Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS20185

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
4,529,568	-		HER17_RS20180	0.37	+0.6
4,529,713	+		HER17_RS20180	0.52	+0.5
4,529,713	+		HER17_RS20180	0.52	+0.9
4,529,713	+		HER17_RS20180	0.52	+0.5
4,529,714	-		HER17_RS20180	0.52	+0.3
4,529,714	-		HER17_RS20180	0.52	+0.5
4,529,714	-		HER17_RS20180	0.52	+0.2
4,529,718	+		HER17_RS20180	0.52	+0.6
4,529,718	+		HER17_RS20180	0.52	-0.4
4,529,760	+		HER17_RS20180	0.57	+0.1
4,529,904	+		HER17_RS20180	0.71	+0.8
4,529,905	-		HER17_RS20180	0.72	+0.6
4,529,905	-		HER17_RS20180	0.72	-0.5
4,529,972	+		HER17_RS20180	0.78	-0.6
4,529,972	+		HER17_RS20180	0.78	-0.0
4,529,973	-		HER17_RS20180	0.79	+0.2
4,529,978	-		HER17_RS20180	0.79	-1.2
4,529,982	-		HER17_RS20180	0.79	+0.5
4,529,982	-		HER17_RS20180	0.79	+0.5
4,530,078	+		HER17_RS20180	0.89	+0.0
4,530,078	+		HER17_RS20180	0.89	-0.4
4,530,079	-		HER17_RS20180	0.89	+1.1
4,530,161	+				+1.3
4,530,180	+				+0.2
4,530,198	+				-0.2
4,530,198	+				+0.7
4,530,198	+				-0.3
4,530,199	-				+0.5
4,530,199	-				-0.1
4,530,234	-				+0.2
4,530,241	+				-0.4
4,530,241	+				+0.3
4,530,241	+				+0.7
4,530,242	-				-0.7
4,530,283	+				-0.2
4,530,284	-				-0.3
4,530,334	+				-0.3
4,530,334	+				-0.7
4,530,334	+				-0.8
4,530,335	-				-0.4
4,530,353	+				+0.1
4,530,353	+				-0.3
4,530,353	+				-0.2
4,530,353	+				+0.3
4,530,354	-				+0.7
4,530,354	-				-0.2
4,530,354	-				+0.8
4,530,363	+				-1.1
4,530,363	+				-0.2
4,530,363	+				-0.1
4,530,363	+				+0.4
4,530,364	-				+0.4
4,530,364	-				+0.2
4,530,364	-				+0.7
4,530,364	-				+0.7
4,530,364	-				+0.7
4,530,364	-				+0.1
4,530,364	-				+1.1
4,530,385	+				+0.9
4,530,385	+				-0.1
4,530,385	+				-0.5
4,530,386	-				+0.1
4,530,392	+				+0.4
4,530,410	+				-0.7
4,530,416	+				-0.6
4,530,432	+				-0.4
4,530,433	-				+0.4
4,530,433	-				-0.1
4,530,449	+				-0.7
4,530,489	+				-0.7
4,530,489	+				-0.3
4,530,489	+				+0.5
4,530,489	+				+0.4
4,530,489	+				+0.4
4,530,490	-				+0.2
4,530,490	-				-0.6
4,530,491	+				+0.2
4,530,492	-				-0.9
4,530,492	-				+0.4
4,530,492	-				+0.4
4,530,492	-				+0.5
4,530,495	+				+0.6
4,530,495	+				-0.2
4,530,495	+				+0.4
4,530,495	+				+0.8
4,530,495	+				+0.3
4,530,496	-				+0.3
4,530,496	-				+0.2
4,530,496	-				-0.1
4,530,496	-				+0.0
4,530,496	-				+0.6
4,530,496	-				+0.0
4,530,514	-				-0.1
4,530,514	-				+0.1
4,530,538	+				-0.4
4,530,539	-				-0.7
4,530,539	-				-1.6
4,530,539	-				+0.1
4,530,541	+				+0.1
4,530,617	-				+0.1
4,530,617	-				+0.4
4,530,617	-				-0.6
4,530,633	-				+0.3
4,530,635	+				+0.4
4,530,649	-				+0.5
4,530,756	+		HER17_RS20185	0.19	-0.2
4,530,804	+		HER17_RS20185	0.24	-0.5
4,530,804	+		HER17_RS20185	0.24	+0.6
4,530,804	+		HER17_RS20185	0.24	+0.3
4,530,804	+		HER17_RS20185	0.24	-0.1
4,530,818	-		HER17_RS20185	0.26	+0.5
4,530,818	-		HER17_RS20185	0.26	+0.4
4,530,830	-		HER17_RS20185	0.27	-0.1
4,530,905	+		HER17_RS20185	0.34	+0.2
4,530,905	+		HER17_RS20185	0.34	-0.4
4,530,905	+		HER17_RS20185	0.34	-0.3
4,530,954	-		HER17_RS20185	0.39	-0.5
4,531,054	-		HER17_RS20185	0.49	-0.3
4,531,105	+		HER17_RS20185	0.54	+0.6
4,531,105	+		HER17_RS20185	0.54	+0.3
4,531,168	+		HER17_RS20185	0.60	+1.1
4,531,172	+		HER17_RS20185	0.61	+0.7
4,531,172	+		HER17_RS20185	0.61	+0.3
4,531,172	+		HER17_RS20185	0.61	-0.3
4,531,172	+		HER17_RS20185	0.61	-0.1
4,531,172	+		HER17_RS20185	0.61	+0.4
4,531,172	+		HER17_RS20185	0.61	+1.1
4,531,173	-		HER17_RS20185	0.61	+0.9
4,531,319	+		HER17_RS20185	0.76	+0.2
4,531,319	+		HER17_RS20185	0.76	+0.3
4,531,319	+		HER17_RS20185	0.76	+0.2
4,531,319	+		HER17_RS20185	0.76	+1.0
4,531,319	+		HER17_RS20185	0.76	+0.3
4,531,320	-		HER17_RS20185	0.76	+0.4
4,531,320	-		HER17_RS20185	0.76	+0.1
4,531,320	-		HER17_RS20185	0.76	-0.4
4,531,320	-		HER17_RS20185	0.76	+0.5
4,531,320	-		HER17_RS20185	0.76	+0.7
4,531,320	-		HER17_RS20185	0.76	-0.1
4,531,320	-		HER17_RS20185	0.76	+0.4
4,531,323	+		HER17_RS20185	0.76	+0.4
4,531,390	+		HER17_RS20185	0.83	-0.4
4,531,390	+		HER17_RS20185	0.83	+0.8
4,531,391	-		HER17_RS20185	0.83	-0.6
4,531,391	-		HER17_RS20185	0.83	+0.3
4,531,565	+				+0.1
4,531,565	+				-1.0
4,531,582	+				+0.6
4,531,583	-				+0.4
4,531,586	+				+0.5
4,531,587	-				+1.5
4,531,587	-				-0.4
4,531,587	-				-0.4
4,531,589	+				-0.2
4,531,589	+				+0.7
4,531,674	-				+0.7
4,531,721	+		HER17_RS20190	0.13	-0.5
4,531,767	+		HER17_RS20190	0.21	+0.2
4,531,768	-		HER17_RS20190	0.21	-0.4
4,531,779	+		HER17_RS20190	0.23	+0.4
4,531,910	+		HER17_RS20190	0.45	+1.0
4,531,910	+		HER17_RS20190	0.45	+0.2
4,531,910	+		HER17_RS20190	0.45	+0.7
4,531,911	-		HER17_RS20190	0.45	+0.9
4,531,924	+		HER17_RS20190	0.47	+0.2
4,531,925	-		HER17_RS20190	0.47	+0.6
4,531,925	-		HER17_RS20190	0.47	-0.7
4,531,995	-		HER17_RS20190	0.59	+0.4
4,531,995	-		HER17_RS20190	0.59	+0.1
4,532,009	+		HER17_RS20190	0.61	+0.4
4,532,009	+		HER17_RS20190	0.61	-0.2
4,532,010	-		HER17_RS20190	0.61	-0.5
4,532,054	+		HER17_RS20190	0.69	+1.4
4,532,054	+		HER17_RS20190	0.69	+0.2
4,532,054	+		HER17_RS20190	0.69	+0.1
4,532,054	+		HER17_RS20190	0.69	+0.2
4,532,055	-		HER17_RS20190	0.69	-0.3
4,532,055	-		HER17_RS20190	0.69	+0.8
4,532,104	+		HER17_RS20190	0.77	+0.4
4,532,109	-		HER17_RS20190	0.78	+0.4
4,532,109	-		HER17_RS20190	0.78	-0.3
4,532,169	+		HER17_RS20190	0.88	+1.2
4,532,212	+				+0.1
4,532,212	+				+1.2
4,532,214	+				-0.0
4,532,214	+				-0.4
4,532,215	-				+0.3
4,532,215	-				+0.8
4,532,317	+				-0.4
4,532,329	+				+1.1
4,532,329	+				+0.1
4,532,330	-				-0.4
4,532,338	+				-0.2
4,532,338	+				+0.2
4,532,342	+				+0.1
4,532,361	+				-0.2
4,532,361	+				-0.9
4,532,362	-				-0.3
4,532,362	-				+0.1
4,532,368	-				-1.2
4,532,369	+				-1.5
4,532,370	-				+0.0
4,532,429	+				-1.0
4,532,486	+				+0.1