Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS19800 and HER17_RS19805 are separated by 84 nucleotides HER17_RS19805 and HER17_RS19810 overlap by 1 nucleotides HER17_RS19810 and HER17_RS19815 are separated by 107 nucleotides
HER17_RS19800: HER17_RS19800 - DNA topoisomerase IV subunit B, at 4,446,203 to 4,448,098
_RS19800
HER17_RS19805: HER17_RS19805 - esterase YqiA, at 4,448,183 to 4,448,764
_RS19805
HER17_RS19810: HER17_RS19810 - 3',5'-cyclic-AMP phosphodiesterase, at 4,448,764 to 4,449,591
_RS19810
HER17_RS19815: HER17_RS19815 - DUF1249 family protein, at 4,449,699 to 4,450,130
_RS19815
Position (kb) 4448
4449 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4448.173 kb on - strand at 4448.290 kb on - strand, within HER17_RS19805 at 4448.290 kb on - strand, within HER17_RS19805 at 4448.415 kb on - strand, within HER17_RS19805 at 4448.415 kb on - strand, within HER17_RS19805 at 4448.415 kb on - strand, within HER17_RS19805 at 4448.415 kb on - strand, within HER17_RS19805 at 4448.421 kb on + strand, within HER17_RS19805 at 4448.421 kb on + strand, within HER17_RS19805 at 4448.421 kb on + strand, within HER17_RS19805 at 4448.421 kb on + strand, within HER17_RS19805 at 4448.421 kb on + strand, within HER17_RS19805 at 4448.421 kb on + strand, within HER17_RS19805 at 4448.421 kb on + strand, within HER17_RS19805 at 4448.422 kb on - strand, within HER17_RS19805 at 4448.422 kb on - strand, within HER17_RS19805 at 4448.422 kb on - strand, within HER17_RS19805 at 4448.422 kb on - strand, within HER17_RS19805 at 4448.422 kb on - strand, within HER17_RS19805 at 4448.422 kb on - strand, within HER17_RS19805 at 4448.436 kb on + strand, within HER17_RS19805 at 4448.448 kb on + strand, within HER17_RS19805 at 4448.449 kb on - strand, within HER17_RS19805 at 4448.518 kb on + strand, within HER17_RS19805 at 4448.544 kb on + strand, within HER17_RS19805 at 4448.545 kb on - strand, within HER17_RS19805 at 4448.545 kb on - strand, within HER17_RS19805 at 4448.545 kb on - strand, within HER17_RS19805 at 4448.545 kb on - strand, within HER17_RS19805 at 4448.545 kb on - strand, within HER17_RS19805 at 4448.547 kb on + strand, within HER17_RS19805 at 4448.748 kb on + strand at 4448.765 kb on + strand at 4448.766 kb on - strand at 4448.766 kb on - strand at 4448.766 kb on - strand at 4448.768 kb on + strand at 4448.816 kb on + strand at 4448.849 kb on - strand, within HER17_RS19810 at 4448.849 kb on - strand, within HER17_RS19810 at 4448.896 kb on - strand, within HER17_RS19810 at 4448.917 kb on + strand, within HER17_RS19810 at 4448.918 kb on - strand, within HER17_RS19810 at 4448.918 kb on - strand, within HER17_RS19810 at 4448.982 kb on + strand, within HER17_RS19810 at 4448.982 kb on + strand, within HER17_RS19810 at 4448.982 kb on + strand, within HER17_RS19810 at 4449.034 kb on + strand, within HER17_RS19810 at 4449.034 kb on + strand, within HER17_RS19810 at 4449.034 kb on + strand, within HER17_RS19810 at 4449.040 kb on - strand, within HER17_RS19810 at 4449.117 kb on + strand, within HER17_RS19810 at 4449.118 kb on - strand, within HER17_RS19810 at 4449.220 kb on - strand, within HER17_RS19810 at 4449.265 kb on - strand, within HER17_RS19810 at 4449.265 kb on - strand, within HER17_RS19810 at 4449.326 kb on - strand, within HER17_RS19810 at 4449.467 kb on + strand, within HER17_RS19810 at 4449.471 kb on + strand, within HER17_RS19810 at 4449.472 kb on - strand, within HER17_RS19810 at 4449.472 kb on - strand, within HER17_RS19810 at 4449.472 kb on - strand, within HER17_RS19810 at 4449.476 kb on + strand, within HER17_RS19810 at 4449.477 kb on - strand, within HER17_RS19810 at 4449.525 kb on + strand at 4449.526 kb on - strand at 4449.526 kb on - strand at 4449.526 kb on - strand at 4449.526 kb on - strand at 4449.526 kb on - strand at 4449.526 kb on - strand at 4449.533 kb on - strand at 4449.539 kb on - strand at 4449.607 kb on - strand at 4449.610 kb on + strand at 4449.610 kb on + strand at 4449.611 kb on - strand at 4449.622 kb on + strand at 4449.700 kb on + strand at 4449.701 kb on - strand at 4449.701 kb on - strand at 4449.736 kb on + strand at 4449.753 kb on + strand, within HER17_RS19815
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,448,173 - +0.2 4,448,290 - HER17_RS19805 0.18 -1.0 4,448,290 - HER17_RS19805 0.18 +1.2 4,448,415 - HER17_RS19805 0.40 -0.9 4,448,415 - HER17_RS19805 0.40 -0.3 4,448,415 - HER17_RS19805 0.40 +0.9 4,448,415 - HER17_RS19805 0.40 +1.8 4,448,421 + HER17_RS19805 0.41 -0.2 4,448,421 + HER17_RS19805 0.41 +1.4 4,448,421 + HER17_RS19805 0.41 +0.2 4,448,421 + HER17_RS19805 0.41 -0.8 4,448,421 + HER17_RS19805 0.41 +0.2 4,448,421 + HER17_RS19805 0.41 +0.1 4,448,421 + HER17_RS19805 0.41 -0.4 4,448,422 - HER17_RS19805 0.41 +0.5 4,448,422 - HER17_RS19805 0.41 +0.5 4,448,422 - HER17_RS19805 0.41 +0.5 4,448,422 - HER17_RS19805 0.41 +0.2 4,448,422 - HER17_RS19805 0.41 -0.8 4,448,422 - HER17_RS19805 0.41 +0.3 4,448,436 + HER17_RS19805 0.43 -0.0 4,448,448 + HER17_RS19805 0.46 +0.0 4,448,449 - HER17_RS19805 0.46 +0.8 4,448,518 + HER17_RS19805 0.58 -0.6 4,448,544 + HER17_RS19805 0.62 -1.5 4,448,545 - HER17_RS19805 0.62 +1.1 4,448,545 - HER17_RS19805 0.62 +0.8 4,448,545 - HER17_RS19805 0.62 +0.4 4,448,545 - HER17_RS19805 0.62 +0.9 4,448,545 - HER17_RS19805 0.62 +0.3 4,448,547 + HER17_RS19805 0.63 -0.1 4,448,748 + +0.5 4,448,765 + -0.3 4,448,766 - -0.7 4,448,766 - -0.1 4,448,766 - +1.2 4,448,768 + +0.2 4,448,816 + -0.4 4,448,849 - HER17_RS19810 0.10 -0.9 4,448,849 - HER17_RS19810 0.10 -1.3 4,448,896 - HER17_RS19810 0.16 +1.1 4,448,917 + HER17_RS19810 0.18 +0.0 4,448,918 - HER17_RS19810 0.19 +0.1 4,448,918 - HER17_RS19810 0.19 -0.1 4,448,982 + HER17_RS19810 0.26 -0.6 4,448,982 + HER17_RS19810 0.26 +0.0 4,448,982 + HER17_RS19810 0.26 -0.5 4,449,034 + HER17_RS19810 0.33 +0.9 4,449,034 + HER17_RS19810 0.33 +0.3 4,449,034 + HER17_RS19810 0.33 +1.2 4,449,040 - HER17_RS19810 0.33 +0.4 4,449,117 + HER17_RS19810 0.43 -1.2 4,449,118 - HER17_RS19810 0.43 +0.1 4,449,220 - HER17_RS19810 0.55 +0.5 4,449,265 - HER17_RS19810 0.61 -0.3 4,449,265 - HER17_RS19810 0.61 -0.3 4,449,326 - HER17_RS19810 0.68 -2.3 4,449,467 + HER17_RS19810 0.85 +1.0 4,449,471 + HER17_RS19810 0.85 -0.6 4,449,472 - HER17_RS19810 0.86 +0.3 4,449,472 - HER17_RS19810 0.86 -0.6 4,449,472 - HER17_RS19810 0.86 +0.3 4,449,476 + HER17_RS19810 0.86 +0.2 4,449,477 - HER17_RS19810 0.86 +0.2 4,449,525 + +1.0 4,449,526 - +0.8 4,449,526 - +0.9 4,449,526 - +0.2 4,449,526 - -0.1 4,449,526 - -0.4 4,449,526 - +0.2 4,449,533 - -0.2 4,449,539 - -0.3 4,449,607 - +0.5 4,449,610 + -0.0 4,449,610 + -0.3 4,449,611 - -0.3 4,449,622 + +0.1 4,449,700 + -0.1 4,449,701 - -0.6 4,449,701 - -0.6 4,449,736 + -0.9 4,449,753 + HER17_RS19815 0.12 +0.2
Or see this region's nucleotide sequence