Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS11365

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,527,945	+				-0.2
2,527,946	-				-0.9
2,527,946	-				-1.1
2,527,947	+				-1.2
2,527,948	-				+1.8
2,527,984	-				+0.3
2,527,990	+				-0.4
2,527,990	+				-0.1
2,527,990	+				+0.8
2,527,991	-				-0.5
2,527,994	+				-0.4
2,527,994	+				-1.0
2,527,995	-				-0.1
2,527,995	-				-0.4
2,528,064	-				+1.5
2,528,090	+				+0.3
2,528,090	+				-0.1
2,528,091	-				-0.6
2,528,123	-				-0.3
2,528,123	-				-2.4
2,528,140	+				-0.3
2,528,141	-				-1.1
2,528,229	+				-2.2
2,528,240	-				-0.2
2,528,283	-				-0.3
2,528,285	-				-0.3
2,528,314	-				-0.1
2,528,314	-				+0.4
2,528,319	-				+0.7
2,528,319	-				-1.5
2,528,324	+				+0.9
2,528,345	-				+0.3
2,528,345	-				+0.2
2,528,345	-				+0.5
2,528,345	-				+0.7
2,528,345	-				-0.4
2,528,386	-				-0.4
2,528,393	-				+0.7
2,528,418	+				+0.5
2,528,419	-				+0.4
2,528,440	-				+0.9
2,528,493	+				+0.2
2,528,567	-				-0.0
2,528,616	+				+0.9
2,528,616	+				+0.0
2,528,616	+				+0.2
2,528,617	-				+0.7
2,528,617	-				+0.4
2,528,617	-				+0.1
2,528,618	+				+1.5
2,528,618	+				+1.3
2,528,618	+				+0.0
2,528,619	-				-0.2
2,528,619	-				-1.5
2,528,622	+				+0.0
2,528,622	+				+1.2
2,528,622	+				-0.3
2,528,622	+				+0.5
2,528,622	+				-2.5
2,528,622	+				-1.3
2,528,622	+				-0.2
2,528,622	+				+0.5
2,528,622	+				+0.1
2,528,622	+				-0.4
2,528,622	+				+0.0
2,528,622	+				+0.5
2,528,623	-				-2.1
2,528,623	-				+0.5
2,528,623	-				+0.1
2,528,623	-				-0.1
2,528,623	-				+0.7
2,528,623	-				+0.0
2,528,623	-				-2.6
2,528,623	-				-0.0
2,528,623	-				+0.2
2,528,623	-				-0.2
2,528,623	-				-0.2
2,528,623	-				+1.3
2,528,623	-				+0.3
2,528,623	-				-0.6
2,528,623	-				+0.5
2,528,623	-				+0.2
2,528,626	+				-0.8
2,528,626	+				-2.0
2,528,626	+				+0.0
2,528,626	+				+0.1
2,528,627	-				-0.1
2,528,627	-				-0.3
2,528,627	-				-0.7
2,528,627	-				-0.4
2,528,627	-				+0.3
2,528,627	-				+0.2
2,528,627	-				+0.7
2,528,628	+				-1.5
2,528,628	+				+0.6
2,528,628	+				+0.5
2,528,629	-				+0.7
2,528,629	-				+0.9
2,528,629	-				+0.0
2,528,629	-				+0.3
2,528,673	-				+0.4
2,528,673	-				+1.1
2,528,673	-				-1.0
2,528,678	+				-0.0
2,528,678	+				-0.1
2,528,679	-				+0.1
2,528,697	+				+0.3
2,528,715	-				+0.1
2,528,805	+				+0.5
2,528,884	-				+0.5
2,528,918	+				-0.0
2,529,045	+		HER17_RS11365	0.12	-1.5
2,529,133	-		HER17_RS11365	0.22	+0.2
2,529,275	-		HER17_RS11365	0.39	-1.1
2,529,275	-		HER17_RS11365	0.39	+0.8
2,529,328	+		HER17_RS11365	0.45	-0.2
2,529,329	-		HER17_RS11365	0.45	-0.6
2,529,339	+		HER17_RS11365	0.46	+0.5
2,529,340	-		HER17_RS11365	0.46	-2.1
2,529,386	-		HER17_RS11365	0.51	-0.1
2,529,386	-		HER17_RS11365	0.51	-0.8
2,529,386	-		HER17_RS11365	0.51	-0.9
2,529,386	-		HER17_RS11365	0.51	-0.6
2,529,406	+		HER17_RS11365	0.54	+0.1
2,529,407	-		HER17_RS11365	0.54	-0.2
2,529,508	+		HER17_RS11365	0.65	-0.7
2,529,508	+		HER17_RS11365	0.65	-0.1
2,529,509	-		HER17_RS11365	0.65	+0.5
2,529,542	-		HER17_RS11365	0.69	-0.4
2,529,597	+		HER17_RS11365	0.75	+1.0
2,529,598	-		HER17_RS11365	0.76	-0.6
2,529,678	+		HER17_RS11365	0.85	-2.1
2,529,712	+		HER17_RS11365	0.89	-2.1
2,529,713	-		HER17_RS11365	0.89	-1.4
2,529,754	+				+0.1
2,529,754	+				+0.6
2,529,755	-				+0.8
2,529,792	+				-0.8
2,529,801	+				-1.8
2,529,801	+				-0.4
2,529,801	+				+0.2
2,529,813	-				+0.0
2,529,813	-				-0.5
2,529,836	-				-0.6
2,529,861	+				+0.8
2,529,862	-				+0.1
2,530,007	-		HER17_RS11370	0.22	-0.4
2,530,007	-		HER17_RS11370	0.22	-1.7
2,530,029	+		HER17_RS11370	0.25	+0.2
2,530,030	-		HER17_RS11370	0.25	-0.8
2,530,059	+		HER17_RS11370	0.28	+1.0
2,530,059	+		HER17_RS11370	0.28	+0.4
2,530,059	+		HER17_RS11370	0.28	-1.1
2,530,059	+		HER17_RS11370	0.28	-0.0
2,530,059	+		HER17_RS11370	0.28	+0.3
2,530,060	-		HER17_RS11370	0.28	-1.1
2,530,060	-		HER17_RS11370	0.28	-0.6
2,530,060	-		HER17_RS11370	0.28	-1.4
2,530,154	+		HER17_RS11370	0.39	-0.9
2,530,154	+		HER17_RS11370	0.39	+0.5
2,530,155	-		HER17_RS11370	0.39	+0.5
2,530,155	-		HER17_RS11370	0.39	-0.3
2,530,312	+		HER17_RS11370	0.57	+0.3
2,530,312	+		HER17_RS11370	0.57	+0.2
2,530,333	+		HER17_RS11370	0.59	+0.7
2,530,415	+		HER17_RS11370	0.68	+0.6
2,530,421	-		HER17_RS11370	0.69	-2.2
2,530,451	+		HER17_RS11370	0.72	-0.2
2,530,452	-		HER17_RS11370	0.72	-0.3
2,530,635	+				+0.1
2,530,635	+				-0.6
2,530,635	+				+0.9
2,530,727	+				+0.1
2,530,728	-				+0.9
2,530,729	+				-0.1
2,530,729	+				-0.1
2,530,730	-				+0.9
2,530,733	+				+0.0
2,530,733	+				+0.5
2,530,733	+				+1.2
2,530,733	+				+0.3
2,530,734	-				-0.2
2,530,734	-				+0.4
2,530,734	-				+0.0
2,530,734	-				-0.6
2,530,734	-				-0.1