Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS05740

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,262,276	+				-0.8
1,262,276	+				+0.4
1,262,277	-				+0.5
1,262,277	-				-0.0
1,262,277	-				+0.4
1,262,277	-				-0.3
1,262,277	-				+0.2
1,262,277	-				+0.6
1,262,308	+				+0.0
1,262,308	+				+0.6
1,262,311	+				-1.1
1,262,311	+				+0.3
1,262,312	-				+0.1
1,262,312	-				-0.2
1,262,323	+				+0.4
1,262,324	-				+0.1
1,262,324	-				+0.0
1,262,344	+				+0.2
1,262,402	+				+0.5
1,262,403	-				+0.1
1,262,403	-				+0.7
1,262,403	-				+0.2
1,262,407	+				+0.7
1,262,407	+				+0.3
1,262,408	-				+0.2
1,262,408	-				+1.0
1,262,584	+		HER17_RS05740	0.29	+0.4
1,262,655	+		HER17_RS05740	0.37	-0.9
1,262,656	-		HER17_RS05740	0.37	+1.0
1,262,656	-		HER17_RS05740	0.37	-0.1
1,262,680	+		HER17_RS05740	0.40	+0.2
1,262,681	-		HER17_RS05740	0.40	+0.2
1,262,689	+		HER17_RS05740	0.41	-0.0
1,262,689	+		HER17_RS05740	0.41	+0.1
1,262,689	+		HER17_RS05740	0.41	+1.5
1,262,690	-		HER17_RS05740	0.41	+0.6
1,262,690	-		HER17_RS05740	0.41	-0.2
1,262,690	-		HER17_RS05740	0.41	+0.0
1,262,690	-		HER17_RS05740	0.41	+0.2
1,262,690	-		HER17_RS05740	0.41	+0.0
1,262,690	-		HER17_RS05740	0.41	+0.3
1,262,690	-		HER17_RS05740	0.41	-1.0
1,262,690	-		HER17_RS05740	0.41	-0.9
1,262,690	-		HER17_RS05740	0.41	-0.3
1,262,691	+		HER17_RS05740	0.41	-0.4
1,262,691	+		HER17_RS05740	0.41	+0.8
1,262,691	+		HER17_RS05740	0.41	+0.9
1,262,692	-		HER17_RS05740	0.42	+1.2
1,262,692	-		HER17_RS05740	0.42	-0.1
1,262,743	+		HER17_RS05740	0.47	-0.6
1,262,743	+		HER17_RS05740	0.47	+0.1
1,262,743	+		HER17_RS05740	0.47	-0.3
1,262,744	-		HER17_RS05740	0.48	+0.2
1,262,744	-		HER17_RS05740	0.48	-0.5
1,262,748	-		HER17_RS05740	0.48	-0.4
1,262,754	+		HER17_RS05740	0.49	-0.0
1,262,754	+		HER17_RS05740	0.49	+0.2
1,262,754	+		HER17_RS05740	0.49	+0.3
1,262,755	-		HER17_RS05740	0.49	+1.3
1,262,799	+		HER17_RS05740	0.54	-0.5
1,262,862	+		HER17_RS05740	0.61	-0.2
1,262,863	-		HER17_RS05740	0.61	+0.3
1,262,863	-		HER17_RS05740	0.61	+1.4
1,262,889	+		HER17_RS05740	0.64	+0.7
1,262,890	-		HER17_RS05740	0.64	+0.0
1,262,890	-		HER17_RS05740	0.64	+0.4
1,262,896	+		HER17_RS05740	0.65	+0.1
1,262,920	+		HER17_RS05740	0.68	-0.3
1,262,952	+		HER17_RS05740	0.71	+0.3
1,262,952	+		HER17_RS05740	0.71	-0.2
1,262,960	+		HER17_RS05740	0.72	+0.2
1,262,997	+		HER17_RS05740	0.77	+0.6
1,262,997	+		HER17_RS05740	0.77	-0.0
1,262,997	+		HER17_RS05740	0.77	+0.5
1,262,997	+		HER17_RS05740	0.77	-0.6
1,262,998	-		HER17_RS05740	0.77	+0.3
1,262,998	-		HER17_RS05740	0.77	-0.6
1,262,998	-		HER17_RS05740	0.77	+0.0
1,262,998	-		HER17_RS05740	0.77	+0.7
1,262,998	-		HER17_RS05740	0.77	-0.0
1,263,127	+				+0.1
1,263,177	-				+0.2
1,263,177	-				+0.4
1,263,200	-				-0.0
1,263,200	-				+0.5
1,263,214	+				+0.1
1,263,215	-				-0.5
1,263,215	-				-0.4
1,263,215	-				-1.0
1,263,217	+				-0.2
1,263,218	-				-0.3
1,263,218	-				+0.1
1,263,218	-				-0.1
1,263,226	+				-0.1
1,263,226	+				+0.4
1,263,226	+				+0.6
1,263,226	+				+0.6
1,263,226	+				-0.8
1,263,226	+				+0.4
1,263,226	+				-0.3
1,263,226	+				+1.3
1,263,226	+				+0.4
1,263,227	-				+0.6
1,263,227	-				-0.2
1,263,227	-				-0.2
1,263,227	-				+0.6
1,263,228	+				-0.5
1,263,228	+				-0.7
1,263,228	+				+0.0
1,263,228	+				-0.5
1,263,228	+				+0.0
1,263,228	+				+1.0
1,263,229	-				-0.1
1,263,229	-				+0.3
1,263,229	-				-0.5
1,263,230	+				+1.0
1,263,230	+				-1.5
1,263,230	+				+0.4
1,263,231	-				-0.4
1,263,231	-				+0.7
1,263,261	+				+0.2
1,263,264	+				+0.2
1,263,264	+				+0.5
1,263,291	+				+0.6
1,263,292	-				+1.4
1,263,292	-				-0.1
1,263,301	-				+0.1
1,263,301	-				-0.6
1,263,301	-				-0.2
1,263,301	-				+0.6
1,263,301	-				-0.2
1,263,411	+				-1.6
1,263,411	+				-1.6
1,263,412	-				-1.0
1,263,434	+				+0.4
1,263,472	+				+1.2
1,263,472	+				-0.0
1,263,472	+				+1.0
1,263,472	+				+0.5
1,263,472	+				-0.1
1,263,530	+		HER17_RS05745	0.86	-1.0
1,263,676	-				-0.3
1,263,682	+				-0.3
1,263,682	+				+0.2
1,263,682	+				-0.3
1,263,683	-				-0.4
1,263,686	+				+0.8
1,263,701	+				-0.4
1,263,702	-				+0.7
1,263,702	-				-0.8
1,263,739	-				+0.7
1,263,739	-				+0.3
1,263,760	+				-0.9
1,263,774	+				+1.7
1,263,789	-				+0.1
1,263,873	+				+0.2
1,263,927	-		HER17_RS05755	0.13	+0.8
1,263,983	+		HER17_RS05755	0.21	+0.2
1,263,984	-		HER17_RS05755	0.21	+0.2
1,263,984	-		HER17_RS05755	0.21	+0.3
1,264,115	+		HER17_RS05755	0.40	+0.3
1,264,115	+		HER17_RS05755	0.40	+0.7
1,264,115	+		HER17_RS05755	0.40	+0.5
1,264,116	-		HER17_RS05755	0.40	-0.9
1,264,116	-		HER17_RS05755	0.40	-1.0
1,264,168	-		HER17_RS05755	0.48	-0.5
1,264,168	-		HER17_RS05755	0.48	-0.2