Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS00320 and HER17_RS00325 are separated by 162 nucleotides HER17_RS00325 and HER17_RS00330 are separated by 213 nucleotides
HER17_RS00320: HER17_RS00320 - aldose 1-epimerase family protein, at 71,370 to 72,578
_RS00320
HER17_RS00325: HER17_RS00325 - O-acetylserine/cysteine exporter, at 72,741 to 73,652
_RS00325
HER17_RS00330: HER17_RS00330 - gamma-glutamyltransferase, at 73,866 to 75,644
_RS00330
Position (kb) 72
73
74 Strain fitness (log2 ratio) -2
-1
0
1
2 at 71.820 kb on + strand, within HER17_RS00320 at 71.820 kb on + strand, within HER17_RS00320 at 71.820 kb on + strand, within HER17_RS00320 at 71.820 kb on + strand, within HER17_RS00320 at 71.820 kb on + strand, within HER17_RS00320 at 71.820 kb on + strand, within HER17_RS00320 at 71.821 kb on - strand, within HER17_RS00320 at 71.821 kb on - strand, within HER17_RS00320 at 71.821 kb on - strand, within HER17_RS00320 at 71.821 kb on - strand, within HER17_RS00320 at 71.821 kb on - strand, within HER17_RS00320 at 71.821 kb on - strand, within HER17_RS00320 at 71.970 kb on + strand, within HER17_RS00320 at 71.971 kb on - strand, within HER17_RS00320 at 72.027 kb on + strand, within HER17_RS00320 at 72.039 kb on + strand, within HER17_RS00320 at 72.048 kb on - strand, within HER17_RS00320 at 72.051 kb on + strand, within HER17_RS00320 at 72.051 kb on + strand, within HER17_RS00320 at 72.052 kb on - strand, within HER17_RS00320 at 72.129 kb on - strand, within HER17_RS00320 at 72.168 kb on + strand, within HER17_RS00320 at 72.169 kb on - strand, within HER17_RS00320 at 72.212 kb on + strand, within HER17_RS00320 at 72.237 kb on - strand, within HER17_RS00320 at 72.354 kb on + strand, within HER17_RS00320 at 72.354 kb on + strand, within HER17_RS00320 at 72.354 kb on + strand, within HER17_RS00320 at 72.355 kb on - strand, within HER17_RS00320 at 72.355 kb on - strand, within HER17_RS00320 at 72.355 kb on - strand, within HER17_RS00320 at 72.380 kb on + strand, within HER17_RS00320 at 72.381 kb on - strand, within HER17_RS00320 at 72.384 kb on + strand, within HER17_RS00320 at 72.384 kb on + strand, within HER17_RS00320 at 72.384 kb on + strand, within HER17_RS00320 at 72.384 kb on + strand, within HER17_RS00320 at 72.384 kb on + strand, within HER17_RS00320 at 72.384 kb on + strand, within HER17_RS00320 at 72.385 kb on - strand, within HER17_RS00320 at 72.385 kb on - strand, within HER17_RS00320 at 72.433 kb on + strand, within HER17_RS00320 at 72.468 kb on + strand at 72.468 kb on + strand at 72.468 kb on + strand at 72.482 kb on + strand at 72.482 kb on + strand at 72.539 kb on + strand at 72.539 kb on + strand at 72.540 kb on - strand at 72.577 kb on - strand at 72.583 kb on + strand at 72.583 kb on + strand at 72.583 kb on + strand at 72.583 kb on + strand at 72.584 kb on - strand at 72.584 kb on - strand at 72.584 kb on - strand at 72.584 kb on - strand at 72.637 kb on + strand at 72.637 kb on + strand at 72.652 kb on - strand at 72.660 kb on - strand at 72.660 kb on - strand at 72.679 kb on + strand at 72.680 kb on - strand at 72.690 kb on + strand at 72.690 kb on + strand at 72.691 kb on - strand at 72.710 kb on + strand at 72.710 kb on + strand at 72.710 kb on + strand at 72.711 kb on - strand at 72.721 kb on + strand at 72.721 kb on + strand at 72.721 kb on + strand at 72.784 kb on + strand at 72.842 kb on - strand, within HER17_RS00325 at 72.853 kb on + strand, within HER17_RS00325 at 72.905 kb on + strand, within HER17_RS00325 at 72.905 kb on + strand, within HER17_RS00325 at 72.905 kb on + strand, within HER17_RS00325 at 72.906 kb on - strand, within HER17_RS00325 at 72.906 kb on - strand, within HER17_RS00325 at 72.906 kb on - strand, within HER17_RS00325 at 72.906 kb on - strand, within HER17_RS00325 at 72.930 kb on + strand, within HER17_RS00325 at 72.931 kb on - strand, within HER17_RS00325 at 72.935 kb on + strand, within HER17_RS00325 at 72.935 kb on + strand, within HER17_RS00325 at 72.936 kb on - strand, within HER17_RS00325 at 72.936 kb on - strand, within HER17_RS00325 at 72.936 kb on - strand, within HER17_RS00325 at 73.015 kb on + strand, within HER17_RS00325 at 73.016 kb on - strand, within HER17_RS00325 at 73.019 kb on - strand, within HER17_RS00325 at 73.173 kb on - strand, within HER17_RS00325 at 73.235 kb on + strand, within HER17_RS00325 at 73.344 kb on - strand, within HER17_RS00325 at 73.344 kb on - strand, within HER17_RS00325 at 73.361 kb on + strand, within HER17_RS00325 at 73.361 kb on + strand, within HER17_RS00325 at 73.362 kb on - strand, within HER17_RS00325 at 73.362 kb on - strand, within HER17_RS00325 at 73.362 kb on - strand, within HER17_RS00325 at 73.366 kb on + strand, within HER17_RS00325 at 73.367 kb on - strand, within HER17_RS00325 at 73.393 kb on + strand, within HER17_RS00325 at 73.394 kb on - strand, within HER17_RS00325 at 73.394 kb on - strand, within HER17_RS00325 at 73.394 kb on - strand, within HER17_RS00325 at 73.394 kb on - strand, within HER17_RS00325 at 73.394 kb on - strand, within HER17_RS00325 at 73.404 kb on + strand, within HER17_RS00325 at 73.404 kb on + strand, within HER17_RS00325 at 73.583 kb on + strand at 73.584 kb on - strand at 73.627 kb on + strand at 73.628 kb on - strand at 73.657 kb on + strand at 73.657 kb on + strand at 73.657 kb on + strand at 73.657 kb on + strand at 73.657 kb on + strand at 73.657 kb on + strand at 73.658 kb on - strand at 73.658 kb on - strand at 73.658 kb on - strand at 73.658 kb on - strand at 73.658 kb on - strand at 73.658 kb on - strand at 73.658 kb on - strand at 73.676 kb on + strand at 73.701 kb on + strand at 73.709 kb on + strand at 73.736 kb on + strand at 73.745 kb on + strand at 73.827 kb on - strand at 73.873 kb on + strand at 74.001 kb on + strand at 74.093 kb on - strand, within HER17_RS00330 at 74.130 kb on - strand, within HER17_RS00330 at 74.211 kb on + strand, within HER17_RS00330 at 74.211 kb on + strand, within HER17_RS00330 at 74.211 kb on + strand, within HER17_RS00330 at 74.211 kb on + strand, within HER17_RS00330 at 74.211 kb on + strand, within HER17_RS00330 at 74.212 kb on - strand, within HER17_RS00330 at 74.212 kb on - strand, within HER17_RS00330 at 74.212 kb on - strand, within HER17_RS00330 at 74.259 kb on + strand, within HER17_RS00330 at 74.357 kb on + strand, within HER17_RS00330 at 74.358 kb on - strand, within HER17_RS00330 at 74.562 kb on + strand, within HER17_RS00330 at 74.563 kb on - strand, within HER17_RS00330 at 74.644 kb on - strand, within HER17_RS00330
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 71,820 + HER17_RS00320 0.37 +0.1 71,820 + HER17_RS00320 0.37 -0.2 71,820 + HER17_RS00320 0.37 -0.2 71,820 + HER17_RS00320 0.37 -0.3 71,820 + HER17_RS00320 0.37 -0.4 71,820 + HER17_RS00320 0.37 -0.1 71,821 - HER17_RS00320 0.37 +0.1 71,821 - HER17_RS00320 0.37 -0.5 71,821 - HER17_RS00320 0.37 -0.8 71,821 - HER17_RS00320 0.37 -0.1 71,821 - HER17_RS00320 0.37 -0.1 71,821 - HER17_RS00320 0.37 +0.1 71,970 + HER17_RS00320 0.50 +0.8 71,971 - HER17_RS00320 0.50 -0.6 72,027 + HER17_RS00320 0.54 -0.1 72,039 + HER17_RS00320 0.55 +0.2 72,048 - HER17_RS00320 0.56 -0.0 72,051 + HER17_RS00320 0.56 -1.1 72,051 + HER17_RS00320 0.56 -0.9 72,052 - HER17_RS00320 0.56 -1.5 72,129 - HER17_RS00320 0.63 -0.2 72,168 + HER17_RS00320 0.66 +0.2 72,169 - HER17_RS00320 0.66 +0.1 72,212 + HER17_RS00320 0.70 +0.2 72,237 - HER17_RS00320 0.72 -0.3 72,354 + HER17_RS00320 0.81 +0.5 72,354 + HER17_RS00320 0.81 -0.4 72,354 + HER17_RS00320 0.81 -1.8 72,355 - HER17_RS00320 0.81 +1.1 72,355 - HER17_RS00320 0.81 +0.2 72,355 - HER17_RS00320 0.81 +0.5 72,380 + HER17_RS00320 0.84 +0.1 72,381 - HER17_RS00320 0.84 -0.3 72,384 + HER17_RS00320 0.84 +0.3 72,384 + HER17_RS00320 0.84 -0.7 72,384 + HER17_RS00320 0.84 +0.3 72,384 + HER17_RS00320 0.84 +0.2 72,384 + HER17_RS00320 0.84 +0.3 72,384 + HER17_RS00320 0.84 +0.9 72,385 - HER17_RS00320 0.84 -0.2 72,385 - HER17_RS00320 0.84 +0.5 72,433 + HER17_RS00320 0.88 +0.3 72,468 + -0.5 72,468 + -0.1 72,468 + +0.3 72,482 + -0.7 72,482 + -2.1 72,539 + +0.3 72,539 + +0.5 72,540 - -0.3 72,577 - +1.0 72,583 + -1.0 72,583 + -1.0 72,583 + -0.2 72,583 + -0.0 72,584 - -0.2 72,584 - -0.2 72,584 - -0.5 72,584 - +0.5 72,637 + -0.5 72,637 + -0.3 72,652 - -0.5 72,660 - -0.1 72,660 - +0.2 72,679 + +0.3 72,680 - +0.2 72,690 + -0.7 72,690 + -0.7 72,691 - -0.3 72,710 + +0.1 72,710 + +0.1 72,710 + +0.2 72,711 - +0.5 72,721 + -0.8 72,721 + -0.5 72,721 + -0.6 72,784 + -0.9 72,842 - HER17_RS00325 0.11 +0.3 72,853 + HER17_RS00325 0.12 -0.1 72,905 + HER17_RS00325 0.18 -0.1 72,905 + HER17_RS00325 0.18 -0.4 72,905 + HER17_RS00325 0.18 -0.7 72,906 - HER17_RS00325 0.18 +0.1 72,906 - HER17_RS00325 0.18 +0.6 72,906 - HER17_RS00325 0.18 +0.8 72,906 - HER17_RS00325 0.18 -0.1 72,930 + HER17_RS00325 0.21 -0.1 72,931 - HER17_RS00325 0.21 +0.1 72,935 + HER17_RS00325 0.21 +0.3 72,935 + HER17_RS00325 0.21 +1.9 72,936 - HER17_RS00325 0.21 -0.4 72,936 - HER17_RS00325 0.21 -0.7 72,936 - HER17_RS00325 0.21 +1.7 73,015 + HER17_RS00325 0.30 -0.6 73,016 - HER17_RS00325 0.30 +0.7 73,019 - HER17_RS00325 0.30 -0.6 73,173 - HER17_RS00325 0.47 +0.4 73,235 + HER17_RS00325 0.54 +0.2 73,344 - HER17_RS00325 0.66 -0.9 73,344 - HER17_RS00325 0.66 -0.2 73,361 + HER17_RS00325 0.68 -0.0 73,361 + HER17_RS00325 0.68 +0.0 73,362 - HER17_RS00325 0.68 -0.8 73,362 - HER17_RS00325 0.68 +0.1 73,362 - HER17_RS00325 0.68 -0.5 73,366 + HER17_RS00325 0.69 -0.4 73,367 - HER17_RS00325 0.69 -0.6 73,393 + HER17_RS00325 0.71 -0.5 73,394 - HER17_RS00325 0.72 -0.1 73,394 - HER17_RS00325 0.72 -0.3 73,394 - HER17_RS00325 0.72 +0.6 73,394 - HER17_RS00325 0.72 -0.2 73,394 - HER17_RS00325 0.72 -0.0 73,404 + HER17_RS00325 0.73 -0.4 73,404 + HER17_RS00325 0.73 -0.9 73,583 + +0.5 73,584 - -0.5 73,627 + -0.7 73,628 - +0.0 73,657 + -1.2 73,657 + -0.2 73,657 + -0.5 73,657 + -0.2 73,657 + +0.5 73,657 + +1.7 73,658 - +0.2 73,658 - -0.4 73,658 - +0.2 73,658 - +1.3 73,658 - +1.5 73,658 - -0.5 73,658 - +0.5 73,676 + +0.3 73,701 + -0.3 73,709 + +0.5 73,736 + +0.2 73,745 + +0.5 73,827 - +1.0 73,873 + -0.1 74,001 + +0.4 74,093 - HER17_RS00330 0.13 -0.1 74,130 - HER17_RS00330 0.15 -0.2 74,211 + HER17_RS00330 0.19 -0.7 74,211 + HER17_RS00330 0.19 +0.9 74,211 + HER17_RS00330 0.19 -0.2 74,211 + HER17_RS00330 0.19 +0.0 74,211 + HER17_RS00330 0.19 +0.6 74,212 - HER17_RS00330 0.19 +0.0 74,212 - HER17_RS00330 0.19 -0.6 74,212 - HER17_RS00330 0.19 +0.3 74,259 + HER17_RS00330 0.22 -0.6 74,357 + HER17_RS00330 0.28 -1.9 74,358 - HER17_RS00330 0.28 -0.5 74,562 + HER17_RS00330 0.39 +0.2 74,563 - HER17_RS00330 0.39 +0.3 74,644 - HER17_RS00330 0.44 +0.1
Or see this region's nucleotide sequence