Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS06930

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS06920 and HER17_RS06925 are separated by 87 nucleotidesHER17_RS06925 and HER17_RS06930 are separated by 171 nucleotidesHER17_RS06930 and HER17_RS06935 are separated by 75 nucleotides HER17_RS06920: HER17_RS06920 - phosphohistidine phosphatase SixA, at 1,535,482 to 1,535,964 _RS06920 HER17_RS06925: HER17_RS06925 - endonuclease SmrB, at 1,536,052 to 1,536,594 _RS06925 HER17_RS06930: HER17_RS06930 - 50S ribosomal protein L3 N(5)-glutamine methyltransferase, at 1,536,766 to 1,537,698 _RS06930 HER17_RS06935: HER17_RS06935 - chorismate synthase, at 1,537,774 to 1,538,859 _RS06935 Position (kb) 1536 1537 1538Strain fitness (log2 ratio) -3 -2 -1 0 1at 1535.807 kb on + strand, within HER17_RS06920at 1535.808 kb on - strand, within HER17_RS06920at 1535.821 kb on + strand, within HER17_RS06920at 1535.837 kb on + strand, within HER17_RS06920at 1535.838 kb on - strand, within HER17_RS06920at 1535.966 kb on - strandat 1535.994 kb on - strandat 1536.010 kb on - strandat 1536.074 kb on - strandat 1536.180 kb on + strand, within HER17_RS06925at 1536.187 kb on - strand, within HER17_RS06925at 1536.295 kb on + strand, within HER17_RS06925at 1536.295 kb on + strand, within HER17_RS06925at 1536.295 kb on + strand, within HER17_RS06925at 1536.350 kb on + strand, within HER17_RS06925at 1536.350 kb on + strand, within HER17_RS06925at 1536.374 kb on + strand, within HER17_RS06925at 1536.374 kb on + strand, within HER17_RS06925at 1536.374 kb on + strand, within HER17_RS06925at 1536.374 kb on + strand, within HER17_RS06925at 1536.374 kb on + strand, within HER17_RS06925at 1536.375 kb on - strand, within HER17_RS06925at 1536.425 kb on + strand, within HER17_RS06925at 1536.469 kb on + strand, within HER17_RS06925at 1536.505 kb on - strand, within HER17_RS06925at 1536.506 kb on + strand, within HER17_RS06925at 1536.506 kb on + strand, within HER17_RS06925at 1536.506 kb on + strand, within HER17_RS06925at 1536.506 kb on + strand, within HER17_RS06925at 1536.506 kb on + strand, within HER17_RS06925at 1536.506 kb on + strand, within HER17_RS06925at 1536.506 kb on + strand, within HER17_RS06925at 1536.506 kb on + strand, within HER17_RS06925at 1536.506 kb on + strand, within HER17_RS06925at 1536.507 kb on - strand, within HER17_RS06925at 1536.507 kb on - strand, within HER17_RS06925at 1536.507 kb on - strand, within HER17_RS06925at 1536.507 kb on - strand, within HER17_RS06925at 1536.507 kb on - strand, within HER17_RS06925at 1536.507 kb on - strand, within HER17_RS06925at 1536.507 kb on - strand, within HER17_RS06925at 1536.507 kb on - strand, within HER17_RS06925at 1536.510 kb on + strand, within HER17_RS06925at 1536.559 kb on + strandat 1536.581 kb on + strandat 1536.582 kb on - strandat 1536.586 kb on - strandat 1536.588 kb on + strandat 1536.589 kb on - strandat 1536.629 kb on + strandat 1536.629 kb on + strandat 1536.630 kb on - strandat 1536.630 kb on - strandat 1536.656 kb on - strandat 1536.687 kb on + strandat 1536.689 kb on + strandat 1536.689 kb on + strandat 1536.689 kb on + strandat 1536.689 kb on + strandat 1536.690 kb on - strandat 1536.723 kb on + strandat 1536.723 kb on + strandat 1536.807 kb on + strandat 1536.808 kb on - strandat 1536.808 kb on - strandat 1536.820 kb on - strandat 1536.862 kb on + strand, within HER17_RS06930at 1536.862 kb on + strand, within HER17_RS06930at 1536.866 kb on - strand, within HER17_RS06930at 1536.902 kb on + strand, within HER17_RS06930at 1536.902 kb on + strand, within HER17_RS06930at 1536.909 kb on - strand, within HER17_RS06930at 1536.909 kb on - strand, within HER17_RS06930at 1536.909 kb on - strand, within HER17_RS06930at 1536.925 kb on + strand, within HER17_RS06930at 1536.926 kb on - strand, within HER17_RS06930at 1536.951 kb on + strand, within HER17_RS06930at 1536.951 kb on + strand, within HER17_RS06930at 1536.951 kb on + strand, within HER17_RS06930at 1536.951 kb on + strand, within HER17_RS06930at 1536.951 kb on + strand, within HER17_RS06930at 1536.951 kb on + strand, within HER17_RS06930at 1536.952 kb on - strand, within HER17_RS06930at 1536.952 kb on - strand, within HER17_RS06930at 1536.952 kb on - strand, within HER17_RS06930at 1536.952 kb on - strand, within HER17_RS06930at 1536.956 kb on - strand, within HER17_RS06930at 1536.956 kb on - strand, within HER17_RS06930at 1536.956 kb on - strand, within HER17_RS06930at 1537.027 kb on - strand, within HER17_RS06930at 1537.027 kb on - strand, within HER17_RS06930at 1537.040 kb on - strand, within HER17_RS06930at 1537.078 kb on + strand, within HER17_RS06930at 1537.136 kb on - strand, within HER17_RS06930at 1537.136 kb on - strand, within HER17_RS06930at 1537.393 kb on + strand, within HER17_RS06930at 1537.393 kb on + strand, within HER17_RS06930at 1537.393 kb on + strand, within HER17_RS06930at 1537.410 kb on + strand, within HER17_RS06930at 1537.411 kb on - strand, within HER17_RS06930at 1537.638 kb on + strandat 1537.658 kb on + strandat 1537.658 kb on + strandat 1537.658 kb on + strandat 1537.658 kb on + strandat 1537.659 kb on - strandat 1537.659 kb on - strandat 1537.712 kb on + strandat 1537.712 kb on + strandat 1537.726 kb on - strandat 1537.789 kb on - strandat 1537.789 kb on - strandat 1537.848 kb on + strandat 1537.848 kb on + strandat 1537.848 kb on + strandat 1537.848 kb on + strandat 1537.848 kb on + strandat 1537.848 kb on + strandat 1537.848 kb on + strandat 1537.849 kb on - strandat 1537.849 kb on - strandat 1537.849 kb on - strandat 1537.849 kb on - strandat 1537.849 kb on - strandat 1537.939 kb on - strand, within HER17_RS06935at 1537.939 kb on - strand, within HER17_RS06935at 1538.057 kb on - strand, within HER17_RS06935at 1538.057 kb on - strand, within HER17_RS06935at 1538.099 kb on - strand, within HER17_RS06935at 1538.104 kb on + strand, within HER17_RS06935at 1538.104 kb on + strand, within HER17_RS06935at 1538.104 kb on + strand, within HER17_RS06935at 1538.104 kb on + strand, within HER17_RS06935at 1538.104 kb on + strand, within HER17_RS06935at 1538.104 kb on + strand, within HER17_RS06935at 1538.105 kb on - strand, within HER17_RS06935at 1538.105 kb on - strand, within HER17_RS06935at 1538.105 kb on - strand, within HER17_RS06935at 1538.203 kb on + strand, within HER17_RS06935at 1538.231 kb on + strand, within HER17_RS06935at 1538.231 kb on + strand, within HER17_RS06935at 1538.232 kb on - strand, within HER17_RS06935at 1538.232 kb on - strand, within HER17_RS06935at 1538.239 kb on + strand, within HER17_RS06935at 1538.240 kb on - strand, within HER17_RS06935at 1538.628 kb on + strand, within HER17_RS06935at 1538.667 kb on + strand, within HER17_RS06935at 1538.668 kb on - strand, within HER17_RS06935at 1538.668 kb on - strand, within HER17_RS06935

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,535,807 + HER17_RS06920 0.67 +0.5
1,535,808 - HER17_RS06920 0.67 +0.3
1,535,821 + HER17_RS06920 0.70 +0.6
1,535,837 + HER17_RS06920 0.73 -0.7
1,535,838 - HER17_RS06920 0.74 -1.6
1,535,966 - -0.4
1,535,994 - +0.7
1,536,010 - -0.6
1,536,074 - -0.1
1,536,180 + HER17_RS06925 0.24 +0.2
1,536,187 - HER17_RS06925 0.25 -1.1
1,536,295 + HER17_RS06925 0.45 -0.1
1,536,295 + HER17_RS06925 0.45 +1.2
1,536,295 + HER17_RS06925 0.45 -0.2
1,536,350 + HER17_RS06925 0.55 -0.4
1,536,350 + HER17_RS06925 0.55 -0.5
1,536,374 + HER17_RS06925 0.59 -0.0
1,536,374 + HER17_RS06925 0.59 -0.4
1,536,374 + HER17_RS06925 0.59 -0.8
1,536,374 + HER17_RS06925 0.59 -3.0
1,536,374 + HER17_RS06925 0.59 +0.3
1,536,375 - HER17_RS06925 0.59 +0.5
1,536,425 + HER17_RS06925 0.69 -0.3
1,536,469 + HER17_RS06925 0.77 -0.2
1,536,505 - HER17_RS06925 0.83 +0.9
1,536,506 + HER17_RS06925 0.84 +0.5
1,536,506 + HER17_RS06925 0.84 +0.1
1,536,506 + HER17_RS06925 0.84 -0.4
1,536,506 + HER17_RS06925 0.84 -0.2
1,536,506 + HER17_RS06925 0.84 +0.1
1,536,506 + HER17_RS06925 0.84 -2.2
1,536,506 + HER17_RS06925 0.84 +0.3
1,536,506 + HER17_RS06925 0.84 +0.0
1,536,506 + HER17_RS06925 0.84 +0.4
1,536,507 - HER17_RS06925 0.84 +0.3
1,536,507 - HER17_RS06925 0.84 +0.5
1,536,507 - HER17_RS06925 0.84 -0.4
1,536,507 - HER17_RS06925 0.84 -0.3
1,536,507 - HER17_RS06925 0.84 -0.1
1,536,507 - HER17_RS06925 0.84 -0.9
1,536,507 - HER17_RS06925 0.84 -0.8
1,536,507 - HER17_RS06925 0.84 -1.1
1,536,510 + HER17_RS06925 0.84 -1.3
1,536,559 + -0.1
1,536,581 + +0.9
1,536,582 - -0.6
1,536,586 - +0.6
1,536,588 + +0.2
1,536,589 - +0.3
1,536,629 + +0.4
1,536,629 + +0.7
1,536,630 - -0.2
1,536,630 - +0.3
1,536,656 - +0.6
1,536,687 + -0.1
1,536,689 + +0.6
1,536,689 + +0.4
1,536,689 + -0.2
1,536,689 + +1.0
1,536,690 - +0.0
1,536,723 + +0.3
1,536,723 + -0.7
1,536,807 + -0.7
1,536,808 - +0.1
1,536,808 - -0.1
1,536,820 - +1.0
1,536,862 + HER17_RS06930 0.10 +0.6
1,536,862 + HER17_RS06930 0.10 +0.6
1,536,866 - HER17_RS06930 0.11 +1.1
1,536,902 + HER17_RS06930 0.15 +0.7
1,536,902 + HER17_RS06930 0.15 -0.5
1,536,909 - HER17_RS06930 0.15 +0.3
1,536,909 - HER17_RS06930 0.15 +0.3
1,536,909 - HER17_RS06930 0.15 +0.2
1,536,925 + HER17_RS06930 0.17 -1.1
1,536,926 - HER17_RS06930 0.17 +0.4
1,536,951 + HER17_RS06930 0.20 +0.1
1,536,951 + HER17_RS06930 0.20 +0.1
1,536,951 + HER17_RS06930 0.20 -0.3
1,536,951 + HER17_RS06930 0.20 -0.3
1,536,951 + HER17_RS06930 0.20 -0.1
1,536,951 + HER17_RS06930 0.20 -1.2
1,536,952 - HER17_RS06930 0.20 -0.1
1,536,952 - HER17_RS06930 0.20 -1.4
1,536,952 - HER17_RS06930 0.20 +0.9
1,536,952 - HER17_RS06930 0.20 +0.0
1,536,956 - HER17_RS06930 0.20 -0.6
1,536,956 - HER17_RS06930 0.20 +0.4
1,536,956 - HER17_RS06930 0.20 +1.6
1,537,027 - HER17_RS06930 0.28 -0.0
1,537,027 - HER17_RS06930 0.28 +0.7
1,537,040 - HER17_RS06930 0.29 -0.5
1,537,078 + HER17_RS06930 0.33 -0.5
1,537,136 - HER17_RS06930 0.40 -0.2
1,537,136 - HER17_RS06930 0.40 +0.1
1,537,393 + HER17_RS06930 0.67 -0.3
1,537,393 + HER17_RS06930 0.67 -0.0
1,537,393 + HER17_RS06930 0.67 +0.1
1,537,410 + HER17_RS06930 0.69 +0.2
1,537,411 - HER17_RS06930 0.69 +0.0
1,537,638 + -0.9
1,537,658 + -0.6
1,537,658 + -0.3
1,537,658 + -0.7
1,537,658 + -0.2
1,537,659 - +0.6
1,537,659 - -0.7
1,537,712 + +0.3
1,537,712 + -0.4
1,537,726 - +0.9
1,537,789 - -1.7
1,537,789 - -1.1
1,537,848 + -0.8
1,537,848 + -0.3
1,537,848 + -0.3
1,537,848 + -0.9
1,537,848 + +0.6
1,537,848 + -0.1
1,537,848 + +0.0
1,537,849 - -0.1
1,537,849 - -0.6
1,537,849 - -1.9
1,537,849 - +0.7
1,537,849 - -0.9
1,537,939 - HER17_RS06935 0.15 -0.8
1,537,939 - HER17_RS06935 0.15 -0.8
1,538,057 - HER17_RS06935 0.26 -0.4
1,538,057 - HER17_RS06935 0.26 -0.1
1,538,099 - HER17_RS06935 0.30 +0.5
1,538,104 + HER17_RS06935 0.30 -0.1
1,538,104 + HER17_RS06935 0.30 +0.1
1,538,104 + HER17_RS06935 0.30 -0.6
1,538,104 + HER17_RS06935 0.30 +0.7
1,538,104 + HER17_RS06935 0.30 -1.4
1,538,104 + HER17_RS06935 0.30 +0.4
1,538,105 - HER17_RS06935 0.30 +1.4
1,538,105 - HER17_RS06935 0.30 -1.0
1,538,105 - HER17_RS06935 0.30 -0.5
1,538,203 + HER17_RS06935 0.40 +0.1
1,538,231 + HER17_RS06935 0.42 -1.0
1,538,231 + HER17_RS06935 0.42 -0.5
1,538,232 - HER17_RS06935 0.42 -0.6
1,538,232 - HER17_RS06935 0.42 -0.2
1,538,239 + HER17_RS06935 0.43 +0.4
1,538,240 - HER17_RS06935 0.43 +0.3
1,538,628 + HER17_RS06935 0.79 +0.3
1,538,667 + HER17_RS06935 0.82 +0.4
1,538,668 - HER17_RS06935 0.82 -0.0
1,538,668 - HER17_RS06935 0.82 -0.7

Or see this region's nucleotide sequence