Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS06940

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,537,939	-		HER17_RS06935	0.15	-0.8
1,537,939	-		HER17_RS06935	0.15	-0.8
1,538,057	-		HER17_RS06935	0.26	-0.4
1,538,057	-		HER17_RS06935	0.26	-0.1
1,538,099	-		HER17_RS06935	0.30	+0.5
1,538,104	+		HER17_RS06935	0.30	-0.1
1,538,104	+		HER17_RS06935	0.30	+0.1
1,538,104	+		HER17_RS06935	0.30	-0.6
1,538,104	+		HER17_RS06935	0.30	+0.7
1,538,104	+		HER17_RS06935	0.30	-1.4
1,538,104	+		HER17_RS06935	0.30	+0.4
1,538,105	-		HER17_RS06935	0.30	+1.4
1,538,105	-		HER17_RS06935	0.30	-1.0
1,538,105	-		HER17_RS06935	0.30	-0.5
1,538,203	+		HER17_RS06935	0.40	+0.1
1,538,231	+		HER17_RS06935	0.42	-1.0
1,538,231	+		HER17_RS06935	0.42	-0.5
1,538,232	-		HER17_RS06935	0.42	-0.6
1,538,232	-		HER17_RS06935	0.42	-0.2
1,538,239	+		HER17_RS06935	0.43	+0.4
1,538,240	-		HER17_RS06935	0.43	+0.3
1,538,628	+		HER17_RS06935	0.79	+0.3
1,538,667	+		HER17_RS06935	0.82	+0.4
1,538,668	-		HER17_RS06935	0.82	-0.0
1,538,668	-		HER17_RS06935	0.82	-0.7
1,539,012	+		HER17_RS06940	0.17	+0.2
1,539,111	+		HER17_RS06940	0.29	-0.7
1,539,112	-		HER17_RS06940	0.29	+0.3
1,539,284	+		HER17_RS06940	0.49	+0.5
1,539,507	+		HER17_RS06940	0.76	+0.8
1,539,507	+		HER17_RS06940	0.76	+1.7
1,539,508	-		HER17_RS06940	0.76	+0.1
1,539,508	-		HER17_RS06940	0.76	+1.1
1,539,508	-		HER17_RS06940	0.76	-0.3
1,539,508	-		HER17_RS06940	0.76	+0.3
1,539,709	+				-0.4
1,539,716	+				+1.4
1,539,716	+				-0.5
1,539,716	+				+0.2
1,539,717	-				+0.1
1,539,720	+				+0.5
1,539,720	+				+0.1
1,539,720	+				+0.7
1,539,721	-				+0.3
1,539,721	-				-0.7
1,539,721	-				+0.1
1,539,721	-				-0.5
1,539,734	-				+0.3
1,539,783	-				+0.4
1,539,813	+				+0.8
1,539,943	+		HER17_RS06945	0.25	+0.4
1,539,943	+		HER17_RS06945	0.25	+0.4
1,540,076	+		HER17_RS06945	0.41	+0.1
1,540,084	-		HER17_RS06945	0.42	-0.0
1,540,099	+		HER17_RS06945	0.44	+0.4
1,540,107	-		HER17_RS06945	0.45	+0.3
1,540,196	-		HER17_RS06945	0.56	-0.3
1,540,256	-		HER17_RS06945	0.64	-0.4
1,540,306	-		HER17_RS06945	0.70	+0.3
1,540,335	+		HER17_RS06945	0.74	-0.8
1,540,452	+		HER17_RS06945	0.88	-0.4
1,540,495	+				-0.2
1,540,496	-				+1.2
1,540,496	-				-0.8
1,540,560	-				-0.2
1,540,569	+				+0.3
1,540,570	-				+0.6
1,540,579	-				+1.6
1,540,592	-				-0.2
1,540,636	+		HER17_RS06950	0.12	-0.5
1,540,636	+		HER17_RS06950	0.12	+0.7
1,540,637	-		HER17_RS06950	0.12	-0.6
1,540,637	-		HER17_RS06950	0.12	-1.7
1,540,653	-		HER17_RS06950	0.15	+1.0