HER17_RS00330at 74.676 kb on - strand, within HER17_RS00330at 74.680 kb on - strand, within HER17_RS00330at 74.680 kb on - strand, within HER17_RS00330at 74.751 kb on - strand, within HER17_RS00330at 74.751 kb on - strand, within HER17_RS00330at 74.787 kb on - strand, within HER17_RS00330at 74.787 kb on - strand, within HER17_RS00330at 74.835 kb on + strand, within HER17_RS00330at 74.835 kb on + strand, within HER17_RS00330at 74.835 kb on + strand, within HER17_RS00330at 74.835 kb on + strand, within HER17_RS00330at 74.836 kb on - strand, within HER17_RS00330at 74.836 kb on - strand, within HER17_RS00330at 74.836 kb on - strand, within HER17_RS00330at 74.836 kb on - strand, within HER17_RS00330at 74.836 kb on - strand, within HER17_RS00330at 74.836 kb on - strand, within HER17_RS00330at 74.836 kb on - strand, within HER17_RS00330at 74.911 kb on - strand, within HER17_RS00330at 74.911 kb on - strand, within HER17_RS00330at 74.911 kb on - strand, within HER17_RS00330at 75.012 kb on + strand, within HER17_RS00330at 75.054 kb on + strand, within HER17_RS00330at 75.054 kb on + strand, within HER17_RS00330at 75.054 kb on + strand, within HER17_RS00330at 75.054 kb on + strand, within HER17_RS00330at 75.055 kb on - strand, within HER17_RS00330at 75.055 kb on - strand, within HER17_RS00330at 75.055 kb on - strand, within HER17_RS00330at 75.055 kb on - strand, within HER17_RS00330at 75.055 kb on - strand, within HER17_RS00330at 75.056 kb on + strand, within HER17_RS00330at 75.086 kb on - strand, within HER17_RS00330at 75.185 kb on + strand, within HER17_RS00330at 75.186 kb on - strand, within HER17_RS00330at 75.338 kb on + strand, within HER17_RS00330at 75.402 kb on + strand, within HER17_RS00330at 75.402 kb on + strand, within HER17_RS00330at 75.402 kb on + strand, within HER17_RS00330at 75.402 kb on + strand, within HER17_RS00330at 75.402 kb on + strand, within HER17_RS00330at 75.403 kb on - strand, within HER17_RS00330at 75.403 kb on - strand, within HER17_RS00330at 75.403 kb on - strand, within HER17_RS00330at 75.403 kb on - strand, within HER17_RS00330at 75.403 kb on - strand, within HER17_RS00330at 75.588 kb on + strandat 75.697 kb on + strandat 75.698 kb on - strandat 75.753 kb on - strandat 75.753 kb on - strandat 75.771 kb on + strandat 75.808 kb on - strandat 75.818 kb on + strandat 75.843 kb on + strandat 75.843 kb on + strandat 75.844 kb on - strandat 75.861 kb on + strandat 75.861 kb on + strandat 75.899 kb on + strandat 75.952 kb on + strandat 75.963 kb on - strandat 76.045 kb on - strandat 76.058 kb on - strandat 76.063 kb on - strandat 76.081 kb on - strandat 76.344 kb on + strand, within HER17_RS00335at 76.364 kb on + strand, within HER17_RS00335at 76.368 kb on + strand, within HER17_RS00335at 76.369 kb on - strand, within HER17_RS00335at 76.369 kb on - strand, within HER17_RS00335at 76.407 kb on + strand, within HER17_RS00335at 76.434 kb on + strand, within HER17_RS00335at 76.454 kb on + strand, within HER17_RS00335at 76.458 kb on + strand, within HER17_RS00335at 76.543 kb on + strand, within HER17_RS00335

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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72,905 + HER17_RS00325 0.18 -0.1
72,905 + HER17_RS00325 0.18 -0.4
72,905 + HER17_RS00325 0.18 -0.7
72,906 - HER17_RS00325 0.18 +0.1
72,906 - HER17_RS00325 0.18 +0.6
72,906 - HER17_RS00325 0.18 +0.8
72,906 - HER17_RS00325 0.18 -0.1
72,930 + HER17_RS00325 0.21 -0.1
72,931 - HER17_RS00325 0.21 +0.1
72,935 + HER17_RS00325 0.21 +0.3
72,935 + HER17_RS00325 0.21 +1.9
72,936 - HER17_RS00325 0.21 -0.4
72,936 - HER17_RS00325 0.21 -0.7
72,936 - HER17_RS00325 0.21 +1.7
73,015 + HER17_RS00325 0.30 -0.6
73,016 - HER17_RS00325 0.30 +0.7
73,019 - HER17_RS00325 0.30 -0.6
73,173 - HER17_RS00325 0.47 +0.4
73,235 + HER17_RS00325 0.54 +0.2
73,344 - HER17_RS00325 0.66 -0.9
73,344 - HER17_RS00325 0.66 -0.2
73,361 + HER17_RS00325 0.68 -0.0
73,361 + HER17_RS00325 0.68 +0.0
73,362 - HER17_RS00325 0.68 -0.8
73,362 - HER17_RS00325 0.68 +0.1
73,362 - HER17_RS00325 0.68 -0.5
73,366 + HER17_RS00325 0.69 -0.4
73,367 - HER17_RS00325 0.69 -0.6
73,393 + HER17_RS00325 0.71 -0.5
73,394 - HER17_RS00325 0.72 -0.1
73,394 - HER17_RS00325 0.72 -0.3
73,394 - HER17_RS00325 0.72 +0.6
73,394 - HER17_RS00325 0.72 -0.2
73,394 - HER17_RS00325 0.72 -0.0
73,404 + HER17_RS00325 0.73 -0.4
73,404 + HER17_RS00325 0.73 -0.9
73,583 + +0.5
73,584 - -0.5
73,627 + -0.7
73,628 - +0.0
73,657 + -1.2
73,657 + -0.2
73,657 + -0.5
73,657 + -0.2
73,657 + +0.5
73,657 + +1.7
73,658 - +0.2
73,658 - -0.4
73,658 - +0.2
73,658 - +1.3
73,658 - +1.5
73,658 - -0.5
73,658 - +0.5
73,676 + +0.3
73,701 + -0.3
73,709 + +0.5
73,736 + +0.2
73,745 + +0.5
73,827 - +1.0
73,873 + -0.1
74,001 + +0.4
74,093 - HER17_RS00330 0.13 -0.1
74,130 - HER17_RS00330 0.15 -0.2
74,211 + HER17_RS00330 0.19 -0.7
74,211 + HER17_RS00330 0.19 +0.9
74,211 + HER17_RS00330 0.19 -0.2
74,211 + HER17_RS00330 0.19 +0.0
74,211 + HER17_RS00330 0.19 +0.6
74,212 - HER17_RS00330 0.19 +0.0
74,212 - HER17_RS00330 0.19 -0.6
74,212 - HER17_RS00330 0.19 +0.3
74,259 + HER17_RS00330 0.22 -0.6
74,357 + HER17_RS00330 0.28 -1.9
74,358 - HER17_RS00330 0.28 -0.5
74,562 + HER17_RS00330 0.39 +0.2
74,563 - HER17_RS00330 0.39 +0.3
74,644 - HER17_RS00330 0.44 +0.1
74,675 + HER17_RS00330 0.45 +0.2
74,675 + HER17_RS00330 0.45 -0.4
74,675 + HER17_RS00330 0.45 -0.3
74,676 - HER17_RS00330 0.46 +0.0
74,676 - HER17_RS00330 0.46 -0.6
74,676 - HER17_RS00330 0.46 +0.0
74,680 - HER17_RS00330 0.46 +0.0
74,680 - HER17_RS00330 0.46 -0.1
74,751 - HER17_RS00330 0.50 -0.5
74,751 - HER17_RS00330 0.50 +0.1
74,787 - HER17_RS00330 0.52 -0.7
74,787 - HER17_RS00330 0.52 +0.2
74,835 + HER17_RS00330 0.54 -0.2
74,835 + HER17_RS00330 0.54 +0.6
74,835 + HER17_RS00330 0.54 +0.8
74,835 + HER17_RS00330 0.54 +0.9
74,836 - HER17_RS00330 0.55 +0.9
74,836 - HER17_RS00330 0.55 +0.2
74,836 - HER17_RS00330 0.55 -0.9
74,836 - HER17_RS00330 0.55 +0.8
74,836 - HER17_RS00330 0.55 -0.4
74,836 - HER17_RS00330 0.55 -0.2
74,836 - HER17_RS00330 0.55 +0.2
74,911 - HER17_RS00330 0.59 +1.0
74,911 - HER17_RS00330 0.59 -0.8
74,911 - HER17_RS00330 0.59 -0.8
75,012 + HER17_RS00330 0.64 -0.3
75,054 + HER17_RS00330 0.67 -0.1
75,054 + HER17_RS00330 0.67 -2.4
75,054 + HER17_RS00330 0.67 +0.5
75,054 + HER17_RS00330 0.67 +0.8
75,055 - HER17_RS00330 0.67 -0.0
75,055 - HER17_RS00330 0.67 -1.0
75,055 - HER17_RS00330 0.67 +0.0
75,055 - HER17_RS00330 0.67 +0.0
75,055 - HER17_RS00330 0.67 +0.1
75,056 + HER17_RS00330 0.67 -0.8
75,086 - HER17_RS00330 0.69 +0.6
75,185 + HER17_RS00330 0.74 +1.1
75,186 - HER17_RS00330 0.74 -0.1
75,338 + HER17_RS00330 0.83 -0.1
75,402 + HER17_RS00330 0.86 -0.2
75,402 + HER17_RS00330 0.86 +0.0
75,402 + HER17_RS00330 0.86 +1.3
75,402 + HER17_RS00330 0.86 +0.2
75,402 + HER17_RS00330 0.86 -0.0
75,403 - HER17_RS00330 0.86 +0.5
75,403 - HER17_RS00330 0.86 +0.5
75,403 - HER17_RS00330 0.86 +0.2
75,403 - HER17_RS00330 0.86 +0.5
75,403 - HER17_RS00330 0.86 +0.4
75,588 + -0.6
75,697 + +0.1
75,698 - -0.2
75,753 - -0.9
75,753 - -0.9
75,771 + +0.2
75,808 - -0.8
75,818 + -1.0
75,843 + +0.7
75,843 + +0.2
75,844 - +1.0
75,861 + +0.1
75,861 + -0.1
75,899 + -0.1
75,952 + +1.1
75,963 - -0.7
76,045 - -0.1
76,058 - +0.2
76,063 - +0.5
76,081 - -1.0
76,344 + HER17_RS00335 0.22 -1.4
76,364 + HER17_RS00335 0.23 +0.1
76,368 + HER17_RS00335 0.23 +0.0
76,369 - HER17_RS00335 0.23 -0.4
76,369 - HER17_RS00335 0.23 +0.1
76,407 + HER17_RS00335 0.25 +0.4
76,434 + HER17_RS00335 0.27 -0.4
76,454 + HER17_RS00335 0.28 +0.7
76,458 + HER17_RS00335 0.28 +0.6
76,543 + HER17_RS00335 0.33 -0.7

Or see this region's nucleotide sequence