Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS15360

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,445,306	+		HER17_RS15355	0.77	+0.1
3,445,307	-		HER17_RS15355	0.77	-0.5
3,445,330	+		HER17_RS15355	0.78	+0.5
3,445,331	-		HER17_RS15355	0.78	+0.2
3,445,331	-		HER17_RS15355	0.78	-0.3
3,445,360	+		HER17_RS15355	0.79	-0.0
3,445,360	+		HER17_RS15355	0.79	+0.1
3,445,360	+		HER17_RS15355	0.79	-0.0
3,445,360	+		HER17_RS15355	0.79	-0.1
3,445,361	-		HER17_RS15355	0.79	-0.7
3,445,361	-		HER17_RS15355	0.79	+0.8
3,445,361	-		HER17_RS15355	0.79	-0.8
3,445,397	+		HER17_RS15355	0.80	+0.1
3,445,427	+		HER17_RS15355	0.82	-0.2
3,445,427	+		HER17_RS15355	0.82	-0.0
3,445,432	+		HER17_RS15355	0.82	-0.5
3,445,433	-		HER17_RS15355	0.82	-0.3
3,445,530	-		HER17_RS15355	0.86	-0.3
3,445,530	-		HER17_RS15355	0.86	+0.7
3,445,533	-		HER17_RS15355	0.86	-0.3
3,445,547	+		HER17_RS15355	0.87	+0.1
3,445,547	+		HER17_RS15355	0.87	+0.4
3,445,547	+		HER17_RS15355	0.87	+0.7
3,445,547	+		HER17_RS15355	0.87	+0.4
3,445,548	-		HER17_RS15355	0.87	+1.0
3,445,550	+		HER17_RS15355	0.87	-0.3
3,445,550	+		HER17_RS15355	0.87	-0.3
3,445,551	-		HER17_RS15355	0.87	-0.1
3,445,579	-		HER17_RS15355	0.88	+0.9
3,445,579	-		HER17_RS15355	0.88	+0.5
3,445,579	-		HER17_RS15355	0.88	-0.1
3,445,582	+		HER17_RS15355	0.88	+1.4
3,445,627	+				-0.5
3,445,697	-				-0.5
3,445,777	+				+0.3
3,445,790	-				+0.9
3,445,790	-				-0.3
3,445,790	-				+0.8
3,445,895	-				+0.8
3,445,895	-				-0.0
3,445,906	+				+0.2
3,445,906	+				+0.2
3,445,907	-				+0.1
3,445,986	-				+0.4
3,445,986	-				+0.5
3,446,012	+				+0.6
3,446,032	+				+1.4
3,446,033	-				-0.9
3,446,086	+				+0.2
3,446,094	+				-0.2
3,446,110	+				+0.1
3,446,110	+				+1.2
3,446,124	+				+0.4
3,446,128	+				+0.9
3,446,129	-				+0.4
3,446,129	-				-0.4
3,446,129	-				+0.1
3,446,135	-				-0.1
3,446,248	+				+0.7
3,446,253	+				+0.1
3,446,258	-				-0.3
3,446,258	-				+0.5
3,446,258	-				+0.1
3,446,271	+				-0.9
3,446,271	+				+0.6
3,446,272	-				+0.7
3,446,272	-				+0.1
3,446,272	-				+0.5
3,446,272	-				-0.3
3,446,272	-				-0.4
3,446,272	-				+0.6
3,446,300	-				+0.2
3,446,437	+		HER17_RS15360	0.32	-0.8
3,446,437	+		HER17_RS15360	0.32	-0.6
3,446,437	+		HER17_RS15360	0.32	+0.6
3,446,438	-		HER17_RS15360	0.33	+0.4
3,446,438	-		HER17_RS15360	0.33	-0.1
3,446,462	+		HER17_RS15360	0.37	-1.0
3,446,462	+		HER17_RS15360	0.37	-1.3
3,446,463	-		HER17_RS15360	0.37	+0.0
3,446,479	+		HER17_RS15360	0.40	-0.2
3,446,479	+		HER17_RS15360	0.40	+0.8
3,446,484	+		HER17_RS15360	0.41	-0.6
3,446,485	-		HER17_RS15360	0.42	+0.3
3,446,485	-		HER17_RS15360	0.42	-0.5
3,446,520	+		HER17_RS15360	0.48	-0.4
3,446,540	+		HER17_RS15360	0.52	+0.1
3,446,540	+		HER17_RS15360	0.52	-0.2
3,446,679	+		HER17_RS15360	0.79	-0.1
3,446,680	-		HER17_RS15360	0.79	+0.3
3,446,680	-		HER17_RS15360	0.79	+0.5
3,446,730	+		HER17_RS15360	0.89	-1.1
3,446,730	+		HER17_RS15360	0.89	+0.2
3,446,730	+		HER17_RS15360	0.89	-0.1
3,446,731	-		HER17_RS15360	0.89	-0.5
3,446,731	-		HER17_RS15360	0.89	+0.1
3,446,731	-		HER17_RS15360	0.89	+0.2
3,446,731	-		HER17_RS15360	0.89	+0.3
3,446,731	-		HER17_RS15360	0.89	+0.7
3,446,731	-		HER17_RS15360	0.89	+0.3
3,446,757	+				-0.2
3,446,785	+				-0.2
3,446,785	+				-0.0
3,446,785	+				-1.2
3,446,785	+				+0.4
3,446,785	+				+0.9
3,446,785	+				+0.4
3,446,786	-				-1.0
3,446,786	-				+0.5
3,446,786	-				+0.1
3,446,786	-				-0.1
3,446,786	-				-0.6
3,446,786	-				+0.5
3,446,787	+				+0.8
3,446,787	+				-0.6
3,446,787	+				+0.6
3,446,788	-				-0.2
3,446,788	-				+0.3
3,446,890	-				-0.0
3,446,899	-		HER17_RS15365	0.10	+0.0
3,447,023	-		HER17_RS15365	0.23	-0.8
3,447,112	-		HER17_RS15365	0.32	-0.2
3,447,140	-		HER17_RS15365	0.35	+0.7
3,447,188	+		HER17_RS15365	0.40	+0.3
3,447,188	+		HER17_RS15365	0.40	+0.2
3,447,189	-		HER17_RS15365	0.40	+0.1
3,447,189	-		HER17_RS15365	0.40	+1.2
3,447,262	+		HER17_RS15365	0.48	+0.1
3,447,266	+		HER17_RS15365	0.48	-0.3
3,447,266	+		HER17_RS15365	0.48	-1.2
3,447,299	+		HER17_RS15365	0.52	-0.9
3,447,300	-		HER17_RS15365	0.52	-0.0
3,447,300	-		HER17_RS15365	0.52	+0.4
3,447,300	-		HER17_RS15365	0.52	+0.1
3,447,493	-		HER17_RS15365	0.72	+0.8
3,447,550	+		HER17_RS15365	0.78	+0.0
3,447,551	-		HER17_RS15365	0.78	+0.3
3,447,581	+		HER17_RS15365	0.81	-0.9
3,447,581	+		HER17_RS15365	0.81	+1.1
3,447,587	-		HER17_RS15365	0.81	+0.3
3,447,594	+		HER17_RS15365	0.82	-0.9
3,447,594	+		HER17_RS15365	0.82	-0.2
3,447,675	+				-0.4
3,447,675	+				-0.6
3,447,675	+				-0.1
3,447,675	+				+0.0
3,447,676	-				+1.7
3,447,676	-				+0.2
3,447,723	-				-1.9
3,447,723	-				+0.8
3,447,739	+				-0.6
3,447,739	+				+0.4
3,447,739	+				+0.1
3,447,739	+				+0.2
3,447,739	+				+0.6
3,447,739	+				-0.5
3,447,740	-				-0.0
3,447,740	-				-0.2
3,447,743	+				-0.5
3,447,743	+				-2.1
3,447,766	-				+0.2