Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS06935

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,536,807	+				-0.7
1,536,808	-				+0.1
1,536,808	-				-0.1
1,536,820	-				+1.0
1,536,862	+		HER17_RS06930	0.10	+0.6
1,536,862	+		HER17_RS06930	0.10	+0.6
1,536,866	-		HER17_RS06930	0.11	+1.1
1,536,902	+		HER17_RS06930	0.15	+0.7
1,536,902	+		HER17_RS06930	0.15	-0.5
1,536,909	-		HER17_RS06930	0.15	+0.3
1,536,909	-		HER17_RS06930	0.15	+0.3
1,536,909	-		HER17_RS06930	0.15	+0.2
1,536,925	+		HER17_RS06930	0.17	-1.1
1,536,926	-		HER17_RS06930	0.17	+0.4
1,536,951	+		HER17_RS06930	0.20	+0.1
1,536,951	+		HER17_RS06930	0.20	+0.1
1,536,951	+		HER17_RS06930	0.20	-0.3
1,536,951	+		HER17_RS06930	0.20	-0.3
1,536,951	+		HER17_RS06930	0.20	-0.1
1,536,951	+		HER17_RS06930	0.20	-1.2
1,536,952	-		HER17_RS06930	0.20	-0.1
1,536,952	-		HER17_RS06930	0.20	-1.4
1,536,952	-		HER17_RS06930	0.20	+0.9
1,536,952	-		HER17_RS06930	0.20	+0.0
1,536,956	-		HER17_RS06930	0.20	-0.6
1,536,956	-		HER17_RS06930	0.20	+0.4
1,536,956	-		HER17_RS06930	0.20	+1.6
1,537,027	-		HER17_RS06930	0.28	-0.0
1,537,027	-		HER17_RS06930	0.28	+0.7
1,537,040	-		HER17_RS06930	0.29	-0.5
1,537,078	+		HER17_RS06930	0.33	-0.5
1,537,136	-		HER17_RS06930	0.40	-0.2
1,537,136	-		HER17_RS06930	0.40	+0.1
1,537,393	+		HER17_RS06930	0.67	-0.3
1,537,393	+		HER17_RS06930	0.67	-0.0
1,537,393	+		HER17_RS06930	0.67	+0.1
1,537,410	+		HER17_RS06930	0.69	+0.2
1,537,411	-		HER17_RS06930	0.69	+0.0
1,537,638	+				-0.9
1,537,658	+				-0.6
1,537,658	+				-0.3
1,537,658	+				-0.7
1,537,658	+				-0.2
1,537,659	-				+0.6
1,537,659	-				-0.7
1,537,712	+				+0.3
1,537,712	+				-0.4
1,537,726	-				+0.9
1,537,789	-				-1.7
1,537,789	-				-1.1
1,537,848	+				-0.8
1,537,848	+				-0.3
1,537,848	+				-0.3
1,537,848	+				-0.9
1,537,848	+				+0.6
1,537,848	+				-0.1
1,537,848	+				+0.0
1,537,849	-				-0.1
1,537,849	-				-0.6
1,537,849	-				-1.9
1,537,849	-				+0.7
1,537,849	-				-0.9
1,537,939	-		HER17_RS06935	0.15	-0.8
1,537,939	-		HER17_RS06935	0.15	-0.8
1,538,057	-		HER17_RS06935	0.26	-0.4
1,538,057	-		HER17_RS06935	0.26	-0.1
1,538,099	-		HER17_RS06935	0.30	+0.5
1,538,104	+		HER17_RS06935	0.30	-0.1
1,538,104	+		HER17_RS06935	0.30	+0.1
1,538,104	+		HER17_RS06935	0.30	-0.6
1,538,104	+		HER17_RS06935	0.30	+0.7
1,538,104	+		HER17_RS06935	0.30	-1.4
1,538,104	+		HER17_RS06935	0.30	+0.4
1,538,105	-		HER17_RS06935	0.30	+1.4
1,538,105	-		HER17_RS06935	0.30	-1.0
1,538,105	-		HER17_RS06935	0.30	-0.5
1,538,203	+		HER17_RS06935	0.40	+0.1
1,538,231	+		HER17_RS06935	0.42	-1.0
1,538,231	+		HER17_RS06935	0.42	-0.5
1,538,232	-		HER17_RS06935	0.42	-0.6
1,538,232	-		HER17_RS06935	0.42	-0.2
1,538,239	+		HER17_RS06935	0.43	+0.4
1,538,240	-		HER17_RS06935	0.43	+0.3
1,538,628	+		HER17_RS06935	0.79	+0.3
1,538,667	+		HER17_RS06935	0.82	+0.4
1,538,668	-		HER17_RS06935	0.82	-0.0
1,538,668	-		HER17_RS06935	0.82	-0.7
1,539,012	+		HER17_RS06940	0.17	+0.2
1,539,111	+		HER17_RS06940	0.29	-0.7
1,539,112	-		HER17_RS06940	0.29	+0.3
1,539,284	+		HER17_RS06940	0.49	+0.5
1,539,507	+		HER17_RS06940	0.76	+0.8
1,539,507	+		HER17_RS06940	0.76	+1.7
1,539,508	-		HER17_RS06940	0.76	+0.1
1,539,508	-		HER17_RS06940	0.76	+1.1
1,539,508	-		HER17_RS06940	0.76	-0.3
1,539,508	-		HER17_RS06940	0.76	+0.3
1,539,709	+				-0.4
1,539,716	+				+1.4
1,539,716	+				-0.5
1,539,716	+				+0.2
1,539,717	-				+0.1
1,539,720	+				+0.5
1,539,720	+				+0.1
1,539,720	+				+0.7
1,539,721	-				+0.3
1,539,721	-				-0.7
1,539,721	-				+0.1
1,539,721	-				-0.5
1,539,734	-				+0.3
1,539,783	-				+0.4
1,539,813	+				+0.8