Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS09520

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,093,115	+		HER17_RS09515	0.32	+0.1
2,093,115	+		HER17_RS09515	0.32	-0.3
2,093,163	+		HER17_RS09515	0.37	-0.6
2,093,218	-		HER17_RS09515	0.42	-0.0
2,093,314	-		HER17_RS09515	0.52	-0.2
2,093,377	+		HER17_RS09515	0.58	+0.4
2,093,378	-		HER17_RS09515	0.58	+0.0
2,093,560	+		HER17_RS09515	0.77	-0.3
2,093,639	+		HER17_RS09515	0.85	+0.0
2,093,827	+				-0.0
2,093,828	-				+0.5
2,093,916	-				-2.0
2,093,919	+				-1.2
2,093,927	+				+0.5
2,093,931	+				-0.4
2,093,984	+				+0.1
2,094,011	+				+0.5
2,094,011	+				+0.4
2,094,011	+				-0.0
2,094,015	+				-0.0
2,094,129	+		HER17_RS09520	0.17	-0.4
2,094,129	+		HER17_RS09520	0.17	-2.5
2,094,129	+		HER17_RS09520	0.17	+0.2
2,094,129	+		HER17_RS09520	0.17	+0.7
2,094,261	+		HER17_RS09520	0.37	+0.1
2,094,470	+		HER17_RS09520	0.68	+0.4
2,094,654	+				+0.0
2,094,654	+				+0.3
2,094,655	-				-0.7
2,094,655	-				+0.6
2,094,666	+				+0.4
2,094,690	-				-0.0
2,094,753	+				-1.5
2,094,753	+				-0.0
2,094,754	-				+0.1
2,094,760	+				+0.0
2,094,761	-				-0.0
2,094,761	-				-1.1
2,094,830	+		HER17_RS09525	0.26	-0.5
2,094,842	+		HER17_RS09525	0.31	-0.0
2,094,847	+		HER17_RS09525	0.33	-2.0
2,094,848	-		HER17_RS09525	0.34	+0.1
2,094,858	+		HER17_RS09525	0.38	-0.6
2,094,891	-		HER17_RS09525	0.53	-1.0
2,094,891	-		HER17_RS09525	0.53	+0.0
2,094,891	-		HER17_RS09525	0.53	-0.2
2,094,891	-		HER17_RS09525	0.53	+0.3
2,094,928	-		HER17_RS09525	0.69	+0.5
2,095,004	+				-0.6
2,095,005	-				-0.1
2,095,027	-				+0.5
2,095,047	-		HER17_RS09530	0.14	+0.7
2,095,116	-		HER17_RS09530	0.33	-0.0
2,095,164	+		HER17_RS09530	0.46	-0.7
2,095,165	-		HER17_RS09530	0.46	-0.3
2,095,165	-		HER17_RS09530	0.46	+0.3
2,095,165	-		HER17_RS09530	0.46	-1.2
2,095,181	+		HER17_RS09530	0.51	+0.3
2,095,182	-		HER17_RS09530	0.51	-0.8
2,095,235	+		HER17_RS09530	0.65	-0.0
2,095,252	+		HER17_RS09530	0.70	-0.6
2,095,252	+		HER17_RS09530	0.70	+0.9
2,095,311	+		HER17_RS09530	0.86	-0.6
2,095,312	-		HER17_RS09530	0.86	-0.5
2,095,312	-		HER17_RS09530	0.86	-1.1
2,095,326	-				-0.4
2,095,360	-				-0.3
2,095,360	-				+0.2
2,095,377	-				+0.8
2,095,455	+				+0.1
2,095,529	+		HER17_RS09535	0.14	+0.4
2,095,530	-		HER17_RS09535	0.14	-0.7
2,095,657	+		HER17_RS09535	0.37	+0.0
2,095,658	-		HER17_RS09535	0.37	+0.5
2,095,658	-		HER17_RS09535	0.37	+0.1
2,095,658	-		HER17_RS09535	0.37	-0.1
2,095,658	-		HER17_RS09535	0.37	-0.3
2,095,660	+		HER17_RS09535	0.37	-0.7
2,095,671	+		HER17_RS09535	0.39	-1.5
2,095,671	+		HER17_RS09535	0.39	+0.3
2,095,672	-		HER17_RS09535	0.39	-0.7
2,095,672	-		HER17_RS09535	0.39	+0.0
2,095,672	-		HER17_RS09535	0.39	-0.3