Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS18105

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
4,075,352	+		HER17_RS18095	0.81	-1.1
4,075,353	-		HER17_RS18095	0.81	+0.8
4,075,440	+				-0.1
4,075,440	+				-0.1
4,075,441	-				-1.0
4,075,441	-				-1.8
4,075,465	+				+0.3
4,075,465	+				-0.8
4,075,630	+				+0.0
4,075,631	-				+0.3
4,075,631	-				-0.5
4,075,631	-				+0.2
4,075,634	-				-0.4
4,075,634	-				-0.2
4,075,696	-				+0.3
4,075,702	-				+0.8
4,075,702	-				+0.2
4,075,702	-				+1.3
4,075,726	+				+0.4
4,075,726	+				-0.7
4,075,727	-				+0.3
4,075,757	+		HER17_RS18100	0.14	-0.8
4,075,812	-		HER17_RS18100	0.24	+0.9
4,075,830	-		HER17_RS18100	0.27	-0.8
4,075,870	+		HER17_RS18100	0.35	+0.6
4,075,870	+		HER17_RS18100	0.35	+0.1
4,075,870	+		HER17_RS18100	0.35	-0.8
4,075,870	+		HER17_RS18100	0.35	+0.6
4,075,871	-		HER17_RS18100	0.35	+0.1
4,075,871	-		HER17_RS18100	0.35	+0.3
4,075,871	-		HER17_RS18100	0.35	-0.1
4,075,880	+		HER17_RS18100	0.37	+0.6
4,075,880	+		HER17_RS18100	0.37	+0.1
4,075,881	-		HER17_RS18100	0.37	-0.8
4,075,893	+		HER17_RS18100	0.39	-0.1
4,075,893	+		HER17_RS18100	0.39	-0.3
4,075,893	+		HER17_RS18100	0.39	+0.5
4,075,893	+		HER17_RS18100	0.39	+0.2
4,075,893	+		HER17_RS18100	0.39	-0.1
4,075,894	-		HER17_RS18100	0.39	+0.8
4,075,894	-		HER17_RS18100	0.39	-0.5
4,075,894	-		HER17_RS18100	0.39	+1.0
4,076,015	-		HER17_RS18100	0.62	-0.2
4,076,015	-		HER17_RS18100	0.62	+0.1
4,076,091	-		HER17_RS18100	0.76	+0.6
4,076,091	-		HER17_RS18100	0.76	+0.6
4,076,146	+		HER17_RS18100	0.86	+0.6
4,076,146	+		HER17_RS18100	0.86	-0.2
4,076,180	+				+0.1
4,076,181	-				-0.4
4,076,181	-				+0.4
4,076,181	-				+0.6
4,076,181	-				-0.0
4,076,192	+				-0.5
4,076,192	+				-1.0
4,076,192	+				+0.3
4,076,193	-				-0.0
4,076,193	-				-0.2
4,076,193	-				+0.3
4,076,193	-				+0.2
4,076,193	-				-0.5
4,076,225	+				+1.8
4,076,225	+				-0.2
4,076,226	-				-0.3
4,076,226	-				+0.2
4,076,226	-				+0.2
4,076,266	-				+0.5
4,076,304	+				+0.0
4,076,304	+				+0.4
4,076,304	+				-0.1
4,076,362	-		HER17_RS18105	0.15	+0.6
4,076,432	-		HER17_RS18105	0.22	+0.4
4,076,536	+		HER17_RS18105	0.33	-0.5
4,076,623	+		HER17_RS18105	0.42	+0.1
4,076,624	-		HER17_RS18105	0.42	-0.1
4,076,700	-		HER17_RS18105	0.50	-0.0
4,076,823	+		HER17_RS18105	0.63	-0.9
4,076,824	-		HER17_RS18105	0.63	+0.0
4,076,853	+		HER17_RS18105	0.66	-0.1
4,076,853	+		HER17_RS18105	0.66	-0.6
4,076,854	-		HER17_RS18105	0.66	-1.7
4,076,854	-		HER17_RS18105	0.66	-0.4
4,076,968	+		HER17_RS18105	0.78	+0.2
4,076,968	+		HER17_RS18105	0.78	+0.4
4,077,010	+		HER17_RS18105	0.82	-1.0
4,077,011	-		HER17_RS18105	0.82	+1.1
4,077,183	+				+0.1
4,077,198	+				+0.9
4,077,202	+				-0.3
4,077,326	-				+0.1
4,077,469	+				+0.6
4,077,470	-				+0.0
4,077,509	+				+0.1
4,077,510	-				-0.3
4,077,569	+		HER17_RS18110	0.11	-0.4
4,077,569	+		HER17_RS18110	0.11	+0.7
4,077,634	+		HER17_RS18110	0.13	-0.2
4,077,634	+		HER17_RS18110	0.13	+0.2
4,077,634	+		HER17_RS18110	0.13	-0.5
4,077,635	-		HER17_RS18110	0.13	-0.4
4,077,635	-		HER17_RS18110	0.13	+1.2
4,077,635	-		HER17_RS18110	0.13	-0.4
4,077,731	+		HER17_RS18110	0.17	+0.0
4,077,731	+		HER17_RS18110	0.17	+0.1
4,077,731	+		HER17_RS18110	0.17	+0.4
4,077,732	-		HER17_RS18110	0.17	-0.8
4,077,732	-		HER17_RS18110	0.17	+0.1
4,077,732	-		HER17_RS18110	0.17	-0.0
4,077,732	-		HER17_RS18110	0.17	-0.7
4,077,765	+		HER17_RS18110	0.19	-0.4
4,077,765	+		HER17_RS18110	0.19	+0.2
4,077,766	-		HER17_RS18110	0.19	-1.1
4,077,899	+		HER17_RS18110	0.24	+0.3
4,077,900	-		HER17_RS18110	0.24	+0.3
4,077,900	-		HER17_RS18110	0.24	+0.2
4,077,940	+		HER17_RS18110	0.26	-0.2
4,077,940	+		HER17_RS18110	0.26	+0.5
4,077,941	-		HER17_RS18110	0.26	-0.5
4,077,941	-		HER17_RS18110	0.26	-0.2
4,077,941	-		HER17_RS18110	0.26	-0.6
4,078,035	-		HER17_RS18110	0.29	-2.2
4,078,035	-		HER17_RS18110	0.29	+0.8
4,078,178	+		HER17_RS18110	0.35	+0.7
4,078,179	-		HER17_RS18110	0.35	+0.4