Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS16465

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,714,446	+		HER17_RS16460	0.44	-0.0
3,714,447	-		HER17_RS16460	0.44	-0.2
3,714,474	+		HER17_RS16460	0.45	+0.1
3,714,474	+		HER17_RS16460	0.45	-0.4
3,714,587	-		HER17_RS16460	0.52	+0.2
3,714,592	+		HER17_RS16460	0.52	-0.4
3,714,593	-		HER17_RS16460	0.52	+0.3
3,714,689	-		HER17_RS16460	0.58	+0.1
3,714,736	+		HER17_RS16460	0.60	+0.2
3,714,737	-		HER17_RS16460	0.60	-0.8
3,714,847	-		HER17_RS16460	0.67	+0.3
3,714,882	-		HER17_RS16460	0.69	+0.7
3,714,882	-		HER17_RS16460	0.69	+1.0
3,714,916	+		HER17_RS16460	0.71	-0.1
3,714,917	-		HER17_RS16460	0.71	-0.2
3,714,917	-		HER17_RS16460	0.71	+0.0
3,714,939	+		HER17_RS16460	0.72	+0.4
3,714,939	+		HER17_RS16460	0.72	+0.1
3,714,939	+		HER17_RS16460	0.72	-1.9
3,714,939	+		HER17_RS16460	0.72	+0.3
3,714,940	-		HER17_RS16460	0.72	+0.2
3,714,940	-		HER17_RS16460	0.72	+0.1
3,715,142	-		HER17_RS16460	0.84	+0.2
3,715,208	-		HER17_RS16460	0.88	-1.2
3,715,235	+		HER17_RS16460	0.89	-0.6
3,715,235	+		HER17_RS16460	0.89	-1.7
3,715,236	-		HER17_RS16460	0.89	-0.2
3,715,325	+				-0.8
3,715,326	-				+0.3
3,715,326	-				-0.2
3,715,326	-				+0.4
3,715,384	+				-1.3
3,715,416	-				-1.3
3,715,440	-				-0.2
3,715,440	-				+0.1
3,715,526	+				-0.1
3,715,527	-				-0.6
3,715,527	-				+0.3
3,715,577	-		HER17_RS16465	0.13	-1.1
3,715,651	+		HER17_RS16465	0.19	+0.5
3,715,651	+		HER17_RS16465	0.19	-0.1
3,715,651	+		HER17_RS16465	0.19	+1.0
3,715,651	+		HER17_RS16465	0.19	+0.1
3,715,651	+		HER17_RS16465	0.19	+0.3
3,715,652	-		HER17_RS16465	0.20	-0.1
3,715,652	-		HER17_RS16465	0.20	-0.0
3,715,697	+		HER17_RS16465	0.23	-0.1
3,715,698	-		HER17_RS16465	0.23	-0.6
3,715,710	+		HER17_RS16465	0.24	+0.5
3,715,710	+		HER17_RS16465	0.24	+0.4
3,715,712	+		HER17_RS16465	0.24	-0.6
3,715,815	+		HER17_RS16465	0.33	-0.8
3,715,816	-		HER17_RS16465	0.33	+0.3
3,715,857	-		HER17_RS16465	0.36	+0.2
3,716,112	-		HER17_RS16465	0.57	+0.8
3,716,122	+		HER17_RS16465	0.57	+0.5
3,716,123	-		HER17_RS16465	0.58	+0.7
3,716,349	+		HER17_RS16465	0.76	-0.1
3,716,361	+		HER17_RS16465	0.77	+0.4
3,716,382	-		HER17_RS16465	0.78	-0.4
3,716,484	+		HER17_RS16465	0.87	+0.4
3,716,485	-		HER17_RS16465	0.87	-0.0
3,716,485	-		HER17_RS16465	0.87	+0.7
3,716,574	+				+0.4
3,716,582	+				+0.9
3,716,603	-				-0.2
3,716,603	-				-0.2
3,716,614	-				-0.2
3,716,676	-				+0.3
3,716,787	-				-0.6
3,716,816	+		HER17_RS16470	0.12	+0.2
3,716,816	+		HER17_RS16470	0.12	-0.9
3,716,842	+		HER17_RS16470	0.16	-0.0
3,716,860	+		HER17_RS16470	0.18	-0.5
3,716,878	+		HER17_RS16470	0.21	+0.5
3,716,878	+		HER17_RS16470	0.21	+0.3
3,716,879	-		HER17_RS16470	0.21	-0.0
3,716,879	-		HER17_RS16470	0.21	+0.0
3,716,879	-		HER17_RS16470	0.21	+0.4
3,716,898	+		HER17_RS16470	0.24	+1.9
3,716,902	-		HER17_RS16470	0.24	+0.4
3,716,902	-		HER17_RS16470	0.24	+0.1
3,716,924	-		HER17_RS16470	0.27	-0.3
3,716,960	-		HER17_RS16470	0.32	+0.7
3,717,092	+		HER17_RS16470	0.51	-0.6
3,717,092	+		HER17_RS16470	0.51	+0.0
3,717,092	+		HER17_RS16470	0.51	-0.2
3,717,092	+		HER17_RS16470	0.51	-0.2
3,717,281	-		HER17_RS16470	0.78	+0.2
3,717,370	+				+0.1
3,717,370	+				-0.1
3,717,370	+				+0.2
3,717,371	-				-0.5
3,717,373	+				-0.3
3,717,373	+				-0.5
3,717,374	-				+0.3
3,717,440	-				-2.2
3,717,443	+				+0.9
3,717,458	+				-0.1
3,717,458	+				+0.2
3,717,458	+				-0.1
3,717,459	-				-0.5
3,717,459	-				+0.1
3,717,459	-				+1.5
3,717,459	-				+0.7
3,717,519	+				-0.1
3,717,528	+				-0.9
3,717,528	+				-1.7
3,717,529	-				+0.7
3,717,529	-				-0.6