Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS17520

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,941,571	+		HER17_RS17510	0.74	-0.6
3,941,605	+		HER17_RS17510	0.76	-1.3
3,941,622	-		HER17_RS17510	0.76	-0.2
3,941,758	+		HER17_RS17510	0.82	-0.1
3,941,920	-		HER17_RS17510	0.89	+0.0
3,941,920	-		HER17_RS17510	0.89	+1.0
3,941,920	-		HER17_RS17510	0.89	+0.3
3,941,920	-		HER17_RS17510	0.89	+0.3
3,941,920	-		HER17_RS17510	0.89	-0.2
3,941,920	-		HER17_RS17510	0.89	-0.2
3,941,920	-		HER17_RS17510	0.89	+0.0
3,941,921	+		HER17_RS17510	0.89	+0.3
3,941,922	-		HER17_RS17510	0.89	-0.9
3,941,957	+				+1.0
3,941,957	+				-0.1
3,941,958	-				+0.8
3,941,961	+				-0.0
3,941,961	+				+0.1
3,941,962	-				+0.7
3,941,968	-				-0.3
3,941,977	-				+0.0
3,942,035	+				+0.3
3,942,076	-				-0.0
3,942,103	+				-0.3
3,942,103	+				+0.9
3,942,103	+				-0.3
3,942,104	-				+0.1
3,942,104	-				+0.1
3,942,104	-				+0.5
3,942,163	+				-0.2
3,942,183	-				+0.1
3,942,229	+				+0.3
3,942,230	-				-1.3
3,942,232	+				-0.9
3,942,232	+				-1.0
3,942,232	+				+0.8
3,942,232	+				-0.4
3,942,232	+				-0.4
3,942,232	+				-0.8
3,942,232	+				+0.1
3,942,233	-				-0.2
3,942,233	-				+0.4
3,942,248	+				-0.2
3,942,249	-				+0.2
3,942,268	-				+0.2
3,942,279	+		HER17_RS17515	0.12	+1.1
3,942,347	+		HER17_RS17515	0.32	+0.6
3,942,390	+		HER17_RS17515	0.45	-2.1
3,942,390	+		HER17_RS17515	0.45	+0.2
3,942,403	+		HER17_RS17515	0.49	-0.3
3,942,447	-		HER17_RS17515	0.62	-0.3
3,942,457	+		HER17_RS17515	0.65	+0.4
3,942,483	+		HER17_RS17515	0.73	+0.4
3,942,484	-		HER17_RS17515	0.74	-0.6
3,942,495	+		HER17_RS17515	0.77	-1.5
3,942,495	+		HER17_RS17515	0.77	+1.0
3,942,530	-		HER17_RS17515	0.88	-0.5
3,942,530	-		HER17_RS17515	0.88	-0.3
3,942,578	-				-0.0
3,942,578	-				-0.6
3,942,617	+		HER17_RS17520	0.10	-0.3
3,942,617	+		HER17_RS17520	0.10	+1.2
3,942,619	+		HER17_RS17520	0.10	+1.8
3,942,619	+		HER17_RS17520	0.10	+0.7
3,942,656	+		HER17_RS17520	0.18	+0.3
3,942,656	+		HER17_RS17520	0.18	-1.1
3,942,656	+		HER17_RS17520	0.18	-1.7
3,942,656	+		HER17_RS17520	0.18	+0.7
3,942,656	+		HER17_RS17520	0.18	-0.0
3,942,657	-		HER17_RS17520	0.18	-0.0
3,942,657	-		HER17_RS17520	0.18	-0.4
3,942,657	-		HER17_RS17520	0.18	+0.5
3,942,660	+		HER17_RS17520	0.19	+0.3
3,942,660	+		HER17_RS17520	0.19	-0.5
3,942,661	-		HER17_RS17520	0.19	-2.9
3,942,661	-		HER17_RS17520	0.19	+0.0
3,942,663	+		HER17_RS17520	0.20	+0.3
3,942,664	-		HER17_RS17520	0.20	-0.3
3,942,674	-		HER17_RS17520	0.22	-1.7
3,942,674	-		HER17_RS17520	0.22	+0.1
3,942,678	+		HER17_RS17520	0.23	-0.6
3,942,679	-		HER17_RS17520	0.23	-0.3
3,942,691	+		HER17_RS17520	0.26	-0.3
3,942,691	+		HER17_RS17520	0.26	-0.1
3,942,692	-		HER17_RS17520	0.26	-0.0
3,942,723	-		HER17_RS17520	0.32	+0.1
3,942,723	-		HER17_RS17520	0.32	-0.9
3,942,792	+		HER17_RS17520	0.47	+0.1
3,942,793	-		HER17_RS17520	0.47	-0.1
3,942,793	-		HER17_RS17520	0.47	-0.4
3,942,879	+		HER17_RS17520	0.66	-0.2
3,942,879	+		HER17_RS17520	0.66	+0.0
3,942,879	+		HER17_RS17520	0.66	+0.3
3,942,880	-		HER17_RS17520	0.66	-0.9
3,942,883	+		HER17_RS17520	0.66	-0.1
3,942,883	+		HER17_RS17520	0.66	+0.1
3,942,884	-		HER17_RS17520	0.67	+0.9
3,942,917	+		HER17_RS17520	0.74	-0.3
3,942,917	+		HER17_RS17520	0.74	-0.3
3,942,918	-		HER17_RS17520	0.74	-0.3
3,942,966	-		HER17_RS17520	0.84	+1.0
3,942,966	-		HER17_RS17520	0.84	+1.6
3,942,970	-		HER17_RS17520	0.85	-0.1
3,943,006	+				-0.4
3,943,007	-				+0.4
3,943,009	+				+0.1
3,943,009	+				+0.3
3,943,010	-				-0.9
3,943,010	-				-0.1
3,943,010	-				+0.4
3,943,010	-				+0.7
3,943,017	-				-1.6
3,943,031	+				+0.6
3,943,035	-				-0.0
3,943,074	+				+0.6
3,943,095	+				+0.6
3,943,095	+				-0.8
3,943,102	+				+0.2
3,943,146	+				-0.0
3,943,147	-				+1.0
3,943,155	+				-0.1
3,943,169	+				-0.1
3,943,169	+				-1.4
3,943,177	+				+0.2
3,943,177	+				-0.5
3,943,209	-		HER17_RS17525	0.15	-0.2
3,943,303	-		HER17_RS17525	0.53	-0.8
3,943,303	-		HER17_RS17525	0.53	-0.1
3,943,303	-		HER17_RS17525	0.53	-0.2
3,943,418	-				-0.0
3,943,420	-				+0.8
3,943,420	-				+0.3
3,943,420	-				-0.3
3,943,512	+				+0.2
3,943,640	+				-0.2
3,943,719	+				+0.5
3,943,721	+				+0.3
3,943,766	+		HER17_RS17535	0.30	+0.4
3,943,811	+		HER17_RS17535	0.55	+0.2
3,943,812	-		HER17_RS17535	0.56	-1.3
3,943,812	-		HER17_RS17535	0.56	-0.6
3,943,812	-		HER17_RS17535	0.56	+0.7
3,943,816	+		HER17_RS17535	0.58	-0.1
3,943,816	+		HER17_RS17535	0.58	+0.1
3,943,817	-		HER17_RS17535	0.59	+0.2
3,943,817	-		HER17_RS17535	0.59	-0.0
3,943,817	-		HER17_RS17535	0.59	-0.5
3,943,820	-		HER17_RS17535	0.60	-0.2
3,943,846	+		HER17_RS17535	0.75	-0.3
3,943,846	+		HER17_RS17535	0.75	-0.1
3,943,846	+		HER17_RS17535	0.75	+0.1
3,943,847	-		HER17_RS17535	0.76	-0.4
3,943,881	-				-1.1
3,943,899	+				+0.2
3,943,908	+				+0.2
3,943,986	+				-0.2
3,944,025	+				+0.2
3,944,025	+				-0.4
3,944,025	+				-0.2
3,944,026	-				+0.1
3,944,039	+				-0.9
3,944,039	+				-0.2
3,944,039	+				+0.8