Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS09670

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,134,375	-				-0.9
2,134,444	+				+0.2
2,134,444	+				-0.2
2,134,445	-				-0.4
2,134,506	-				-0.7
2,134,506	-				+0.5
2,134,533	-				-0.0
2,134,583	+		HER17_RS09665	0.13	-0.2
2,134,594	-		HER17_RS09665	0.15	-0.0
2,134,602	+		HER17_RS09665	0.16	+0.2
2,134,602	+		HER17_RS09665	0.16	-0.7
2,134,602	+		HER17_RS09665	0.16	+0.7
2,134,603	-		HER17_RS09665	0.16	-0.8
2,134,603	-		HER17_RS09665	0.16	+0.5
2,134,605	+		HER17_RS09665	0.16	-0.6
2,134,606	-		HER17_RS09665	0.16	-0.5
2,134,839	-		HER17_RS09665	0.44	-0.8
2,134,839	-		HER17_RS09665	0.44	+0.2
2,134,839	-		HER17_RS09665	0.44	+0.4
2,134,839	-		HER17_RS09665	0.44	+0.1
2,134,841	+		HER17_RS09665	0.44	+0.4
2,134,841	+		HER17_RS09665	0.44	-0.4
2,134,841	+		HER17_RS09665	0.44	-1.1
2,134,897	+		HER17_RS09665	0.51	-0.1
2,135,106	+		HER17_RS09665	0.76	-0.3
2,135,106	+		HER17_RS09665	0.76	-0.3
2,135,106	+		HER17_RS09665	0.76	-0.3
2,135,107	-		HER17_RS09665	0.76	-0.2
2,135,107	-		HER17_RS09665	0.76	+0.1
2,135,109	-		HER17_RS09665	0.76	-1.1
2,135,109	-		HER17_RS09665	0.76	-0.2
2,135,158	+		HER17_RS09665	0.82	-1.1
2,135,234	-				-1.7
2,135,234	-				-0.3
2,135,234	-				+1.4
2,135,298	+				-0.0
2,135,310	+				+0.4
2,135,337	+				+0.4
2,135,358	+				-0.8
2,135,358	+				-0.5
2,135,431	-				-0.5
2,135,470	-				+0.7
2,135,470	-				-2.5
2,135,470	-				+0.3
2,135,485	+				+0.3
2,135,514	+				-0.3
2,135,617	+		HER17_RS09670	0.15	+0.0
2,135,642	+		HER17_RS09670	0.16	+0.4
2,135,642	+		HER17_RS09670	0.16	+0.2
2,135,642	+		HER17_RS09670	0.16	-0.2
2,135,642	+		HER17_RS09670	0.16	+1.2
2,135,650	+		HER17_RS09670	0.16	+0.3
2,135,650	+		HER17_RS09670	0.16	-0.3
2,135,713	+		HER17_RS09670	0.20	-0.0
2,135,821	+		HER17_RS09670	0.26	-0.0
2,136,055	+		HER17_RS09670	0.39	+0.9
2,136,055	+		HER17_RS09670	0.39	-0.1
2,136,055	+		HER17_RS09670	0.39	+0.7
2,136,055	+		HER17_RS09670	0.39	+1.1
2,136,084	+		HER17_RS09670	0.41	-0.4
2,136,084	+		HER17_RS09670	0.41	-0.3
2,136,085	-		HER17_RS09670	0.41	-0.8
2,136,085	-		HER17_RS09670	0.41	-0.2
2,136,085	-		HER17_RS09670	0.41	+0.2
2,136,097	+		HER17_RS09670	0.42	+0.2
2,136,097	+		HER17_RS09670	0.42	-0.4
2,136,098	-		HER17_RS09670	0.42	+0.3
2,136,098	-		HER17_RS09670	0.42	+0.3
2,136,100	+		HER17_RS09670	0.42	-0.0
2,136,100	+		HER17_RS09670	0.42	-0.4
2,136,108	-		HER17_RS09670	0.42	-1.2
2,136,136	+		HER17_RS09670	0.44	-0.3
2,136,137	-		HER17_RS09670	0.44	+0.2
2,136,137	-		HER17_RS09670	0.44	-1.1
2,136,191	-		HER17_RS09670	0.47	+0.5
2,136,277	-		HER17_RS09670	0.52	-0.0
2,136,277	-		HER17_RS09670	0.52	+0.4
2,136,307	+		HER17_RS09670	0.53	+0.0
2,136,319	+		HER17_RS09670	0.54	-0.1
2,136,387	-		HER17_RS09670	0.58	-1.8
2,136,420	+		HER17_RS09670	0.60	-1.0
2,136,420	+		HER17_RS09670	0.60	+0.3
2,136,440	+		HER17_RS09670	0.61	+0.2
2,136,441	-		HER17_RS09670	0.61	+0.7
2,136,452	+		HER17_RS09670	0.62	+0.1
2,136,453	-		HER17_RS09670	0.62	+0.2
2,136,473	+		HER17_RS09670	0.63	-0.3
2,136,485	+		HER17_RS09670	0.63	-0.4
2,136,620	+		HER17_RS09670	0.71	+0.3
2,136,689	+		HER17_RS09670	0.75	-0.6
2,136,690	-		HER17_RS09670	0.75	-0.2
2,136,690	-		HER17_RS09670	0.75	+0.1
2,136,736	+		HER17_RS09670	0.78	+0.3
2,136,737	-		HER17_RS09670	0.78	+0.2
2,136,738	+		HER17_RS09670	0.78	+0.5
2,136,738	+		HER17_RS09670	0.78	-0.2
2,136,738	+		HER17_RS09670	0.78	+0.4
2,136,739	-		HER17_RS09670	0.78	+0.3
2,136,739	-		HER17_RS09670	0.78	+0.3
2,136,757	+		HER17_RS09670	0.79	-0.2
2,136,827	+		HER17_RS09670	0.83	-0.6
2,136,828	-		HER17_RS09670	0.83	-1.8
2,136,828	-		HER17_RS09670	0.83	-0.5
2,136,831	+		HER17_RS09670	0.83	+0.3
2,136,832	-		HER17_RS09670	0.83	-0.4
2,136,832	-		HER17_RS09670	0.83	+0.1
2,136,832	-		HER17_RS09670	0.83	-0.3
2,136,832	-		HER17_RS09670	0.83	-0.9
2,136,832	-		HER17_RS09670	0.83	-0.5
2,136,877	+		HER17_RS09670	0.85	+0.4
2,136,878	-		HER17_RS09670	0.85	+0.2
2,136,896	+		HER17_RS09670	0.87	-0.5
2,136,901	+		HER17_RS09670	0.87	-0.3
2,136,925	+		HER17_RS09670	0.88	-1.0
2,137,130	+				-1.1
2,137,138	-				+0.3
2,137,157	+				-0.4
2,137,204	+				-0.5
2,137,223	+				+0.1
2,137,224	-				-0.7
2,137,224	-				-0.5
2,137,229	-				+0.4
2,137,232	-				-0.7
2,137,233	+				+0.9
2,137,347	+				-0.9
2,137,348	-				-0.6
2,137,392	+				+0.9
2,137,392	+				-0.0
2,137,392	+				+0.4
2,137,392	+				+0.1
2,137,393	-				+0.7
2,137,393	-				-0.1
2,137,393	-				+0.6
2,137,393	-				-0.6
2,137,393	-				-0.2
2,137,440	-				+0.4
2,137,446	+				+0.1
2,137,447	-				+0.4
2,137,447	-				-0.8
2,137,448	+				-0.3
2,137,449	-				-0.1
2,137,483	+				+0.0
2,137,483	+				-0.0
2,137,500	+				-1.3
2,137,603	+				+0.6
2,137,662	+				-0.6
2,137,885	+		HER17_RS09675	0.32	-0.4
2,137,959	+		HER17_RS09675	0.41	+0.2
2,137,960	-		HER17_RS09675	0.41	-1.3
2,137,960	-		HER17_RS09675	0.41	+0.0
2,137,960	-		HER17_RS09675	0.41	+0.4
2,138,035	+		HER17_RS09675	0.50	-0.3
2,138,035	+		HER17_RS09675	0.50	-0.8
2,138,036	-		HER17_RS09675	0.50	+0.2