Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS14360

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,228,080	+		HER17_RS14355	0.40	+0.3
3,228,153	-		HER17_RS14355	0.45	+0.0
3,228,156	+		HER17_RS14355	0.45	-0.4
3,228,157	-		HER17_RS14355	0.45	-1.2
3,228,157	-		HER17_RS14355	0.45	-0.2
3,228,265	-		HER17_RS14355	0.53	-0.1
3,228,324	+		HER17_RS14355	0.57	-0.1
3,228,324	+		HER17_RS14355	0.57	-0.9
3,228,330	+		HER17_RS14355	0.57	+0.1
3,228,340	+		HER17_RS14355	0.58	-0.9
3,228,340	+		HER17_RS14355	0.58	-1.1
3,228,340	+		HER17_RS14355	0.58	+0.3
3,228,341	-		HER17_RS14355	0.58	-0.9
3,228,341	-		HER17_RS14355	0.58	+0.3
3,228,341	-		HER17_RS14355	0.58	+0.2
3,228,341	-		HER17_RS14355	0.58	+0.8
3,228,341	-		HER17_RS14355	0.58	-0.2
3,228,434	+		HER17_RS14355	0.64	-0.1
3,228,435	-		HER17_RS14355	0.64	+0.3
3,228,471	+		HER17_RS14355	0.67	-0.3
3,228,471	+		HER17_RS14355	0.67	+0.0
3,228,471	+		HER17_RS14355	0.67	-0.2
3,228,472	-		HER17_RS14355	0.67	+0.4
3,228,472	-		HER17_RS14355	0.67	+0.1
3,228,472	-		HER17_RS14355	0.67	+0.1
3,228,472	-		HER17_RS14355	0.67	-0.4
3,228,472	-		HER17_RS14355	0.67	-0.4
3,228,472	-		HER17_RS14355	0.67	+0.6
3,228,618	+		HER17_RS14355	0.77	+1.2
3,228,717	+		HER17_RS14355	0.83	-0.5
3,228,717	+		HER17_RS14355	0.83	-0.2
3,228,718	-		HER17_RS14355	0.83	-0.2
3,228,718	-		HER17_RS14355	0.83	+0.2
3,228,718	-		HER17_RS14355	0.83	-0.0
3,228,841	-				-2.7
3,228,848	+				+0.3
3,228,848	+				-0.5
3,228,849	-				-1.2
3,228,852	+				-0.2
3,228,852	+				-0.0
3,228,852	+				+0.0
3,228,852	+				+0.8
3,228,852	+				-0.0
3,228,853	-				-0.1
3,228,853	-				-1.9
3,228,853	-				-0.2
3,228,913	-				+1.3
3,228,913	-				-0.2
3,228,918	+				-0.3
3,228,980	+				+0.0
3,228,980	+				-1.8
3,228,981	-				+0.0
3,228,981	-				+0.9
3,228,981	-				+0.3
3,229,021	+				-0.2
3,229,307	-		HER17_RS14360	0.30	+0.8
3,229,357	+		HER17_RS14360	0.36	+0.6
3,229,358	-		HER17_RS14360	0.36	+0.2
3,229,358	-		HER17_RS14360	0.36	-0.1
3,229,358	-		HER17_RS14360	0.36	-0.4
3,229,402	-		HER17_RS14360	0.41	-1.0
3,229,402	-		HER17_RS14360	0.41	+0.3
3,229,402	-		HER17_RS14360	0.41	-0.7
3,229,427	-		HER17_RS14360	0.44	+0.4
3,229,430	-		HER17_RS14360	0.45	-0.2
3,229,536	+		HER17_RS14360	0.57	-0.1
3,229,537	-		HER17_RS14360	0.57	-0.0
3,229,623	-		HER17_RS14360	0.68	+0.6
3,229,654	+		HER17_RS14360	0.71	-0.8
3,229,665	+		HER17_RS14360	0.73	-0.5
3,229,666	-		HER17_RS14360	0.73	+0.8
3,229,666	-		HER17_RS14360	0.73	+1.0
3,229,666	-		HER17_RS14360	0.73	+0.1
3,229,681	+		HER17_RS14360	0.75	-0.4
3,229,739	-		HER17_RS14360	0.82	+0.6
3,229,798	+		HER17_RS14360	0.89	-0.1
3,229,842	+				+0.1
3,229,860	+				+0.0
3,229,861	-				+0.2
3,229,861	-				+0.3
3,229,898	-				-0.1
3,229,903	+				-0.8
3,229,904	-				+0.5
3,229,904	-				+0.3
3,229,950	+				-1.0
3,229,979	+				-1.0
3,229,979	+				+0.8
3,229,999	+				-0.4
3,230,000	-				-0.1
3,230,007	-				-1.0
3,230,041	+				-0.4
3,230,046	+				+0.0
3,230,046	+				-0.4
3,230,046	+				-0.2
3,230,047	-				+0.8
3,230,081	+				-0.4
3,230,124	+				-0.2
3,230,124	+				+0.5
3,230,124	+				+0.2
3,230,124	+				-0.4
3,230,125	-				-0.8
3,230,125	-				-1.2
3,230,125	-				+0.1
3,230,242	+		HER17_RS14365	0.11	-0.1
3,230,243	-		HER17_RS14365	0.11	-0.0
3,230,243	-		HER17_RS14365	0.11	+0.7
3,230,243	-		HER17_RS14365	0.11	-0.8
3,230,298	+		HER17_RS14365	0.16	-0.5
3,230,299	-		HER17_RS14365	0.16	-0.7
3,230,299	-		HER17_RS14365	0.16	-0.1
3,230,299	-		HER17_RS14365	0.16	+0.2
3,230,384	+		HER17_RS14365	0.24	+0.3
3,230,384	+		HER17_RS14365	0.24	+0.9
3,230,384	+		HER17_RS14365	0.24	+0.3
3,230,385	-		HER17_RS14365	0.24	+0.2
3,230,499	+		HER17_RS14365	0.35	+1.0
3,230,499	+		HER17_RS14365	0.35	+0.4
3,230,500	-		HER17_RS14365	0.35	+0.7
3,230,539	+		HER17_RS14365	0.39	-0.7
3,230,540	-		HER17_RS14365	0.39	+0.0
3,230,571	+		HER17_RS14365	0.42	+0.3
3,230,571	+		HER17_RS14365	0.42	-0.3
3,230,571	+		HER17_RS14365	0.42	+0.6
3,230,572	-		HER17_RS14365	0.42	-0.3
3,230,576	-		HER17_RS14365	0.43	-0.5
3,230,638	+		HER17_RS14365	0.49	+0.1
3,230,638	+		HER17_RS14365	0.49	-1.4
3,230,639	-		HER17_RS14365	0.49	-1.4
3,230,639	-		HER17_RS14365	0.49	-0.5
3,230,806	+		HER17_RS14365	0.65	-1.0
3,230,806	+		HER17_RS14365	0.65	-0.3
3,230,806	+		HER17_RS14365	0.65	+0.4
3,230,807	-		HER17_RS14365	0.65	-0.0
3,230,807	-		HER17_RS14365	0.65	+0.2
3,230,807	-		HER17_RS14365	0.65	+0.2
3,230,807	-		HER17_RS14365	0.65	-0.3
3,230,807	-		HER17_RS14365	0.65	+0.3
3,230,809	+		HER17_RS14365	0.65	+0.8
3,230,809	+		HER17_RS14365	0.65	+0.7
3,230,809	+		HER17_RS14365	0.65	-0.1
3,230,809	+		HER17_RS14365	0.65	-0.4
3,230,809	+		HER17_RS14365	0.65	+0.2
3,230,809	+		HER17_RS14365	0.65	+0.0
3,230,809	+		HER17_RS14365	0.65	-1.1
3,230,809	+		HER17_RS14365	0.65	+0.2
3,230,886	+		HER17_RS14365	0.72	+0.5
3,230,887	-		HER17_RS14365	0.72	-0.3