Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS13945

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,121,313	-		HER17_RS13940	0.64	-0.7
3,121,313	-		HER17_RS13940	0.64	+0.1
3,121,313	-		HER17_RS13940	0.64	+0.4
3,121,313	-		HER17_RS13940	0.64	-0.0
3,121,335	+		HER17_RS13940	0.65	-0.6
3,121,335	+		HER17_RS13940	0.65	-1.3
3,121,347	-		HER17_RS13940	0.65	-0.3
3,121,363	-		HER17_RS13940	0.66	-0.1
3,121,383	+		HER17_RS13940	0.67	+0.3
3,121,400	+		HER17_RS13940	0.68	-0.3
3,121,404	+		HER17_RS13940	0.68	+0.1
3,121,405	-		HER17_RS13940	0.68	+0.0
3,121,461	+		HER17_RS13940	0.71	+1.2
3,121,462	-		HER17_RS13940	0.71	-0.4
3,121,480	-		HER17_RS13940	0.72	-0.2
3,121,536	-		HER17_RS13940	0.75	-0.9
3,121,545	+		HER17_RS13940	0.75	-0.0
3,121,545	+		HER17_RS13940	0.75	+0.1
3,121,546	-		HER17_RS13940	0.75	+0.7
3,121,606	+		HER17_RS13940	0.78	+0.4
3,121,607	-		HER17_RS13940	0.78	-0.1
3,121,652	+		HER17_RS13940	0.81	-0.3
3,121,665	+		HER17_RS13940	0.81	+0.8
3,121,665	+		HER17_RS13940	0.81	-0.4
3,121,665	+		HER17_RS13940	0.81	+0.7
3,121,665	+		HER17_RS13940	0.81	-1.1
3,121,666	-		HER17_RS13940	0.81	-0.0
3,121,666	-		HER17_RS13940	0.81	+0.3
3,121,666	-		HER17_RS13940	0.81	-0.3
3,121,666	-		HER17_RS13940	0.81	+0.0
3,121,701	+		HER17_RS13940	0.83	+0.5
3,121,770	-		HER17_RS13940	0.86	+1.0
3,121,770	-		HER17_RS13940	0.86	-0.8
3,121,813	+		HER17_RS13940	0.89	+0.3
3,121,813	+		HER17_RS13940	0.89	+0.2
3,121,814	-		HER17_RS13940	0.89	-1.1
3,121,860	+				+0.5
3,121,860	+				+0.7
3,121,860	+				-0.3
3,121,861	-				-0.5
3,121,861	-				+0.9
3,121,861	-				-0.4
3,121,861	-				+0.2
3,121,863	-				-0.4
3,121,920	+				-0.2
3,121,920	+				+0.8
3,121,920	+				-0.3
3,121,920	+				+0.2
3,121,921	-				-0.3
3,121,964	+				-0.8
3,122,047	+				+0.4
3,122,048	-				-0.4
3,122,133	-				-0.4
3,122,138	-				-0.1
3,122,150	-				-0.0
3,122,165	+				+0.2
3,122,166	-				-0.8
3,122,183	-				+0.2
3,122,211	+				+0.0
3,122,211	+				+0.4
3,122,211	+				+0.2
3,122,212	-				+1.0
3,122,221	-				-0.6
3,122,221	-				+0.7
3,122,233	+				+0.1
3,122,244	+				-1.0
3,122,279	-				+0.6
3,122,321	+				-0.3
3,122,321	+				-0.4
3,122,322	-				+0.3
3,122,360	-				-0.0
3,122,380	+				+1.2
3,122,380	+				-0.4
3,122,380	+				-0.5
3,122,381	-				+0.3
3,122,381	-				+0.4
3,122,505	+		HER17_RS13945	0.25	-0.8
3,122,506	-		HER17_RS13945	0.25	-0.0
3,122,535	+		HER17_RS13945	0.29	-0.0
3,122,590	+		HER17_RS13945	0.36	-0.4
3,122,591	-		HER17_RS13945	0.37	-0.5
3,122,682	+		HER17_RS13945	0.49	+0.6
3,122,683	-		HER17_RS13945	0.49	-0.1
3,122,700	-		HER17_RS13945	0.51	+0.7
3,122,767	-		HER17_RS13945	0.60	+0.3
3,122,767	-		HER17_RS13945	0.60	-0.9
3,122,934	-		HER17_RS13945	0.82	-0.9
3,122,943	+		HER17_RS13945	0.83	-0.3
3,122,943	+		HER17_RS13945	0.83	-2.7
3,122,943	+		HER17_RS13945	0.83	+0.4
3,123,014	+				-0.2
3,123,014	+				+1.1
3,123,015	-				+0.6
3,123,070	-				+0.2
3,123,109	+				+0.3
3,123,109	+				+0.5
3,123,109	+				+0.2
3,123,110	-				+0.5
3,123,110	-				-0.3
3,123,165	+				-0.2
3,123,165	+				+0.4
3,123,166	-				-0.8
3,123,166	-				-0.1
3,123,173	+				-0.9
3,123,173	+				-0.3
3,123,221	+				+0.1
3,123,221	+				-0.7
3,123,222	-				-0.9
3,123,222	-				-0.3
3,123,222	-				-0.6
3,123,230	+				-0.3
3,123,232	+				-0.1
3,123,232	+				-0.8
3,123,232	+				+0.4
3,123,232	+				-0.2
3,123,232	+				+0.6
3,123,232	+				-0.2
3,123,248	-				+0.3
3,123,249	+				+0.6
3,123,254	+				-0.7
3,123,254	+				-0.1
3,123,254	+				+0.2
3,123,254	+				+0.9
3,123,254	+				-0.0
3,123,254	+				-0.4
3,123,255	-				+0.4
3,123,255	-				-2.0
3,123,255	-				+0.1
3,123,255	-				+0.4
3,123,255	-				+0.3
3,123,255	-				+1.3
3,123,255	-				+0.3
3,123,255	-				+0.1
3,123,319	+				+0.5
3,123,319	+				+0.3
3,123,319	+				+0.6
3,123,320	-				+1.0
3,123,323	+				+0.2
3,123,332	+				-0.5
3,123,525	-		HER17_RS13950	0.20	+0.6
3,123,525	-		HER17_RS13950	0.20	+0.2
3,123,548	+		HER17_RS13950	0.23	+0.2
3,123,708	+		HER17_RS13950	0.40	-0.0
3,123,708	+		HER17_RS13950	0.40	-0.8
3,123,768	-		HER17_RS13950	0.46	+0.2
3,123,823	+		HER17_RS13950	0.52	+0.5
3,123,846	-		HER17_RS13950	0.55	+0.9
3,123,846	-		HER17_RS13950	0.55	+0.1
3,123,929	+		HER17_RS13950	0.63	-0.0
3,123,929	+		HER17_RS13950	0.63	+0.6
3,123,930	-		HER17_RS13950	0.64	-0.4
3,123,948	-		HER17_RS13950	0.65	+0.5
3,123,948	-		HER17_RS13950	0.65	-0.5
3,123,948	-		HER17_RS13950	0.65	-0.3
3,124,007	+		HER17_RS13950	0.72	+0.3
3,124,007	+		HER17_RS13950	0.72	+0.3
3,124,007	+		HER17_RS13950	0.72	-1.4
3,124,007	+		HER17_RS13950	0.72	-0.2
3,124,007	+		HER17_RS13950	0.72	-0.8
3,124,007	+		HER17_RS13950	0.72	-0.4
3,124,008	-		HER17_RS13950	0.72	-0.8
3,124,008	-		HER17_RS13950	0.72	-0.2
3,124,008	-		HER17_RS13950	0.72	-0.0
3,124,008	-		HER17_RS13950	0.72	-0.2
3,124,008	-		HER17_RS13950	0.72	-0.7
3,124,008	-		HER17_RS13950	0.72	+0.0
3,124,008	-		HER17_RS13950	0.72	-0.8
3,124,011	+		HER17_RS13950	0.72	-0.2
3,124,011	+		HER17_RS13950	0.72	+1.1
3,124,011	+		HER17_RS13950	0.72	-0.1
3,124,011	+		HER17_RS13950	0.72	-0.6
3,124,011	+		HER17_RS13950	0.72	+0.8
3,124,012	-		HER17_RS13950	0.72	-0.5
3,124,012	-		HER17_RS13950	0.72	-1.1
3,124,030	+		HER17_RS13950	0.74	+0.3
3,124,031	-		HER17_RS13950	0.74	+0.2
3,124,037	+		HER17_RS13950	0.75	+1.2
3,124,037	+		HER17_RS13950	0.75	-0.2
3,124,038	-		HER17_RS13950	0.75	+0.0
3,124,038	-		HER17_RS13950	0.75	-0.7