Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS20380 and HER17_RS20385 overlap by 4 nucleotides HER17_RS20385 and HER17_RS20390 are separated by 1 nucleotides HER17_RS20390 and HER17_RS20395 overlap by 20 nucleotides HER17_RS20395 and HER17_RS20400 are separated by 1 nucleotides HER17_RS20400 and HER17_RS20405 overlap by 4 nucleotides
HER17_RS20380: HER17_RS20380 - phosphomethylpyrimidine synthase ThiC, at 4,567,473 to 4,569,452
_RS20380
HER17_RS20385: HER17_RS20385 - thiamine phosphate synthase, at 4,569,449 to 4,570,090
_RS20385
HER17_RS20390: HER17_RS20390 - HesA/MoeB/ThiF family protein, at 4,570,092 to 4,570,886
_RS20390
HER17_RS20395: HER17_RS20395 - sulfur carrier protein ThiS, at 4,570,867 to 4,571,067
_RS20395
HER17_RS20400: HER17_RS20400 - thiazole synthase, at 4,571,069 to 4,571,854
_RS20400
HER17_RS20405: HER17_RS20405 - 2-iminoacetate synthase ThiH, at 4,571,851 to 4,572,972
_RS20405
Position (kb) 4570
4571 Strain fitness (log2 ratio) -1
0
1
2 at 4569.217 kb on - strand, within HER17_RS20380 at 4569.313 kb on + strand at 4569.313 kb on + strand at 4569.313 kb on + strand at 4569.412 kb on - strand at 4569.497 kb on + strand at 4569.511 kb on + strand at 4569.673 kb on - strand, within HER17_RS20385 at 4569.678 kb on + strand, within HER17_RS20385 at 4569.699 kb on + strand, within HER17_RS20385 at 4569.699 kb on + strand, within HER17_RS20385 at 4569.700 kb on - strand, within HER17_RS20385 at 4569.700 kb on - strand, within HER17_RS20385 at 4569.700 kb on - strand, within HER17_RS20385 at 4569.700 kb on - strand, within HER17_RS20385 at 4569.700 kb on - strand, within HER17_RS20385 at 4569.765 kb on + strand, within HER17_RS20385 at 4569.824 kb on + strand, within HER17_RS20385 at 4569.824 kb on + strand, within HER17_RS20385 at 4569.825 kb on - strand, within HER17_RS20385 at 4569.825 kb on - strand, within HER17_RS20385 at 4569.841 kb on + strand, within HER17_RS20385 at 4569.842 kb on - strand, within HER17_RS20385 at 4569.865 kb on + strand, within HER17_RS20385 at 4569.866 kb on - strand, within HER17_RS20385 at 4569.969 kb on + strand, within HER17_RS20385 at 4569.969 kb on + strand, within HER17_RS20385 at 4569.969 kb on + strand, within HER17_RS20385 at 4569.970 kb on - strand, within HER17_RS20385 at 4570.091 kb on + strand at 4570.096 kb on + strand at 4570.162 kb on + strand at 4570.162 kb on + strand at 4570.162 kb on + strand at 4570.162 kb on + strand at 4570.163 kb on - strand at 4570.406 kb on - strand, within HER17_RS20390 at 4570.460 kb on - strand, within HER17_RS20390 at 4570.460 kb on - strand, within HER17_RS20390 at 4570.461 kb on + strand, within HER17_RS20390 at 4570.461 kb on + strand, within HER17_RS20390 at 4570.461 kb on + strand, within HER17_RS20390 at 4570.461 kb on + strand, within HER17_RS20390 at 4570.462 kb on - strand, within HER17_RS20390 at 4570.462 kb on - strand, within HER17_RS20390 at 4570.462 kb on - strand, within HER17_RS20390 at 4570.462 kb on - strand, within HER17_RS20390 at 4570.632 kb on + strand, within HER17_RS20390 at 4570.633 kb on - strand, within HER17_RS20390 at 4570.719 kb on - strand, within HER17_RS20390 at 4570.852 kb on + strand at 4570.852 kb on + strand at 4570.940 kb on + strand, within HER17_RS20395 at 4571.095 kb on - strand at 4571.095 kb on - strand at 4571.178 kb on + strand, within HER17_RS20400 at 4571.178 kb on + strand, within HER17_RS20400 at 4571.179 kb on - strand, within HER17_RS20400 at 4571.179 kb on - strand, within HER17_RS20400 at 4571.254 kb on + strand, within HER17_RS20400 at 4571.255 kb on - strand, within HER17_RS20400 at 4571.257 kb on + strand, within HER17_RS20400 at 4571.257 kb on + strand, within HER17_RS20400 at 4571.257 kb on + strand, within HER17_RS20400 at 4571.258 kb on - strand, within HER17_RS20400 at 4571.378 kb on + strand, within HER17_RS20400 at 4571.378 kb on + strand, within HER17_RS20400 at 4571.378 kb on + strand, within HER17_RS20400 at 4571.379 kb on - strand, within HER17_RS20400 at 4571.779 kb on + strand at 4571.779 kb on + strand at 4571.779 kb on + strand at 4571.779 kb on + strand at 4571.780 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,569,217 - HER17_RS20380 0.88 +0.1 4,569,313 + -0.1 4,569,313 + +0.3 4,569,313 + -0.3 4,569,412 - +0.3 4,569,497 + +0.1 4,569,511 + -0.2 4,569,673 - HER17_RS20385 0.35 -0.0 4,569,678 + HER17_RS20385 0.36 +0.3 4,569,699 + HER17_RS20385 0.39 -1.4 4,569,699 + HER17_RS20385 0.39 -0.1 4,569,700 - HER17_RS20385 0.39 -0.4 4,569,700 - HER17_RS20385 0.39 -1.0 4,569,700 - HER17_RS20385 0.39 -0.1 4,569,700 - HER17_RS20385 0.39 -0.8 4,569,700 - HER17_RS20385 0.39 -0.9 4,569,765 + HER17_RS20385 0.49 +0.1 4,569,824 + HER17_RS20385 0.58 -0.7 4,569,824 + HER17_RS20385 0.58 -1.0 4,569,825 - HER17_RS20385 0.59 -0.5 4,569,825 - HER17_RS20385 0.59 +0.4 4,569,841 + HER17_RS20385 0.61 -0.5 4,569,842 - HER17_RS20385 0.61 +0.6 4,569,865 + HER17_RS20385 0.65 +0.4 4,569,866 - HER17_RS20385 0.65 +1.1 4,569,969 + HER17_RS20385 0.81 +1.3 4,569,969 + HER17_RS20385 0.81 +0.1 4,569,969 + HER17_RS20385 0.81 +0.9 4,569,970 - HER17_RS20385 0.81 +0.2 4,570,091 + +0.1 4,570,096 + -0.8 4,570,162 + -0.4 4,570,162 + -0.0 4,570,162 + -0.4 4,570,162 + +1.0 4,570,163 - -0.3 4,570,406 - HER17_RS20390 0.39 +1.9 4,570,460 - HER17_RS20390 0.46 -0.3 4,570,460 - HER17_RS20390 0.46 +0.1 4,570,461 + HER17_RS20390 0.46 +0.1 4,570,461 + HER17_RS20390 0.46 +0.7 4,570,461 + HER17_RS20390 0.46 -1.2 4,570,461 + HER17_RS20390 0.46 -0.2 4,570,462 - HER17_RS20390 0.47 +0.5 4,570,462 - HER17_RS20390 0.47 -1.7 4,570,462 - HER17_RS20390 0.47 +0.5 4,570,462 - HER17_RS20390 0.47 +0.1 4,570,632 + HER17_RS20390 0.68 +0.5 4,570,633 - HER17_RS20390 0.68 -0.1 4,570,719 - HER17_RS20390 0.79 +0.7 4,570,852 + +0.2 4,570,852 + +0.2 4,570,940 + HER17_RS20395 0.36 +0.2 4,571,095 - -0.3 4,571,095 - -0.1 4,571,178 + HER17_RS20400 0.14 +0.4 4,571,178 + HER17_RS20400 0.14 +1.2 4,571,179 - HER17_RS20400 0.14 +0.1 4,571,179 - HER17_RS20400 0.14 +0.5 4,571,254 + HER17_RS20400 0.24 +0.3 4,571,255 - HER17_RS20400 0.24 -0.5 4,571,257 + HER17_RS20400 0.24 +0.1 4,571,257 + HER17_RS20400 0.24 +0.3 4,571,257 + HER17_RS20400 0.24 +0.0 4,571,258 - HER17_RS20400 0.24 +0.3 4,571,378 + HER17_RS20400 0.39 +0.1 4,571,378 + HER17_RS20400 0.39 +0.8 4,571,378 + HER17_RS20400 0.39 +0.7 4,571,379 - HER17_RS20400 0.39 +0.2 4,571,779 + -0.1 4,571,779 + +0.8 4,571,779 + -0.2 4,571,779 + -0.2 4,571,780 - +0.2
Or see this region's nucleotide sequence